Rmu_sc0001972.1_g000002

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001972.1
Physical Location & Seq
Forward (+)
2577 .. 6618
4042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001972.1_g000002.1.cds

Sequence Viewer

Length: 1116 bp
atggctatctctcaagaactctacccctcccaagacgacctcctctacgaagaagagcttctccgaaacccttacagcctcaagctctggtggcgctacctaatcgcccgatccgacgcccccttcaagaagcgccgcaccatctacgagcgcgccgtcaaggccctccccggaagctacaagctctgctggaaacagataaaattacaccctctagtgttttactgggctcctgctgatgcgaagaaacctttgtatcttcaatttgcaaagctggaggaggattatggtctagcgaagcgggctatgaaggtctatgatgaagcaactaaggctgttccaaaccatgaaaagttgagcatgtatgaaatctatattgcccgtgcagctgagatatttgggatccccaaaacaagggagatatatgagcaagcaatagaatctggtctccctgacaaagatgtgaagacaatgtgcctaaagtatgctgagctcgagaagagcttgggcgaaattgatcgtgctcggggagtttatgtatttgcatctcaattttcagatccacgatcggatgcagaattctggaacaaatggcacgagtttgaggtgcaacatgggaatgaagatacgttcagagaaatgcttcgaatcaaacggagtgtttctgcaagctatagccagacacactttattctacctgagtacatgatgcaaaaggaccagaggttgagcattgatgaggcaaaagacaaattgaaacaggctggagtccccgaagatgaaatggctgctcttgagaggcagttggctcctgcgatcagcgatacaccctctaaagacagcaacagaaaagtgggctttgtgagtgctggaatagaatcacagactgatggagggataaaagttgctgcaaatcacgaagacattgaactcccagaagaaagtgattctgaagatgaggcgaatgttgaaattgcacagaaggaggtcccagctgctgtttttggagatttggctaacaagagaaaggattctgaagataatgagggcggagacaaggatggtgagagccgccttggtgctcttgagagaataaagaggctgaagaaagtgtga

Protein Analysis

371

Amino Acids

42.57

Weight (kDa)

