Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

5197006 .. 5202044

Gene Structure 5039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

ATGCAGACTGTGGTGACTGTGAGGGATTTCAGTGTGATTTTCGATGCGTATGCGCAGTTTGAAGAGAGTATGCTTGCGATTAAGATGGAGGCTTTGGGGAGTGATGAGGAGGACGAGGAGGAAGGAGAGAATGGGAGAATGGAAGATGAGAGAAGTGAAGAGGAGGAGGAAGATGTCCGGACCAATGTAGACTTGTCTGTGGCTGAGCTTGAGAGGAAAATACTCCATGGGTTTTGGCTACATGATGAGAATGATGTTGATTTGAGGTTGGCTAGATTGGACCATCTTATGGATAGAAGACCCGAACTGGCTAATAGTGTTCTTTTGAGACAAAATCCACATAATGTAGAGCAATGGCACCGGAGAGTGAAGCTGTTTGAGGGGAATCCTACAAAGCAGATACTTACTTACACCCAGGCTGTGAAGACAGTGGATCCAATGCAAGCAGTGGGGAAGCCTCATACGTTGTGGGTTGCTTTTGCTAAGCTGTATGAAACACATGGAGATATTGCAAATGCAAGAGTAATTTTTGATAAGGCCGTCCAGGTGAACTACAAGACAGTGGATAATCTGGCTAGTCTATGGTGTGAGTGGGCAGAAATGGAATTGCGGCATAAGAATTTTAAACGAGCCCTGGAACTGATGAGCAGAGCTACAGCAGAGCCGTCTGTTGAGGTCAAACGAAGAGTTGCTGCTGATGGGAATCCACCAGTTCAGATGAGGCTCCATAAATCCTTGAGGCTGTGGACCTTTTATGTGGACTTGGAGGAGAGCCTGGGTACACTAGAGTCTACTCGGGCAGTGTATGAGAGGATATTGGATTTGAGAATAGCCACACCTCAAATAATAATCAACTATGCATTGCTTCTGGAAGAACATAAATACTTTGAAGATGCATTCAAAGTCTATGAAAAGGGTACTCAAATATTCAAGTACCCGCATGTCAAAGACATATGGATTACATATCTCTCTAAATTTGTAAAAAGATATGGGAAGAATAAGCTCGAACGTGCAAGACTGCTCTTTGAGGATGCTGTTAAAGCGGCTCCTGCTGATGCGAAGAAACCTTTGTATCTTCAATTTGCAAAGCTGGAGGAGGATTATGGTCTAGCGAAGCGGGCTATGAAGGTCTATGATGAAGCAACTAAGGCTGTTCCAAACCATGAAAAGTTGAGCATGTATGAAATCTATATTGCCCGTGCAGCTGAGATATTTGGGATCCCCAAAACAAGGGAGATATATGAGCAAGCAATAGAATCTGGTCTCCCTGACAAAGATGTGAAGACAATGTGCCTAAAGTATGCTGAGCTCGAGAAGAGCTTGGGCGAAATTGATCGTGCTCGGGGAGTTTATGTATTTGCATCTCAATTTTCAGATCCACGATCGGATGCAGAATTCTGGAACAAATGGCACGAGTTTGAGGTGCAACATGGGAATGAAGATACGTTCAGAGAAATGCTTCGAATCAAACGGAGTGTTTCTGCAAGCTATAGCCAGACACACTTTATTCTACCTGAGTACATGATGCAAAAGGACCAGAGGTTGAGCATTGATGAGGCAAAAGACAAATTGAAACAGGCTGGAGTCCCCGAAGATGAAATGGCTGCTCTTGAGAGGCAGTTGGCTCCTGCGATCAGCGATACACCCTCTAAAGACAGCAACAGAAAAGTGGGCTTTGTGAGTGCTGGAATAGAATCACAGACTGATGGAGGGATAAAAGTTGCTGCAAATCACGAAGACATTGAACTCCCAGAAGAAAGTGATTCTGAAGATGAGGCGAATGTTGAAATTGCACAGAAGGAGGTCCCAGCTGCTGTTTTTGGAGATTTGGCTAACAAGAGAAAGGATTCTGAAGATAATGAGGGCGGAGACAAGGATGGTGAGAGCCGCCTTGGTGCTCTTGAGAGAATAAAGAGGCTGAAGAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

