Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

2180550 .. 2183354

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGTCCATCTCTCACGAGCTATATCCCTCACAAGACGACCTTCTCTACGAAGAAGATGTTCTCCGAAACCCATACAGCCTCAAGCTATGGTGGCGATACCTAATTGCCCGATCCGACGCGCCGTTCAAGACGCGCCAAATCATCTACGAGCGCGCCGTCAAGGCCCTCTCCGGAAGCTACAAGCTTTGGCACGCTTACCTTCTCGAACGCCTCGAACTCGCTCGCAACAATCACTCCGATTACGAAACCCTAAACAACACTTTCGAAAGATCCCTAGTCACAATGCACAAGATGCCGCGGATTTGGCTTATGTACCTGCAGAGCCTGACGGAGCAGAAATTGGTCACCAGGACTCGCCGGACTTTTGACAGAGCGCTGTGTGCTCTTCCCGTGGAACAACACGACCGCGTCTGGGAGCTCTACCTTGCTTTCGTTCGTCAGAAGGGTATTCCGATCGAGACCTCGCTTAGGGTTTACCGGAGGTACTTACAATTTGACCCTACTTATGTGGAAGACTATATTAATTTCTTGATCGAGTCTCGTCTTTGGCAAGAGGCGGCGGAGAGGCTCGCCTCGGTGTTGAATGATGATGAGTTTTGTTCAGTAAAGGGGAAGACTAAGCAGACGTTGTGGTTGGAATATTGTGATTTGCTTGCTAAGCACGCTACAGATGTCTTGGGCTTCGATGTGGATGCTATCATTAGATGTGGGATTAAGAAGGTTAAAGACGAGGTGGGGAGGCTGTGGACGTCGCTGGCTGAGTATTACATCAAGAGGAGATTGTTTGAGAAGGCTAGGGATGTGTTTGAGGAGGCTATGCAAAGTGTGGTGACTGTGAGAGATTTTGGTGTTGTTTTTGATTCGTATGCTCAATTTTTGGAGAGTTTCATTGCTATTAAGATGGAGACGATGGATGATGATGATGATGAGGAGGAGGAGGAGGAAGAAGAAGATGTTCGAATCAATGTAAACTTATCTGAGGTTGAGTTTAAGAAGACATTGATGAAGGATTTTTGGCTGTGCAGTGATAATGATATTGATTTGAGGTTGGCACAGTTGGAGGATTTGATGAATAGAAGACCTGAGCTGGTTAATTCTGTTGCTTTGAGACAGAATCCACATAATGTAGAGCAGTGGCATCGGAGAGTGAAACTCTTCGAGGGAAATCCCGCGAAGCAGGTACTTACTTATGTGGAGGCGCTGAAGACAGTTGAGCCAATGCTAGCAGTGGGGAAGCCTCACACATTGTGGGTTGCTTTTGCTAAGTTGTATGAAACTCAAGGAGACATTGCAAATGCAAAAGTGGTTTTCGAGAGAGCAGTGCAAGCGAACTACAAGGATGTCGATGATTTGGCATGTGTGTGGTGTGAGTCGGCAGAGATGGAACTAAGGAATAAGAATTCTCGAAGATCCCGAGAACTAATGGGTGTGGCTACAGCAGAGCCATCGGCTGAGGTGAAACGTAGAGCGAAGGCTGCAGGTGGGAATGAACCAGTTCAGATGAAACTCTACAAGTCCTCGAGACTGTGGACTTTATATGTGGACTTGGAGGAGAGCTTTGGTACATTAGGATCCACTCGGGAAGTGTATGAGAGAATGTTGGATCTTAGAATAGCGACACCACAAATCATAATCAACTATGCATCCCTTCTGGAAGAGCACAAGTATTTTGAAGAAGCGTTCAAAGTGTATGAAAAGGGCACTCAAATGTTCAAGTACCCGCATGTCAAAGACATATGGGTTACATATCTTTCAAAGTTTGTGAAGAGATATGGGAGGACACAAATGGAACGCGCAAGAGAGCTATTCGAGAATGCTATTAAAGCGGCGCCGGCGGACTCAAAGAAACCTTTGTATCTTCAGTTTGCAAAGATGGAGGAGGATTATGGTCTAGCTAAGAGGGTTATGGAGGTTTATCATGCAGCAGTTGAGGCTGTTCCGGAACATGACAAGTTGAGCATGTACGAAATATATATCGCCCGCGCAGCTGAGAGATTTGGAGTCTCCAAGACAAGGGAGATATATGTGCAAGCAATAGAATCTGGTCTCCCACACAAGGATGTTAAGACAATGTGTTTGAAGTATGCCGAGCTTGAGAAGAGCTTGGGTGAAATTGATCGTGCTCGGAGAGTATATATGTATGGATCACAGCTTTCACATCCGAATTATGATGTGGATTTATGGAACAAATGGCTCGAGTTTGAGGTGCAACACGGAAATGAGGATACTTTCAGAGATATGCTTCGAATCAAACGGACTGTGTCTGCAAGCTATAGCCAGACGGACTATACTGTGATGCAAAAGGATCAGAGGTTAAGCATTGGCGGGGAGATAAAAGTTAGTGCTGGTTATCATGAAGATATTGAACTACCCGAAGAAGAAACTGATTATGAAAACGAGAAGATGGTCGAGATTGCACAAAAAGATGTCCCATTTTCTGTTTTTGGACATATGGCTAACAAAAGAAAGAAGCCTGAAGATGATTCTCCCCAAAGCCCCTTTGGGGCTCTTGAGAGGATACAGAGGCGAAGACTAGCAGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

