Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

4065935 .. 4070854

Gene Structure 4920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGGCTATCTCTCAGGAACTCTACCCCTCCCAAGATGACCTTCTCTACGAAGAAGAGCTTCTCCGAAACCCTTACAGCCTCAAGCTCTGGTGGCGCTACCTAATCGCCCGATCCGACGCGCCCTTCAAGAAGCGCCGCACCATCTACGAGCGCGCCGTCAAGGCCCTCCCCGGAAGCTACAAGCTCTGGTACGCCTACCTCCGCGAGCGCCTAGAGCTCGTCCGCAACTTTCCGATCAACCACTCCGAGTACGAAACCCTAAACAACACGTTCGAGAGAGCGCTGGTCACAATGCACAAGATGCCGCGGATTTGGATTCTGTATCTGCAGAGCCTGACGGAGCAGAGATTGGTCACCAGGACTCGCCGGAGTTTTGACCGGGCGCTGTGTGCTCTTCCGGTGCAGCAGCACGACCGGATTTGGGAGCTGTATTTGGTGTTCGTAAGCCAGAAGGGGATCCCTATCCAGACCTCGCTTCGGGTCTACCGGAGGTACTTGCTTTATGACCCGACTCATGTTGAGGATTTTATTGCGTTTTTGATAGAGTCTGAGCTGTGGCAAGAGGCGGCGGAGCGGCTGGCCTCGGTGCTTAATGATGATCAGTTTAGGTCAATTAAGGGGAAGACGAAGCATAGGCTGTGGTTGGAGTTGTGTGATTTGCTTACTAAGAATGCCACGGCGGTTTCGGGGTTGAATGTGGATGCTATCATTAGAGGTGGGATTAAGAAGTTTACGGATGAGGTGGGGAGGCTGTGGACGTCGTTGGCGGATTATTATATTAAGAGGAGTTTGTTTGAGAAGGCTCGGGATGTGTTTGAGGAGGGTATGCAGACTGTGGTGACTGTGAGGGATTTCAGTGTGATTTTCGATGCGTATGCGCAGTTTGAAGAGAGTATGCTTGCAATTAAGATGGAGGCTTTGGGGAGTGATGAGGACGAGGAGGAGGAAGGAGAGAATGGGAGAATGGAAGATGAGAGAAGTGAAGAGGAGGAGGAAGATGTCCGGACCAATGTAGACTTGTCTGTGGCTGAGCTTGAGAGGAAAATACTCCATGGGTTTTGGCTACATGATGAGAATGATGTTGATTTGAGGTTGGCTAGATTGGACCATCTTATGGATAGAAGACCCGAACTGGCTAATAGTGTTCTTTTGAGACAAAATCCGCATAATGTAGAGCAATGGCACCGGAGAGTGAAGCTGTTTGAGGGGAATCCTACAAAGCAGATACTTACTTACACCCAGGCTGTGAAGACAGTGGATCCAATGCAAGCAGTGGGGAAGCCTCATACGTTGTGGGTTGCTTTTGCTAAGCTGTATGAAACACATGGAGATATTGCAAATGCAAGAGTAATTTTTGATAAGGCCGTCCAGGTGAACTACAAGACAGTGGATAATCTGGCTAGTCTATGGTGTGAGTGGGCAGAAATGGAATTGCGGCATAAGAATTTTAAACGAGCCCTGGAACTGATGAGTAGAGCTACAGCAGAGCCGTCTGTTGAGGTCAAACGAAGAGTTGCTGCTGATGGGAATCCACCAGTTCAGATGAGGCTCCATAAATCCTTGAGGCTTTGGACCTTTTATGTGGACTTGGAGGAGAGCCTGGGTACACTAGAGTCTACTCGGGCAGTGTATGAGAGGATATTGGATTTGAGAATAGCCACACCTCAAATAATAATCAACTTTGCATTGCTTCTGGAAGAACATAAATACTTTGAAGATGCATTCAAAGTCTATGAAAAGGGTACTCAAATATTCAAGTACCCGCATGTCAAAGACATATGGATTACATATCTCTCTAAATTTGTAAAAAGATATGGGAAGAATAAGCTCGAACGTGCAAGACTGCTCTTTGAGGATGCTGTTAAAGCGGCTCCTGCTGATGCGAAGAAACCTTTGTATCTTCAATTTGCAAAGCTGGAGGAGGATTATGGTCTAGCAAAGCGGGCTATGAAGGTCTATGATGAAGCAACTAAGGCTGTTCCAAACCATGAAAAGTTGAGCATGTATGAAATCTATATTGCCCGTGCAGCTGAGATATTTGGGATCCCCAAAACAAGGGAGATATATGAGCAAGCAATAGAATCTGGTCTCCCTGACAAAGATGTGAAGACAATGTGTCTAAAGTATGCTGAGCTCGAGAAGAGCTTGGGCGAAATTGATCGTGCTCGGGGAGTTTATGTATTTGCATCTCAATTTTCAGATCCACGATCGGATGCAGAATTCTGGAACAAATGGCACGAGTTTGAGGTGCAACACGGGAATGAAGATACGTTCAGAGAAATGCTTCGAATCAAACGGAGTGTTTCTGCAAGCTATAGCCAGACACACTTTATTCTACCTGAGTATATGATGCAAAAGGACCAGAGGTTGAGCATTGATGAGGCAAAAGACAAATTGAAACAGGCTGGAGTCCCCGAAGATGAAATGGCTGCTCTTGAGAGGCAGTTGGCTCCTGCGATCAGCGATACACCCTCTAAAGACAGCAACAGAAAAGTGGGCTTTGTGAGTGCTGGAATAGAATCACAGACTGATGGAGGGATAAAAGTTGCTGCAAATCACGAAGACATTGAACTACCAGAAGAAAGTGATTCTGAAGATGAGGCGAATGTTGAAATTGCACAAAAGGAGGTCCCAGCTGCTGTTTTTGGAGATTTGGCTAACAAGAGAAAGGATTCTGAAGATAATGAGGGTGGAGACAAGGATGGTGAGAGCCGCCTTGGTGCTCTTGAGAGAATAAAGAGGCTGAAGAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

918

Amino Acids

106.84

Weight (kDa)

5.67

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	12 - 170	1.3e-58	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	15 - 144	7.3e-09	PRP39 N-terminal HAT repeat
HAT_Syf1_M	PF23220	173 - 419	5.2e-80	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	421 - 815	8.2e-193	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
Suf	PF05843	524 - 667	5.2e-06	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	561 - 658	6.5e-07	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	879
AccB1I	GGYRCC	1 cut(s)	1182
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	3 cut(s)	483, 1014, 1616
AccII	CGCG	4 cut(s)	119, 153, 204, 307
AccIII	TCCGGA	1 cut(s)	1002
AclWI	GGATC	8 cut(s)	105, 451, 464, 1253, 1266, 2038, 2051, 2195
AcsI	RAATTY	3 cut(s)	1444, 1799, 2219
AcuI	CTGAAG	2 cut(s)	2613, 2697
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	6 cut(s)	191, 251, 494, 1606, 1744, 1760
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	4 cut(s)	421, 477, 1114, 2055
AflIII	ACRYGT	1 cut(s)	267
AhdI	GACNNNNNGTC	1 cut(s)	2115
AjnI	CCWGG	5 cut(s)	356, 1239, 1368, 1458, 1599
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
Alw21I	GWGCWC	5 cut(s)	219, 394, 2136, 2167, 2725
Alw26I	GTCTC	3 cut(s)	1147, 2093, 2688
AlwI	GGATC	8 cut(s)	105, 451, 464, 1253, 1266, 2038, 2051, 2195
AlwNI	CAGNNNCTG	2 cut(s)	334, 2639
Ama87I	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
Aor13HI	TCCGGA	1 cut(s)	1002
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	162, 579, 1362
ApeKI	GCWGC	7 cut(s)	403, 406, 1517, 2027, 2429, 2549, 2636
ApoI	RAATTY	3 cut(s)	1444, 1799, 2219
Asp700I	GAANNNNTTC	3 cut(s)	57, 2283, 2671