643

Amino Acids

74.04

Weight (kDa)

5.23

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_M	PF23220	1 - 44	1.5e-09	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_M	PF23220	81 - 144	6.7e-24	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	146 - 540	1.1e-193	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_C	PF23241	244 - 311	4e-06	PRP39 C-terminal HAT repeat
Suf	PF05843	249 - 392	6e-06	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	189, 791
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	6 cut(s)	610, 938, 1043, 1117, 1866, 1888
AclWI	GGATC	5 cut(s)	428, 441, 1213, 1226, 1370
AcsI	RAATTY	3 cut(s)	619, 974, 1394
AcuI	CTGAAG	2 cut(s)	1788, 1872
AfaI	GTAC	4 cut(s)	781, 919, 935, 1520
AfiI	CCNNNNNNNGG	2 cut(s)	289, 1230
AgsI	TTSAA	8 cut(s)	62, 890, 901, 931, 1079, 1573, 1745, 1787
AjnI	CCWGG	4 cut(s)	414, 543, 633, 774
Alw21I	GWGCWC	3 cut(s)	1311, 1342, 1900
Alw26I	GTCTC	3 cut(s)	322, 1268, 1863
AlwI	GGATC	5 cut(s)	428, 441, 1213, 1226, 1370
AlwNI	CAGNNNCTG	1 cut(s)	1814
Ama87I	CYCGRG	3 cut(s)	795, 1310, 1341
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	5 cut(s)	692, 1202, 1604, 1724, 1811
ApoI	RAATTY	3 cut(s)	619, 974, 1394
Asp700I	GAANNNNTTC	2 cut(s)	1458, 1846
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	5 cut(s)	180, 280, 747, 1534, 1804
AsuHPI	GGTGA	3 cut(s)	25, 559, 1892
AsuII	TTCGAA	1 cut(s)	1462
AvaI	CYCGRG	3 cut(s)	795, 1310, 1341
AvaII	GGWCC	5 cut(s)	180, 280, 747, 1534, 1804
BaeI	ACNNNNGTAYC	2 cut(s)	1055, 1088
BamHI	GGATCC	2 cut(s)	433, 1218
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	2 cut(s)	634, 1311
BauI	CACGAG	1 cut(s)	1412
BbsI	GAAGAC	4 cut(s)	304, 431, 1289, 1743
Bbv12I	GWGCWC	3 cut(s)	1311, 1342, 1900
BbvI	GCAGC	5 cut(s)	679, 1214, 1591, 1711, 1798
BccI	CCATC	5 cut(s)	79, 291, 692, 1700, 1871
BceAI	ACGGC	2 cut(s)	524, 649
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	4 cut(s)	416, 545, 635, 776
BcoDI	GTCTC	3 cut(s)	322, 1268, 1863
BfaI	CTAG	4 cut(s)	273, 576, 785, 1109
BfmI	CTRYAG	2 cut(s)	654, 1489
BisI	GCNGC	8 cut(s)	611, 693, 1044, 1203, 1605, 1725, 1812, 1888
BlpI	GCTNAGC	3 cut(s)	204, 483, 1305
BlsI	GCNGC	8 cut(s)	612, 694, 1045, 1204, 1606, 1726, 1813, 1889
Bme1390I	CCNGG	4 cut(s)	416, 545, 635, 776
Bme18I	GGWCC	5 cut(s)	180, 280, 747, 1534, 1804
BmeT110I	CYCGRG	3 cut(s)	795, 1310, 1341
BmgT120I	GGNCC	5 cut(s)	180, 280, 747, 1534, 1804
BmiI	GGNNCC	7 cut(s)	359, 435, 725, 1047, 1220, 1626, 1806