849

Amino Acids

99.65

Weight (kDa)

5.68

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	12 - 167	2.9e-58	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	20 - 141	3.9e-08	PRP39 N-terminal HAT repeat
HAT_Syf1_M	PF23220	170 - 329	1.4e-54	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_M	PF23220	342 - 404	6e-22	Pre-mRNA-splicing factor SYF1 middle HAT repeat
Suf	PF05843	354 - 653	9.6e-11	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	369 - 537	8.1e-06	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	406 - 771	1.1e-167	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N	PF23240	546 - 645	5.7e-09	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1469
AatII	GACGTC	1 cut(s)	752
Acc36I	ACCTGC	3 cut(s)	324, 1168, 1469
AccB1I	GGYRCC	1 cut(s)	1828
AccII	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
AccIII	TCCGGA	2 cut(s)	170, 1939
AclWI	GGATC	8 cut(s)	105, 264, 1404, 1566, 1579, 1611, 2152, 2313
AcsI	RAATTY	1 cut(s)	1399
AcuI	CTGAAG	3 cut(s)	1223, 1844, 2496
AcyI	GRCGYC	2 cut(s)	749, 1829
AdeI	CACNNNGTG	1 cut(s)	1248
AfaI	GTAC	6 cut(s)	314, 485, 1182, 1564, 1718, 1964
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	5 cut(s)	412, 468, 2013, 2056, 2503
AgsI	TTSAA	8 cut(s)	127, 583, 1673, 1684, 1714, 1755, 2080, 2366
AjnI	CCWGG	1 cut(s)	347
Alw21I	GWGCWC	4 cut(s)	385, 420, 1662, 2125
Alw26I	GTCTC	8 cut(s)	452, 543, 899, 1102, 1278, 1516, 2008, 2051
AlwI	GGATC	8 cut(s)	105, 264, 1404, 1566, 1579, 1611, 2152, 2313
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
Aor13HI	TCCGGA	2 cut(s)	170, 1939
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	1475, 1922, 1985
ApoI	RAATTY	1 cut(s)	1399
ArsI	GACNNNNNNTTYG	2 cut(s)	2059, 2091
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	4 cut(s)	57, 954, 1154, 1494
AspLEI	GCGC	9 cut(s)	121, 135, 153, 155, 376, 1201, 1796, 1831, 1985
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	337, 841, 1468, 2120
AsuII	TTCGAA	3 cut(s)	264, 958, 2245
AsuNHI	GCTAGC	1 cut(s)	1222
AvaI	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
BaeGI	GKGCMC	1 cut(s)	1703
BaeI	ACNNNNGTAYC	2 cut(s)	1838, 1871
BamHI	GGATCC	1 cut(s)	1571
BanI	GGYRCC	1 cut(s)	1828
BanII	GRGCYC	2 cut(s)	420, 2509
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	6 cut(s)	519, 620, 1001, 1084, 1211, 2536
Bbv12I	GWGCWC	4 cut(s)	385, 420, 1662, 2125
BbvCI	CCTCAGC	1 cut(s)	1452
BbvI	GCAGC	3 cut(s)	1462, 1934, 1997