AspLEI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 210, 283, 385, 880
AspS9I	GGNCC	6 cut(s)	163, 1005, 1105, 1572, 2359, 2629
AsuC2I	CCSGG	2 cut(s)	171, 380
AsuHPI	GGTGA	4 cut(s)	346, 850, 1384, 2717
AsuII	TTCGAA	1 cut(s)	2287
AvaI	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
AvaII	GGWCC	5 cut(s)	1005, 1105, 1572, 2359, 2629
BaeI	ACNNNNGTAYC	2 cut(s)	1880, 1913
BamHI	GGATCC	3 cut(s)	456, 1258, 2043
BanI	GGYRCC	1 cut(s)	1182
BanII	GRGCYC	3 cut(s)	219, 1459, 2136
BauI	CACGAG	1 cut(s)	2237
BbsI	GAAGAC	5 cut(s)	629, 1129, 1256, 2114, 2568
Bbv12I	GWGCWC	5 cut(s)	219, 394, 2136, 2167, 2725
BbvI	GCAGC	7 cut(s)	415, 418, 1504, 2039, 2416, 2536, 2623
BccI	CCATC	6 cut(s)	149, 904, 1116, 1517, 2525, 2696
BceAI	ACGGC	4 cut(s)	140, 693, 1349, 1474
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	5 cut(s)	358, 1241, 1370, 1460, 1601
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	171, 380
BcoDI	GTCTC	3 cut(s)	1147, 2093, 2688
BfaI	CTAG	5 cut(s)	212, 1098, 1401, 1610, 1934
BfmI	CTRYAG	3 cut(s)	326, 1479, 2314
BfoI	RGCGCY	5 cut(s)	97, 136, 211, 284, 386
BglI	GCCNNNNNGGC	1 cut(s)	161
BlpI	GCTNAGC	3 cut(s)	1029, 1308, 2130
Bme1390I	CCNGG	7 cut(s)	171, 358, 380, 1241, 1370, 1460, 1601
Bme18I	GGWCC	5 cut(s)	1005, 1105, 1572, 2359, 2629
BmeRI	GACNNNNNGTC	1 cut(s)	2115
BmeT110I	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
BmgT120I	GGNCC	6 cut(s)	163, 1005, 1105, 1572, 2359, 2629
BmiI	GGNNCC	8 cut(s)	458, 1184, 1260, 1550, 1872, 2045, 2451, 2631
BmrFI	CCNGG	7 cut(s)	171, 358, 380, 1241, 1370, 1460, 1601
BmsI	GCATC	9 cut(s)	291, 691, 859, 1708, 1846, 1870, 2195, 2203, 2340
BpiI	GAAGAC	5 cut(s)	629, 1129, 1256, 2114, 2568
BpmI	CTGGAG	2 cut(s)	1937, 2427
Bpu1102I	GCTNAGC	3 cut(s)	1029, 1308, 2130
Bpu14I	TTCGAA	1 cut(s)	2287
BpuEI	CTTGAG	5 cut(s)	65, 1055, 1582, 2456, 2747
BpuMI	CCSGG	2 cut(s)	171, 380
BsaBI	GATNNNNATC	2 cut(s)	461, 1527
BsaHI	GRCGYC	1 cut(s)	758
BsaI	GGTCTC	1 cut(s)	2093
BsaJI	CCNNGG	9 cut(s)	169, 305, 582, 675, 1051, 1239, 1458, 1600, 2716
BsaWI	WCCGGW	5 cut(s)	397, 414, 486, 1002, 1185
BsaXI	ACNNNNNCTCC	2 cut(s)	2163, 2193
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 477, 1114, 2055
Bse1I	ACTGG	2 cut(s)	1137, 1535
Bse3DI	GCAATG	2 cut(s)	1184, 1685
Bse8I	GATNNNNATC	2 cut(s)	461, 1527
BseAI	TCCGGA	1 cut(s)	1002
BseBI	CCWGG	5 cut(s)	358, 1241, 1370, 1460, 1601