5.39

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 4 cut(s) 136, 301, 1050, 1072
AclWI GGATC 4 cut(s) 105, 397, 410, 554
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 2 cut(s) 972, 1056
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 5 cut(s) 127, 263, 757, 929, 971
Alw21I GWGCWC 3 cut(s) 495, 526, 1084
Alw26I GTCTC 2 cut(s) 452, 1047
AlwI GGATC 4 cut(s) 105, 397, 410, 554
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 2 cut(s) 494, 525
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 4 cut(s) 386, 788, 908, 995
ApoI RAATTY 1 cut(s) 578
Asp700I GAANNNNTTC 3 cut(s) 57, 642, 1030
AspLEI GCGC 4 cut(s) 96, 135, 153, 155
AspS9I GGNCC 3 cut(s) 163, 718, 988
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 1076
AsuII TTCGAA 1 cut(s) 646
AvaI CYCGRG 2 cut(s) 494, 525
AvaII GGWCC 2 cut(s) 718, 988
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BamHI GGATCC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 232, 495
BauI CACGAG 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 473, 927
Bbv12I GWGCWC 3 cut(s) 495, 526, 1084
BbvI GCAGC 4 cut(s) 398, 775, 895, 982
BccI CCATC 3 cut(s) 149, 884, 1055
BceAI ACGGC 1 cut(s) 140
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 452, 1047
BfaI CTAG 2 cut(s) 215, 293
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 2 cut(s) 97, 136
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 6 cut(s) 136, 387, 789, 909, 996, 1072
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 6 cut(s) 137, 388, 790, 910, 997, 1073
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 2 cut(s) 718, 988
BmeT110I CYCGRG 2 cut(s) 494, 525
BmgT120I GGNCC 3 cut(s) 163, 718, 988
BmiI GGNNCC 4 cut(s) 231, 404, 810, 990
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 4 cut(s) 229, 554, 562, 699
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 2 cut(s) 473, 927
BpmI CTGGAG 2 cut(s) 296, 786
Bpu1102I GCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 3 cut(s) 65, 815, 1106
BpuMI CCSGG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 169, 1075
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 169, 1075
BseGI GGATG 2 cut(s) 577, 1066
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 3 cut(s) 381, 480, 690
BseNI ACTGG 1 cut(s) 230
BsePI GCGCGC 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 32, 293
BseXI GCAGC 4 cut(s) 398, 775, 895, 982
BseYI CCCAGC 1 cut(s) 991
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 3 cut(s) 495, 526, 1084
BsiHKCI CYCGRG 2 cut(s) 494, 525
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 755, 974
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 452, 1047
BsmFI GGGAC 2 cut(s) 755, 974
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 2 cut(s) 494, 525
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 4 cut(s) 232, 495, 526, 1084
Bsp143I GATC 6 cut(s) 110, 402, 517, 559, 566, 816
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 4 cut(s) 136, 301, 1050, 1072
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 382, 481, 691
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 231, 404, 810, 990
BspPI GGATC 4 cut(s) 105, 397, 410, 554
BspQI GCTCTTC 2 cut(s) 48, 494
BspT104I TTCGAA 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 169, 1075
BssHII GCGCGC 1 cut(s) 151
BssMI GATC 6 cut(s) 110, 402, 517, 559, 566, 816
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 1 cut(s) 1075
Bst2BI CACGAG 1 cut(s) 596
Bst6I CTCTTC 2 cut(s) 48, 494
BstACI GRCGYC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 4 cut(s) 153, 303, 432, 670
BstDEI CTNAG 4 cut(s) 330, 390, 489, 699
BstF5I GGATG 2 cut(s) 577, 1066
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 97, 136
BstHHI GCGC 4 cut(s) 96, 135, 153, 155
BstKTI GATC 6 cut(s) 113, 405, 520, 562, 569, 819
BstMAI GTCTC 2 cut(s) 452, 1047
BstMBI GATC 6 cut(s) 110, 402, 517, 559, 566, 816
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 5 cut(s) 91, 161, 302, 332, 386
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 673
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 398, 775, 895, 982
BstV2I GAAGAC 2 cut(s) 473, 927
BstX2I RGATCY 2 cut(s) 402, 559
BstYI RGATCY 2 cut(s) 402, 559
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 577, 1066
Cac8I GCNNGC 4 cut(s) 153, 303, 432, 670
CaiI CAGNNNCTG 1 cut(s) 998
CfoI GCGC 4 cut(s) 96, 135, 153, 155
Cfr13I GGNCC 3 cut(s) 163, 718, 988
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 703
CviAII CATG 4 cut(s) 347, 361, 614, 706
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 4 cut(s) 330, 390, 489, 699
DpnI GATC 6 cut(s) 112, 404, 519, 561, 568, 818
DpnII GATC 6 cut(s) 110, 402, 517, 559, 566, 816
Eam1104I CTCTTC 2 cut(s) 48, 494
EarI CTCTTC 2 cut(s) 48, 494
EciI GGCGGA 1 cut(s) 1065
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 2 cut(s) 232, 495