BccI	CCATC	7 cut(s)	14, 895, 904, 1375, 1453, 1867, 2398
BceAI	ACGGC	2 cut(s)	106, 140
BcgI	CGANNNNNNTGC	6 cut(s)	674, 708, 1121, 1155, 1428, 1462
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	2 cut(s)	2218, 2511
BcoDI	GTCTC	8 cut(s)	452, 543, 899, 1102, 1278, 1516, 2008, 2051
BfaI	CTAG	5 cut(s)	275, 795, 1223, 1892, 2534
BfmI	CTRYAG	5 cut(s)	317, 666, 1434, 1476, 2272
BfoI	RGCGCY	3 cut(s)	377, 1202, 1832
BfuAI	ACCTGC	3 cut(s)	324, 1168, 1469
BfuI	GTATCC	2 cut(s)	2218, 2511
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	296, 558, 1476, 1827, 1923, 1986
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	6 cut(s)	297, 559, 1477, 1828, 1924, 1987
Bme1390I	CCNGG	1 cut(s)	349
BmeT110I	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	1573, 1830
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	5 cut(s)	282, 682, 1147, 1652, 2286
BmtI	GCTAGC	1 cut(s)	1226
BpiI	GAAGAC	6 cut(s)	519, 620, 1001, 1084, 1211, 2536
BplI	GAGNNNNNCTC	2 cut(s)	1137, 1169
Bpu10I	CCTNAGC	3 cut(s)	467, 1083, 1452
Bpu1102I	GCTNAGC	1 cut(s)	657
Bpu14I	TTCGAA	3 cut(s)	264, 958, 2245
BpuEI	CTTGAG	4 cut(s)	65, 1263, 2114, 2531
BsaHI	GRCGYC	2 cut(s)	749, 1829
BsaI	GGTCTC	2 cut(s)	452, 2051
BsaJI	CCNNGG	3 cut(s)	296, 390, 573
BsaWI	WCCGGW	3 cut(s)	170, 477, 1939
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	5 cut(s)	412, 468, 2013, 2056, 2503
Bse118I	RCCGGY	1 cut(s)	1831
Bse1I	ACTGG	1 cut(s)	1493
Bse3DI	GCAATG	2 cut(s)	888, 1287
BseAI	TCCGGA	2 cut(s)	170, 1939
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	3 cut(s)	296, 390, 573
BseGI	GGATG	7 cut(s)	697, 805, 919, 1345, 1643, 2065, 2158
BseLI	CCNNNNNNNGG	5 cut(s)	412, 468, 2013, 2056, 2503
BseMI	GCAATG	2 cut(s)	888, 1287
BseMII	CTCAG	5 cut(s)	750, 969, 1074, 1443, 1980
BseNI	ACTGG	1 cut(s)	1493
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	8 cut(s)	790, 824, 944, 947, 950, 953, 1565, 1892
BseSI	GKGCMC	1 cut(s)	1703
BseXI	GCAGC	3 cut(s)	1462, 1934, 1997
BsgI	GTGCAG	1 cut(s)	1042
Bsh1236I	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
Bsh1285I	CGRYCG	2 cut(s)	406, 456
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	1828
BsiEI	CGRYCG	2 cut(s)	406, 456
BsiHKAI	GWGCWC	4 cut(s)	385, 420, 1662, 2125
BsiHKCI	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
BsiSI	CCGG	5 cut(s)	171, 358, 478, 1832, 1940
BslFI	GGGAC	1 cut(s)	2414
BslI	CCNNNNNNNGG	5 cut(s)	412, 468, 2013, 2056, 2503
BsmAI	GTCTC	8 cut(s)	452, 543, 899, 1102, 1278, 1516, 2008, 2051
BsmBI	CGTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	2414
BsmI	GAATGC	1 cut(s)	1819