BseDI	CCNNGG	9 cut(s)	169, 305, 582, 675, 1051, 1239, 1458, 1600, 2716
BseGI	GGATG	6 cut(s)	706, 742, 814, 1861, 2218, 2707
BseJI	GATNNNNATC	2 cut(s)	461, 1527
BseLI	CCNNNNNNNGG	4 cut(s)	421, 477, 1114, 2055
BseMI	GCAATG	2 cut(s)	1184, 1685
BseMII	CTCAG	6 cut(s)	26, 540, 1020, 2022, 2121, 2331
BseNI	ACTGG	2 cut(s)	1137, 1535
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	8 cut(s)	799, 833, 953, 956, 1001, 1004, 1607, 1934
BseXI	GCAGC	7 cut(s)	415, 418, 1504, 2039, 2416, 2536, 2623
BseYI	CCCAGC	1 cut(s)	2632
BsgI	GTGCAG	2 cut(s)	422, 2046
Bsh1236I	CGCG	4 cut(s)	119, 153, 204, 307
Bsh1285I	CGRYCG	2 cut(s)	415, 2210
BshFI	GGCC	3 cut(s)	164, 581, 1364
BshNI	GGYRCC	1 cut(s)	1182
BsiEI	CGRYCG	2 cut(s)	415, 2210
BsiHKAI	GWGCWC	5 cut(s)	219, 394, 2136, 2167, 2725
BsiHKCI	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
BsiSI	CCGG	8 cut(s)	171, 367, 379, 398, 415, 487, 1003, 1186
BslFI	GGGAC	2 cut(s)	2396, 2615
BslI	CCNNNNNNNGG	4 cut(s)	421, 477, 1114, 2055
BsmAI	GTCTC	3 cut(s)	1147, 2093, 2688
BsmFI	GGGAC	2 cut(s)	2396, 2615
BsmI	GAATGC	2 cut(s)	676, 1721
BsnI	GGCC	3 cut(s)	164, 581, 1364
Bso31I	GGTCTC	1 cut(s)	2093
BsoBI	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
Bsp119I	TTCGAA	1 cut(s)	2287
Bsp1286I	GDGCHC	6 cut(s)	219, 394, 1459, 2136, 2167, 2725
Bsp13I	TCCGGA	1 cut(s)	1002
Bsp1720I	GCTNAGC	3 cut(s)	1029, 1308, 2130
Bsp19I	CCATGG	1 cut(s)	1051
BspANI	GGCC	3 cut(s)	164, 581, 1364
BspCNI	CTCAG	6 cut(s)	25, 541, 1021, 2023, 2122, 2332
BspEI	TCCGGA	1 cut(s)	1002
BspFNI	CGCG	4 cut(s)	119, 153, 204, 307
BspLI	GGNNCC	8 cut(s)	458, 1184, 1260, 1550, 1872, 2045, 2451, 2631
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	8 cut(s)	105, 451, 464, 1253, 1266, 2038, 2051, 2195
BspQI	GCTCTTC	3 cut(s)	48, 399, 2135
BspT104I	TTCGAA	1 cut(s)	2287
BspT107I	GGYRCC	1 cut(s)	1182
BspTNI	GGTCTC	1 cut(s)	2093
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	1184, 1685
BsrI	ACTGG	2 cut(s)	1137, 1535
BssECI	CCNNGG	9 cut(s)	169, 305, 582, 675, 1051, 1239, 1458, 1600, 2716
BssHII	GCGCGC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	758
BssSI	CACGAG	1 cut(s)	2237
BssT1I	CCWWGG	2 cut(s)	1051, 2716
Bst2BI	CACGAG	1 cut(s)	2237
Bst2UI	CCWGG	5 cut(s)	358, 1241, 1370, 1460, 1601
Bst4CI	ACNGT	4 cut(s)	835, 844, 1255, 1387
Bst6I	CTCTTC	6 cut(s)	48, 399, 882, 978, 1504, 2135