BmrFI	CCNGG	4 cut(s)	416, 545, 635, 776
BmsI	GCATC	7 cut(s)	34, 883, 1021, 1045, 1370, 1378, 1515
BpiI	GAAGAC	4 cut(s)	304, 431, 1289, 1743
BpmI	CTGGAG	2 cut(s)	1112, 1602
Bpu1102I	GCTNAGC	3 cut(s)	204, 483, 1305
Bpu14I	TTCGAA	1 cut(s)	1462
BpuEI	CTTGAG	4 cut(s)	230, 757, 1631, 1922
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	1268
BsaJI	CCNNGG	5 cut(s)	226, 414, 633, 775, 1891
BsaWI	WCCGGW	2 cut(s)	177, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	1338, 1368
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 1230
Bse1I	ACTGG	2 cut(s)	312, 710
Bse3DI	GCAATG	2 cut(s)	359, 860
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	4 cut(s)	416, 545, 635, 776
BseDI	CCNNGG	5 cut(s)	226, 414, 633, 775, 1891
BseGI	GGATG	3 cut(s)	1036, 1393, 1882
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	289, 1230
BseMI	GCAATG	2 cut(s)	359, 860
BseMII	CTCAG	4 cut(s)	195, 1197, 1296, 1506
BseNI	ACTGG	2 cut(s)	312, 710
BseRI	GAGGAG	6 cut(s)	122, 131, 176, 179, 782, 1109
BseXI	GCAGC	5 cut(s)	679, 1214, 1591, 1711, 1798
BseYI	CCCAGC	1 cut(s)	1807
BsgI	GTGCAG	1 cut(s)	1221
Bsh1285I	CGRYCG	1 cut(s)	1385
BshFI	GGCC	1 cut(s)	539
BshNI	GGYRCC	1 cut(s)	357
BsiEI	CGRYCG	1 cut(s)	1385
BsiHKAI	GWGCWC	3 cut(s)	1311, 1342, 1900
BsiHKCI	CYCGRG	3 cut(s)	795, 1310, 1341
BsiSI	CCGG	2 cut(s)	178, 361
BslFI	GGGAC	2 cut(s)	1571, 1790
BslI	CCNNNNNNNGG	2 cut(s)	289, 1230
BsmAI	GTCTC	3 cut(s)	322, 1268, 1863
BsmFI	GGGAC	2 cut(s)	1571, 1790
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	1268
BsoBI	CYCGRG	3 cut(s)	795, 1310, 1341
Bsp119I	TTCGAA	1 cut(s)	1462
Bsp1286I	GDGCHC	4 cut(s)	634, 1311, 1342, 1900
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
Bsp1720I	GCTNAGC	3 cut(s)	204, 483, 1305
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	6 cut(s)	610, 938, 1043, 1117, 1866, 1888
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	4 cut(s)	196, 1198, 1297, 1507
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	7 cut(s)	359, 435, 725, 1047, 1220, 1626, 1806
BspPI	GGATC	5 cut(s)	428, 441, 1213, 1226, 1370
BspQI	GCTCTTC	1 cut(s)	1310
BspT104I	TTCGAA	1 cut(s)	1462
BspT107I	GGYRCC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	1268
BsrDI	GCAATG	2 cut(s)	359, 860
BsrI	ACTGG	2 cut(s)	312, 710
BssECI	CCNNGG	5 cut(s)	226, 414, 633, 775, 1891
BssMI	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
BssSI	CACGAG	1 cut(s)	1412
BssT1I	CCWWGG	2 cut(s)	226, 1891
Bst2BI	CACGAG	1 cut(s)	1412
Bst2UI	CCWGG	4 cut(s)	416, 545, 635, 776