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	2 cut(s)	452, 2051
BsoBI	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
Bsp119I	TTCGAA	3 cut(s)	264, 958, 2245
Bsp1286I	GDGCHC	6 cut(s)	385, 420, 1662, 1703, 2125, 2509
Bsp13I	TCCGGA	2 cut(s)	170, 1939
Bsp1720I	GCTNAGC	1 cut(s)	657
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	5 cut(s)	751, 970, 1075, 1444, 1981
BspEI	TCCGGA	2 cut(s)	170, 1939
BspFNI	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
BspHI	TCATGA	1 cut(s)	2353
BspLI	GGNNCC	2 cut(s)	1573, 1830
BspMAI	CTGCAG	2 cut(s)	321, 1480
BspMI	ACCTGC	3 cut(s)	324, 1168, 1469
BspOI	GCTAGC	1 cut(s)	1226
BspPI	GGATC	8 cut(s)	105, 264, 1404, 1566, 1579, 1611, 2152, 2313
BspQI	GCTCTTC	3 cut(s)	390, 1650, 2093
BspT104I	TTCGAA	3 cut(s)	264, 958, 2245
BspT107I	GGYRCC	1 cut(s)	1828
BspTNI	GGTCTC	2 cut(s)	452, 2051
BsrDI	GCAATG	2 cut(s)	888, 1287
BsrFI	RCCGGY	1 cut(s)	1831
BsrI	ACTGG	1 cut(s)	1493
BssAI	RCCGGY	1 cut(s)	1831
BssECI	CCNNGG	3 cut(s)	296, 390, 573
BssHII	GCGCGC	1 cut(s)	151
BssNI	GRCGYC	2 cut(s)	749, 1829
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	6 cut(s)	835, 1056, 1210, 1527, 2260, 2293
Bst6I	CTCTTC	5 cut(s)	390, 1160, 1650, 1760, 2093
BstACI	GRCGYC	2 cut(s)	749, 1829
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBI	TTCGAA	3 cut(s)	264, 958, 2245
BstDSI	CCRYGG	2 cut(s)	296, 390
BstEII	GGTNACC	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	7 cut(s)	697, 805, 919, 1345, 1643, 2065, 2158
BstFNI	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
BstH2I	RGCGCY	3 cut(s)	377, 1202, 1832
BstHHI	GCGC	9 cut(s)	121, 135, 153, 155, 376, 1201, 1796, 1831, 1985
BstMAI	GTCTC	8 cut(s)	452, 543, 899, 1102, 1278, 1516, 2008, 2051
BstMCI	CGRYCG	2 cut(s)	406, 456
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	3 cut(s)	1359, 1727, 1963
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	5 cut(s)	317, 666, 1434, 1476, 2272
BstSLI	GKGCMC	1 cut(s)	1703
BstUI	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
BstV1I	GCAGC	3 cut(s)	1462, 1934, 1997
BstV2I	GAAGAC	6 cut(s)	519, 620, 1001, 1084, 1211, 2536
BstX2I	RGATCY	4 cut(s)	269, 1409, 1571, 1603
BstYI	RGATCY	4 cut(s)	269, 1409, 1571, 1603
BsuI	GTATCC	2 cut(s)	2218, 2511
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	296, 390
BtsCI	GGATG	7 cut(s)	697, 805, 919, 1345, 1643, 2065, 2158
BtsI	GCAGTG	5 cut(s)	1030, 1139, 1233, 1326, 2544
BtsIMutI	CAGTG	5 cut(s)	1030, 1139, 1233, 1326, 2544
BveI	ACCTGC	3 cut(s)	324, 1168, 1469
CaiI	CAGNNNCTG	1 cut(s)	325
CciI	TCATGA	1 cut(s)	2353
CfoI	GCGC	9 cut(s)	121, 135, 153, 155, 376, 1201, 1796, 1831, 1985