BstACI	GRCGYC	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	2287
BstC8I	GCNNGC	8 cut(s)	153, 206, 579, 900, 1269, 1944, 2073, 2311
BstDEI	CTNAG	9 cut(s)	12, 549, 666, 1029, 1308, 1971, 2031, 2130, 2340
BstDSI	CCRYGG	3 cut(s)	305, 675, 1051
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	6 cut(s)	706, 742, 814, 1861, 2218, 2707
BstFNI	CGCG	4 cut(s)	119, 153, 204, 307
BstH2I	RGCGCY	5 cut(s)	97, 136, 211, 284, 386
BstHHI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 210, 283, 385, 880
BstMAI	GTCTC	3 cut(s)	1147, 2093, 2688
BstMCI	CGRYCG	2 cut(s)	415, 2210
BstNI	CCWGG	5 cut(s)	358, 1241, 1370, 1460, 1601
BstNSI	RCATGY	2 cut(s)	1769, 2005
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	7 cut(s)	169, 356, 378, 1239, 1368, 1458, 1599
BstSFI	CTRYAG	3 cut(s)	326, 1479, 2314
BstUI	CGCG	4 cut(s)	119, 153, 204, 307
BstV1I	GCAGC	7 cut(s)	415, 418, 1504, 2039, 2416, 2536, 2623
BstV2I	GAAGAC	5 cut(s)	629, 1129, 1256, 2114, 2568
BstX2I	RGATCY	4 cut(s)	456, 1258, 2043, 2200
BstYI	RGATCY	4 cut(s)	456, 1258, 2043, 2200
BsuRI	GGCC	3 cut(s)	164, 581, 1364
BtgI	CCRYGG	3 cut(s)	305, 675, 1051
BtsCI	GGATG	6 cut(s)	706, 742, 814, 1861, 2218, 2707
BtsI	GCAGTG	2 cut(s)	1278, 1632
BtsIMutI	CAGTG	5 cut(s)	862, 1260, 1278, 1392, 1632
Cac8I	GCNNGC	8 cut(s)	153, 206, 579, 900, 1269, 1944, 2073, 2311
CaiI	CAGNNNCTG	2 cut(s)	334, 2639
CfoI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 210, 283, 385, 880
Cfr13I	GGNCC	6 cut(s)	163, 1005, 1105, 1572, 2359, 2629
Cfr42I	CCGCGG	1 cut(s)	308
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	6 cut(s)	190, 250, 493, 1605, 1743, 1759
CviAII	CATG	7 cut(s)	515, 1052, 1067, 1325, 1766, 1988, 2002
CviQI	GTAC	6 cut(s)	190, 250, 493, 1605, 1743, 1759
DdeI	CTNAG	9 cut(s)	12, 549, 666, 1029, 1308, 1971, 2031, 2130, 2340
DraI	TTTAAA	1 cut(s)	1450
DriI	GACNNNNNGTC	1 cut(s)	2115
Eam1104I	CTCTTC	6 cut(s)	48, 399, 882, 978, 1504, 2135
Eam1105I	GACNNNNNGTC	1 cut(s)	2115
EarI	CTCTTC	6 cut(s)	48, 399, 882, 978, 1504, 2135
EciI	GGCGGA	2 cut(s)	584, 782
Ecl136II	GAGCTC	2 cut(s)	217, 2134
Eco130I	CCWWGG	2 cut(s)	1051, 2716
Eco24I	GRGCYC	3 cut(s)	219, 1459, 2136
Eco31I	GGTCTC	1 cut(s)	2093
Eco47I	GGWCC	5 cut(s)	1005, 1105, 1572, 2359, 2629
Eco47III	AGCGCT	1 cut(s)	282
Eco53kI	GAGCTC	2 cut(s)	217, 2134
Eco57I	CTGAAG	2 cut(s)	2613, 2697