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 718, 988
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 972, 1056
Eco88I CYCGRG 2 cut(s) 494, 525
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 2 cut(s) 163, 988
EcoRI GAATTC 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 1075
EcoT38I GRGCYC 2 cut(s) 232, 495
ErhI CCWWGG 1 cut(s) 1075
FaeI CATG 4 cut(s) 350, 364, 617, 709
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 755, 974
FatI CATG 4 cut(s) 346, 360, 613, 705
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 6 cut(s) 136, 387, 789, 909, 996, 1072
FokI GGATG 2 cut(s) 584, 1073
FriOI GRGCYC 2 cut(s) 232, 495
Fsp4HI GCNGC 6 cut(s) 136, 387, 789, 909, 996, 1072
FspBI CTAG 2 cut(s) 215, 293
GlaI GCGC 4 cut(s) 95, 134, 152, 154
GluI GCNGC 6 cut(s) 136, 387, 789, 909, 996, 1072
GsaI CCCAGC 1 cut(s) 995
GsuI CTGGAG 2 cut(s) 296, 786
HaeII RGCGCY 2 cut(s) 97, 136
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 125
HhaI GCGC 4 cut(s) 96, 135, 153, 155
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 4 cut(s) 350, 364, 617, 709
Hin6I GCGC 4 cut(s) 94, 133, 151, 153
HinP1I GCGC 4 cut(s) 94, 133, 151, 153
HinfI GANTC 6 cut(s) 440, 648, 768, 878, 947, 1031
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 1076
Hpy188I TCNGA 7 cut(s) 65, 115, 559, 571, 635, 952, 1036
Hpy188III TCNNGA 7 cut(s) 14, 127, 496, 583, 794, 917, 1085
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 133, 304, 976
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 9 cut(s) 269, 386, 545, 575, 610, 668, 712, 911, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 161, 302, 332, 386
HpyF3I CTNAG 4 cut(s) 330, 390, 489, 699
HpySE526I ACGT 1 cut(s) 629
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 4 cut(s) 350, 364, 617, 709
HspAI GCGC 4 cut(s) 94, 133, 151, 153
Kzo9I GATC 6 cut(s) 110, 402, 517, 559, 566, 816
LguI GCTCTTC 2 cut(s) 48, 494
LmnI GCTCC 2 cut(s) 235, 814
Lsp1109I GCAGC 4 cut(s) 398, 775, 895, 982
LweI GCATC 4 cut(s) 229, 554, 562, 699
MaeI CTAG 2 cut(s) 215, 293
MaeII ACGT 1 cut(s) 629
MalI GATC 6 cut(s) 112, 404, 519, 561, 568, 818
MboI GATC 6 cut(s) 110, 402, 517, 559, 566, 816
MflI RGATCY 2 cut(s) 402, 559
MhlI GDGCHC 4 cut(s) 232, 495, 526, 1084
MluCI AATT 7 cut(s) 203, 263, 513, 551, 578, 752, 972
MlyI GAGTC 1 cut(s) 777
MmeI TCCRAC 1 cut(s) 138
MroXI GAANNNNTTC 3 cut(s) 57, 642, 1030
MslI CAYNNNNRTG 1 cut(s) 618
MspA1I CMGCKG 2 cut(s) 389, 995
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 5 cut(s) 91, 161, 302, 332, 386
NciI CCSGG 1 cut(s) 171
NdeII GATC 6 cut(s) 110, 402, 517, 559, 566, 816
NlaIII CATG 4 cut(s) 350, 364, 617, 709
NlaIV GGNNCC 4 cut(s) 231, 404, 810, 990
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 494
PauI GCGCGC 1 cut(s) 151
PciSI GCTCTTC 2 cut(s) 48, 494
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 153
PdmI GAANNNNTTC 3 cut(s) 57, 642, 1030
PfeI GAWTC 5 cut(s) 440, 648, 878, 947, 1031
PkrI GCNGC 6 cut(s) 137, 388, 790, 910, 997, 1073
Ple19I CGATCG 1 cut(s) 569
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 988
Psp124BI GAGCTC 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 988
PspFI CCCAGC 1 cut(s) 991
PspN4I GGNNCC 4 cut(s) 231, 404, 810, 990
PspPI GGNCC 3 cut(s) 163, 718, 988
PspPPI RGGWCCY 1 cut(s) 988
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 2 cut(s) 402, 559
PteI GCGCGC 1 cut(s) 151
PvuI CGATCG 1 cut(s) 569
PvuII CAGCTG 2 cut(s) 389, 995
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
RseI CAYNNNNRTG 1 cut(s) 618
SacI GAGCTC 1 cut(s) 495
SapI GCTCTTC 2 cut(s) 48, 494
SatI GCNGC 6 cut(s) 136, 387, 789, 909, 996, 1072
Sau3AI GATC 6 cut(s) 110, 402, 517, 559, 566, 816
Sau96I GGNCC 3 cut(s) 163, 718, 988
SchI GAGTC 1 cut(s) 777
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 4 cut(s) 232, 495, 526, 1084
SfaNI GCATC 4 cut(s) 229, 554, 562, 699
SfcI CTRYAG 1 cut(s) 673
Sfr274I CTCGAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 718, 988
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 5 cut(s) 12, 80, 494, 794, 1085
SmoI CTYRAG 5 cut(s) 12, 80, 494, 794, 1085
Sse9I AATT 7 cut(s) 203, 263, 513, 551, 578, 752, 972
SsiI CCGC 4 cut(s) 136, 301, 1050, 1072
SspMI CTAG 2 cut(s) 215, 293
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 1075
TaiI ACGT 1 cut(s) 632
TaqI TCGA 2 cut(s) 495, 646
TasI AATT 7 cut(s) 203, 263, 513, 551, 578, 752, 972
TatI WGTACW 1 cut(s) 702
TauI GCSGC 2 cut(s) 138, 1074
TfiI GAWTC 5 cut(s) 440, 648, 878, 947, 1031
TseI GCWGC 4 cut(s) 386, 788, 908, 995
TspDTI ATGAA 6 cut(s) 323, 336, 363, 381, 636, 795
TspGWI ACGGA 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 718, 988
XapI RAATTY 1 cut(s) 578
XceI RCATGY 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 494
XmnI GAANNNNTTC 3 cut(s) 57, 642, 1030
XspI CTAG 2 cut(s) 215, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.