Cfr10I	RCCGGY	1 cut(s)	1831
Cfr13I	GGNCC	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	299
CseI	GACGC	3 cut(s)	125, 139, 397
Csp6I	GTAC	6 cut(s)	313, 484, 1181, 1563, 1717, 1963
CviAII	CATG	6 cut(s)	1356, 1724, 1919, 1946, 1960, 2354
CviQI	GTAC	6 cut(s)	313, 484, 1181, 1563, 1717, 1963
DinI	GGCGCC	1 cut(s)	1830
DraIII	CACNNNGTG	1 cut(s)	1248
Eam1104I	CTCTTC	5 cut(s)	390, 1160, 1650, 1760, 2093
EarI	CTCTTC	5 cut(s)	390, 1160, 1650, 1760, 2093
EciI	GGCGGA	2 cut(s)	575, 1850
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	420, 2509
Eco31I	GGTCTC	2 cut(s)	452, 2051
Eco47III	AGCGCT	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	3 cut(s)	1223, 1844, 2496
Eco88I	CYCGRG	4 cut(s)	1413, 1519, 1578, 2195
Eco91I	GGTNACC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	1399
EcoRII	CCWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	1645
EcoT38I	GRGCYC	2 cut(s)	420, 2509
EgeI	GGCGCC	1 cut(s)	1830
EheI	GGCGCC	1 cut(s)	1830
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	6 cut(s)	1359, 1727, 1922, 1949, 1963, 2357
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	2414
FatI	CATG	6 cut(s)	1355, 1723, 1918, 1945, 1959, 2353
FauI	CCCGC	4 cut(s)	1177, 1728, 1988, 2318
FauNDI	CATATG	2 cut(s)	1736, 2451
Fnu4HI	GCNGC	6 cut(s)	296, 558, 1476, 1827, 1923, 1986
FokI	GGATG	7 cut(s)	704, 812, 926, 1352, 1630, 2072, 2145
FriOI	GRGCYC	2 cut(s)	420, 2509
Fsp4HI	GCNGC	6 cut(s)	296, 558, 1476, 1827, 1923, 1986
FspBI	CTAG	5 cut(s)	275, 795, 1223, 1892, 2534
GlaI	GCGC	9 cut(s)	120, 134, 152, 154, 375, 1200, 1795, 1830, 1984
GluI	GCNGC	6 cut(s)	296, 558, 1476, 1827, 1923, 1986
HaeII	RGCGCY	3 cut(s)	377, 1202, 1832
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	5 cut(s)	171, 358, 478, 1832, 1940
HgaI	GACGC	3 cut(s)	125, 139, 397
HhaI	GCGC	9 cut(s)	121, 135, 153, 155, 376, 1201, 1796, 1831, 1985
Hin1I	GRCGYC	2 cut(s)	749, 1829
Hin1II	CATG	6 cut(s)	1359, 1727, 1922, 1949, 1963, 2357
Hin6I	GCGC	9 cut(s)	119, 133, 151, 153, 374, 1199, 1794, 1829, 1983
HinP1I	GCGC	9 cut(s)	119, 133, 151, 153, 374, 1199, 1794, 1829, 1983
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	5 cut(s)	171, 358, 478, 1832, 1940
HphI	GGTGA	4 cut(s)	337, 841, 1468, 2120
Hpy166II	GTNNAC	5 cut(s)	475, 747, 970, 1530, 1543
Hpy8I	GTNNAC	5 cut(s)	475, 747, 970, 1530, 1543
Hpy99I	CGWCG	2 cut(s)	119, 754
HpyAV	CCTTC	8 cut(s)	50, 209, 436, 712, 784, 1000, 1465, 1658
HpyCH4III	ACNGT	6 cut(s)	835, 1056, 1210, 1527, 2260, 2293
HpyCH4IV	ACGT	3 cut(s)	626, 749, 1462
HpySE526I	ACGT	3 cut(s)	626, 749, 1462
Hsp92I	GRCGYC	2 cut(s)	749, 1829