Eco88I	CYCGRG	4 cut(s)	804, 1620, 2135, 2166
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	2 cut(s)	217, 2134
EcoO109I	RGGNCCY	2 cut(s)	163, 2629
EcoO65I	GGTNACC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	2219
EcoRII	CCWGG	5 cut(s)	356, 1239, 1368, 1458, 1599
EcoT14I	CCWWGG	2 cut(s)	1051, 2716
EcoT22I	ATGCAT	1 cut(s)	1723
EcoT38I	GRGCYC	3 cut(s)	219, 1459, 2136
ErhI	CCWWGG	2 cut(s)	1051, 2716
FaeI	CATG	7 cut(s)	518, 1055, 1070, 1328, 1769, 1991, 2005
FalI	AAGNNNNNCTT	4 cut(s)	24, 56, 42, 74
FaqI	GGGAC	2 cut(s)	2396, 2615
FatI	CATG	7 cut(s)	514, 1051, 1066, 1324, 1765, 1987, 2001
FauI	CCCGC	2 cut(s)	1770, 1935
FauNDI	CATATG	1 cut(s)	1778
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	3 cut(s)	483, 1014, 1616
FokI	GGATG	6 cut(s)	713, 749, 821, 1868, 2225, 2714
FriOI	GRGCYC	3 cut(s)	219, 1459, 2136
FspBI	CTAG	5 cut(s)	212, 1098, 1401, 1610, 1934
FspI	TGCGCA	1 cut(s)	879
GlaI	GCGC	9 cut(s)	95, 120, 134, 152, 154, 209, 282, 384, 879
GsaI	CCCAGC	1 cut(s)	2636
GsuI	CTGGAG	2 cut(s)	1937, 2427
HaeII	RGCGCY	5 cut(s)	97, 136, 211, 284, 386
HaeIII	GGCC	3 cut(s)	164, 581, 1364
HapII	CCGG	8 cut(s)	171, 367, 379, 398, 415, 487, 1003, 1186
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 210, 283, 385, 880
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	7 cut(s)	518, 1055, 1070, 1328, 1769, 1991, 2005
Hin6I	GCGC	9 cut(s)	94, 119, 133, 151, 153, 208, 281, 383, 878
HinP1I	GCGC	9 cut(s)	94, 119, 133, 151, 153, 208, 281, 383, 878
HpaII	CCGG	8 cut(s)	171, 367, 379, 398, 415, 487, 1003, 1186
HphI	GGTGA	4 cut(s)	346, 850, 1384, 2717
Hpy166II	GTNNAC	8 cut(s)	484, 732, 756, 1015, 1375, 1585, 1607, 1617
Hpy8I	GTNNAC	8 cut(s)	484, 732, 756, 1015, 1375, 1585, 1607, 1617
Hpy99I	CGWCG	2 cut(s)	119, 763
HpyAV	CCTTC	6 cut(s)	50, 133, 445, 793, 941, 1945
HpyCH4III	ACNGT	4 cut(s)	835, 844, 1255, 1387
HpyCH4IV	ACGT	5 cut(s)	269, 758, 1289, 1834, 2270
HpyF3I	CTNAG	9 cut(s)	12, 549, 666, 1029, 1308, 1971, 2031, 2130, 2340
HpySE526I	ACGT	5 cut(s)	269, 758, 1289, 1834, 2270
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	7 cut(s)	518, 1055, 1070, 1328, 1769, 1991, 2005
HspAI	GCGC	9 cut(s)	94, 119, 133, 151, 153, 208, 281, 383, 878
Kpn2I	TCCGGA	1 cut(s)	1002
Ksp22I	TGATCA	1 cut(s)	598
KspI	CCGCGG	1 cut(s)	308
LguI	GCTCTTC	3 cut(s)	48, 399, 2135