Hsp92II	CATG	6 cut(s)	1359, 1727, 1922, 1949, 1963, 2357
HspAI	GCGC	9 cut(s)	119, 133, 151, 153, 374, 1199, 1794, 1829, 1983
KasI	GGCGCC	1 cut(s)	1828
Kpn2I	TCCGGA	2 cut(s)	170, 1939
KroI	GCCGGC	1 cut(s)	1831
KroNI	GCCGGC	1 cut(s)	1833
KspI	CCGCGG	1 cut(s)	299
LguI	GCTCTTC	3 cut(s)	390, 1650, 2093
LmnI	GCTCC	2 cut(s)	331, 415
Lsp1109I	GCAGC	3 cut(s)	1462, 1934, 1997
LweI	GCATC	5 cut(s)	282, 682, 1147, 1652, 2286
MaeI	CTAG	5 cut(s)	275, 795, 1223, 1892, 2534
MaeII	ACGT	3 cut(s)	626, 749, 1462
MaeIII	GTNAC	4 cut(s)	277, 343, 829, 1741
MflI	RGATCY	4 cut(s)	269, 1409, 1571, 1603
MhlI	GDGCHC	6 cut(s)	385, 420, 1662, 1703, 2125, 2509
MluCI	AATT	9 cut(s)	102, 338, 491, 523, 872, 1093, 1399, 2112, 2164
Mly113I	GGCGCC	1 cut(s)	1829
MlyI	GAGTC	5 cut(s)	346, 545, 1379, 1832, 2010
MmeI	TCCRAC	4 cut(s)	138, 615, 1038, 1581
Mph1103I	ATGCAT	1 cut(s)	1645
MreI	CGCCGGCG	1 cut(s)	1831
MroI	TCCGGA	2 cut(s)	170, 1939
MroNI	GCCGGC	1 cut(s)	1831
MroXI	GAANNNNTTC	4 cut(s)	57, 954, 1154, 1494
MseI	TTAA	9 cut(s)	522, 714, 723, 897, 990, 1092, 1821, 2064, 2315
MslI	CAYNNNNRTG	4 cut(s)	1360, 1706, 2058, 2217
MspA1I	CMGCKG	2 cut(s)	298, 1988
MspI	CCGG	5 cut(s)	171, 358, 478, 1832, 1940
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	1819
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	8 cut(s)	119, 133, 153, 298, 408, 1172, 1794, 1983
NaeI	GCCGGC	1 cut(s)	1833
NarI	GGCGCC	1 cut(s)	1829
NdeI	CATATG	2 cut(s)	1736, 2451
NgoMIV	GCCGGC	1 cut(s)	1831
NheI	GCTAGC	1 cut(s)	1222
NlaIII	CATG	6 cut(s)	1359, 1727, 1922, 1949, 1963, 2357
NlaIV	GGNNCC	2 cut(s)	1573, 1830
NmeAIII	GCCGAG	1 cut(s)	2113
NmuCI	GTSAC	3 cut(s)	277, 343, 829
NsiI	ATGCAT	1 cut(s)	1645
NspI	RCATGY	3 cut(s)	1359, 1727, 1963
NspV	TTCGAA	3 cut(s)	264, 958, 2245
PaeR7I	CTCGAG	2 cut(s)	1519, 2195
PagI	TCATGA	1 cut(s)	2353
PaqCI	CACCTGC	1 cut(s)	1469
PauI	GCGCGC	1 cut(s)	151
PciSI	GCTCTTC	3 cut(s)	390, 1650, 2093
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 210, 1411
PctI	GAATGC	1 cut(s)	1819
PdiI	GCCGGC	1 cut(s)	1833
PdmI	GAANNNNTTC	4 cut(s)	57, 954, 1154, 1494
PfeI	GAWTC	6 cut(s)	860, 960, 1114, 2039, 2247, 2483
PflFI	GACNNNGTC	2 cut(s)	407, 2260
PkrI	GCNGC	6 cut(s)	297, 559, 1477, 1828, 1924, 1987
Ple19I	CGATCG	1 cut(s)	456
PleI	GAGTC	5 cut(s)	346, 544, 1378, 1832, 2009
PluTI	GGCGCC	1 cut(s)	1832
PpsI	GAGTC	5 cut(s)	346, 544, 1378, 1832, 2009
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	1573, 1830
PspPI	GGNCC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	2195
PstI	CTGCAG	2 cut(s)	321, 1480
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	4 cut(s)	269, 1409, 1571, 1603
PsyI	GACNNNGTC	2 cut(s)	407, 2260
PteI	GCGCGC	1 cut(s)	151
PvuI	CGATCG	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	1988
RsaI	GTAC	6 cut(s)	314, 485, 1182, 1564, 1718, 1964
RsaNI	GTAC	6 cut(s)	313, 484, 1181, 1563, 1717, 1963
RseI	CAYNNNNRTG	4 cut(s)	1360, 1706, 2058, 2217
SacI	GAGCTC	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	299
SapI	GCTCTTC	3 cut(s)	390, 1650, 2093
SaqAI	TTAA	9 cut(s)	522, 714, 723, 897, 990, 1092, 1821, 2064, 2315
SatI	GCNGC	6 cut(s)	296, 558, 1476, 1827, 1923, 1986
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	5 cut(s)	346, 545, 1379, 1832, 2010
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	6 cut(s)	385, 420, 1662, 1703, 2125, 2509
SfaNI	GCATC	5 cut(s)	282, 682, 1147, 1652, 2286
SfcI	CTRYAG	5 cut(s)	317, 666, 1434, 1476, 2272
SfoI	GGCGCC	1 cut(s)	1830
Sfr274I	CTCGAG	2 cut(s)	1519, 2195
Sfr303I	CCGCGG	1 cut(s)	299
SfuI	TTCGAA	3 cut(s)	264, 958, 2245
SgrAI	CRCCGGYG	1 cut(s)	1831
SgrBI	CCGCGG	1 cut(s)	299
SlaI	CTCGAG	2 cut(s)	1519, 2195
SmiMI	CAYNNNNRTG	4 cut(s)	1360, 1706, 2058, 2217
SmlI	CTYRAG	6 cut(s)	80, 1278, 1519, 2093, 2195, 2510
SmoI	CTYRAG	6 cut(s)	80, 1278, 1519, 2093, 2195, 2510
Sse9I	AATT	9 cut(s)	102, 338, 491, 523, 872, 1093, 1399, 2112, 2164
SspDI	GGCGCC	1 cut(s)	1828
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	5 cut(s)	275, 795, 1223, 1892, 2534
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	6 cut(s)	835, 1056, 1210, 1527, 2260, 2293
TaiI	ACGT	3 cut(s)	629, 752, 1465
TasI	AATT	9 cut(s)	102, 338, 491, 523, 872, 1093, 1399, 2112, 2164
TauI	GCSGC	3 cut(s)	298, 560, 1829
TfiI	GAWTC	6 cut(s)	860, 960, 1114, 2039, 2247, 2483
Tru1I	TTAA	9 cut(s)	522, 714, 723, 897, 990, 1092, 1821, 2064, 2315
Tru9I	TTAA	9 cut(s)	522, 714, 723, 897, 990, 1092, 1821, 2064, 2315
TscAI	CASTG	5 cut(s)	1030, 1139, 1233, 1326, 2544
TseFI	GTSAC	3 cut(s)	277, 343, 829
TseI	GCWGC	3 cut(s)	1475, 1922, 1985
Tsp45I	GTSAC	3 cut(s)	277, 343, 829
TspDTI	ATGAA	9 cut(s)	877, 1019, 1085, 1287, 1503, 1517, 1707, 2370, 2406
TspGWI	ACGGA	4 cut(s)	344, 2229, 2269, 2297
TspRI	CASTG	5 cut(s)	1030, 1139, 1233, 1326, 2544
Tth111I	GACNNNGTC	2 cut(s)	407, 2260
VspI	ATTAAT	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	1399
XceI	RCATGY	3 cut(s)	1359, 1727, 1963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2498
XhoI	CTCGAG	2 cut(s)	1519, 2195
XmnI	GAANNNNTTC	4 cut(s)	57, 954, 1154, 1494
XspI	CTAG	5 cut(s)	275, 795, 1223, 1892, 2534
ZraI	GACGTC	1 cut(s)	750
Zsp2I	ATGCAT	1 cut(s)	1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.