LmnI	GCTCC	6 cut(s)	340, 424, 571, 1554, 1876, 2455
Lsp1109I	GCAGC	7 cut(s)	415, 418, 1504, 2039, 2416, 2536, 2623
LweI	GCATC	9 cut(s)	291, 691, 859, 1708, 1846, 1870, 2195, 2203, 2340
MaeI	CTAG	5 cut(s)	212, 1098, 1401, 1610, 1934
MaeII	ACGT	5 cut(s)	269, 758, 1289, 1834, 2270
MaeIII	GTNAC	3 cut(s)	286, 352, 838
MbiI	CCGCTC	1 cut(s)	574
MflI	RGATCY	4 cut(s)	456, 1258, 2043, 2200
MhlI	GDGCHC	6 cut(s)	219, 394, 1459, 2136, 2167, 2725
MlyI	GAGTC	5 cut(s)	355, 505, 554, 1622, 2418
MmeI	TCCRAC	2 cut(s)	138, 624
Mph1103I	ATGCAT	1 cut(s)	1723
MroI	TCCGGA	1 cut(s)	1002
MroXI	GAANNNNTTC	3 cut(s)	57, 2283, 2671
MseI	TTAA	7 cut(s)	591, 615, 723, 780, 906, 1449, 1863
MslI	CAYNNNNRTG	1 cut(s)	2259
MspA1I	CMGCKG	3 cut(s)	307, 2030, 2636
MspI	CCGG	8 cut(s)	171, 367, 379, 398, 415, 487, 1003, 1186
MspR9I	CCNGG	7 cut(s)	171, 358, 380, 1241, 1370, 1460, 1601
Mva1269I	GAATGC	2 cut(s)	676, 1721
MvaI	CCWGG	5 cut(s)	358, 1241, 1370, 1460, 1601
MvnI	CGCG	4 cut(s)	119, 153, 204, 307
NciI	CCSGG	2 cut(s)	171, 380
NcoI	CCATGG	1 cut(s)	1051
NdeI	CATATG	1 cut(s)	1778
NlaIII	CATG	7 cut(s)	518, 1055, 1070, 1328, 1769, 1991, 2005
NlaIV	GGNNCC	8 cut(s)	458, 1184, 1260, 1550, 1872, 2045, 2451, 2631
NmuCI	GTSAC	3 cut(s)	286, 352, 838
NsbI	TGCGCA	1 cut(s)	879
NsiI	ATGCAT	1 cut(s)	1723
NspI	RCATGY	2 cut(s)	1769, 2005
NspV	TTCGAA	1 cut(s)	2287
PaeR7I	CTCGAG	1 cut(s)	2135
PauI	GCGCGC	1 cut(s)	151
PciSI	GCTCTTC	3 cut(s)	48, 399, 2135
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 153
PctI	GAATGC	2 cut(s)	676, 1721
PdmI	GAANNNNTTC	3 cut(s)	57, 2283, 2671
PfeI	GAWTC	8 cut(s)	316, 1210, 1528, 2081, 2289, 2519, 2588, 2672
PflMI	CCANNNNNTGG	1 cut(s)	1114
Ple19I	CGATCG	1 cut(s)	2210
PleI	GAGTC	5 cut(s)	355, 505, 553, 1621, 2417
PpsI	GAGTC	5 cut(s)	355, 505, 553, 1621, 2417
PpuMI	RGGWCCY	1 cut(s)	2629
Psp124BI	GAGCTC	2 cut(s)	219, 2136
Psp5II	RGGWCCY	1 cut(s)	2629
Psp6I	CCWGG	5 cut(s)	356, 1239, 1368, 1458, 1599
PspEI	GGTNACC	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	2632
PspGI	CCWGG	5 cut(s)	356, 1239, 1368, 1458, 1599
PspN4I	GGNNCC	8 cut(s)	458, 1184, 1260, 1550, 1872, 2045, 2451, 2631
PspPI	GGNCC	6 cut(s)	163, 1005, 1105, 1572, 2359, 2629
PspPPI	RGGWCCY	1 cut(s)	2629
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	2 cut(s)	334, 2639
PsuI	RGATCY	4 cut(s)	456, 1258, 2043, 2200
PteI	GCGCGC	1 cut(s)	151
PvuI	CGATCG	1 cut(s)	2210
PvuII	CAGCTG	2 cut(s)	2030, 2636
RsaI	GTAC	6 cut(s)	191, 251, 494, 1606, 1744, 1760
RsaNI	GTAC	6 cut(s)	190, 250, 493, 1605, 1743, 1759
RseI	CAYNNNNRTG	1 cut(s)	2259
SacI	GAGCTC	2 cut(s)	219, 2136
SacII	CCGCGG	1 cut(s)	308
SapI	GCTCTTC	3 cut(s)	48, 399, 2135
SaqAI	TTAA	7 cut(s)	591, 615, 723, 780, 906, 1449, 1863
Sau96I	GGNCC	6 cut(s)	163, 1005, 1105, 1572, 2359, 2629
SchI	GAGTC	5 cut(s)	355, 505, 554, 1622, 2418
ScrFI	CCNGG	7 cut(s)	171, 358, 380, 1241, 1370, 1460, 1601
SduI	GDGCHC	6 cut(s)	219, 394, 1459, 2136, 2167, 2725
SfaNI	GCATC	9 cut(s)	291, 691, 859, 1708, 1846, 1870, 2195, 2203, 2340
SfcI	CTRYAG	3 cut(s)	326, 1479, 2314
Sfr274I	CTCGAG	1 cut(s)	2135
Sfr303I	CCGCGG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	2287
SgrBI	CCGCGG	1 cut(s)	308
SinI	GGWCC	5 cut(s)	1005, 1105, 1572, 2359, 2629
SlaI	CTCGAG	1 cut(s)	2135
SmiMI	CAYNNNNRTG	1 cut(s)	2259
SmlI	CTYRAG	6 cut(s)	80, 1034, 1561, 2135, 2435, 2726
SmoI	CTYRAG	6 cut(s)	80, 1034, 1561, 2135, 2435, 2726
SspI	AATATT	1 cut(s)	1752
SspMI	CTAG	5 cut(s)	212, 1098, 1401, 1610, 1934
SstI	GAGCTC	2 cut(s)	219, 2136
StyD4I	CCNGG	7 cut(s)	169, 356, 378, 1239, 1368, 1458, 1599
StyI	CCWWGG	2 cut(s)	1051, 2716
TaaI	ACNGT	4 cut(s)	835, 844, 1255, 1387
TaiI	ACGT	5 cut(s)	272, 761, 1292, 1837, 2273
TaqI	TCGA	5 cut(s)	273, 867, 1830, 2136, 2287
TauI	GCSGC	7 cut(s)	138, 307, 569, 577, 1438, 1871, 2715
TfiI	GAWTC	8 cut(s)	316, 1210, 1528, 2081, 2289, 2519, 2588, 2672
Tru1I	TTAA	7 cut(s)	591, 615, 723, 780, 906, 1449, 1863
Tru9I	TTAA	7 cut(s)	591, 615, 723, 780, 906, 1449, 1863
TscAI	CASTG	5 cut(s)	862, 1260, 1278, 1392, 1632
TseFI	GTSAC	3 cut(s)	286, 352, 838
TseI	GCWGC	7 cut(s)	403, 406, 1517, 2027, 2429, 2549, 2636
Tsp45I	GTSAC	3 cut(s)	286, 352, 838
TspDTI	ATGAA	8 cut(s)	1332, 1749, 1964, 1977, 2004, 2022, 2277, 2436
TspGWI	ACGGA	3 cut(s)	353, 749, 2311
TspRI	CASTG	5 cut(s)	862, 1260, 1278, 1392, 1632
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	5 cut(s)	1005, 1105, 1572, 2359, 2629
XapI	RAATTY	3 cut(s)	1444, 1799, 2219
XceI	RCATGY	2 cut(s)	1769, 2005
XhoI	CTCGAG	1 cut(s)	2135
XmiI	GTMKAC	3 cut(s)	483, 1014, 1616
XmnI	GAANNNNTTC	3 cut(s)	57, 2283, 2671
XspI	CTAG	5 cut(s)	212, 1098, 1401, 1610, 1934
ZraI	GACGTC	1 cut(s)	759
Zsp2I	ATGCAT	1 cut(s)	1723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.