Bst4CI	ACNGT	4 cut(s)	10, 19, 430, 562
Bst6I	CTCTTC	4 cut(s)	57, 153, 679, 1310
BstBI	TTCGAA	1 cut(s)	1462
BstC8I	GCNNGC	5 cut(s)	75, 444, 1119, 1248, 1486
BstDEI	CTNAG	6 cut(s)	204, 483, 1146, 1206, 1305, 1515
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	1036, 1393, 1882
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	436, 1221, 1336, 1378, 1385, 1635
BstMAI	GTCTC	3 cut(s)	322, 1268, 1863
BstMBI	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
BstMCI	CGRYCG	1 cut(s)	1385
BstMWI	GCNNNNNNNGC	5 cut(s)	1040, 1049, 1118, 1148, 1202
BstNI	CCWGG	4 cut(s)	416, 545, 635, 776
BstNSI	RCATGY	2 cut(s)	944, 1180
BstSCI	CCNGG	4 cut(s)	414, 543, 633, 774
BstSFI	CTRYAG	2 cut(s)	654, 1489
BstV1I	GCAGC	5 cut(s)	679, 1214, 1591, 1711, 1798
BstV2I	GAAGAC	4 cut(s)	304, 431, 1289, 1743
BstX2I	RGATCY	3 cut(s)	433, 1218, 1375
BstYI	RGATCY	3 cut(s)	433, 1218, 1375
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	1036, 1393, 1882
BtsI	GCAGTG	2 cut(s)	453, 807
BtsIMutI	CAGTG	5 cut(s)	37, 435, 453, 567, 807
Cac8I	GCNNGC	5 cut(s)	75, 444, 1119, 1248, 1486
CaiI	CAGNNNCTG	1 cut(s)	1814
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	5 cut(s)	180, 280, 747, 1534, 1804
Csp6I	GTAC	4 cut(s)	780, 918, 934, 1519
CviAII	CATG	8 cut(s)	227, 242, 500, 941, 1163, 1177, 1430, 1522
CviQI	GTAC	4 cut(s)	780, 918, 934, 1519
DdeI	CTNAG	6 cut(s)	204, 483, 1146, 1206, 1305, 1515
DpnI	GATC	6 cut(s)	435, 1220, 1335, 1377, 1384, 1634
DpnII	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	4 cut(s)	57, 153, 679, 1310
EarI	CTCTTC	4 cut(s)	57, 153, 679, 1310
EciI	GGCGGA	1 cut(s)	1881
Ecl136II	GAGCTC	1 cut(s)	1309
Eco130I	CCWWGG	2 cut(s)	226, 1891
Eco24I	GRGCYC	2 cut(s)	634, 1311
Eco31I	GGTCTC	1 cut(s)	1268
Eco47I	GGWCC	5 cut(s)	180, 280, 747, 1534, 1804
Eco53kI	GAGCTC	1 cut(s)	1309
Eco57I	CTGAAG	2 cut(s)	1788, 1872
Eco88I	CYCGRG	3 cut(s)	795, 1310, 1341
EcoICRI	GAGCTC	1 cut(s)	1309
EcoO109I	RGGNCCY	1 cut(s)	1804
EcoRI	GAATTC	1 cut(s)	1394
EcoRII	CCWGG	4 cut(s)	414, 543, 633, 774
EcoT14I	CCWWGG	2 cut(s)	226, 1891
EcoT22I	ATGCAT	2 cut(s)	862, 898
EcoT38I	GRGCYC	2 cut(s)	634, 1311
ErhI	CCWWGG	2 cut(s)	226, 1891
FaeI	CATG	8 cut(s)	230, 245, 503, 944, 1166, 1180, 1433, 1525
FaqI	GGGAC	2 cut(s)	1571, 1790
FatI	CATG	8 cut(s)	226, 241, 499, 940, 1162, 1176, 1429, 1521
FauI	CCCGC	2 cut(s)	945, 1110
FauNDI	CATATG	1 cut(s)	953
FblI	GTMKAC	2 cut(s)	189, 791
Fnu4HI	GCNGC	8 cut(s)	611, 693, 1044, 1203, 1605, 1725, 1812, 1888
FokI	GGATG	3 cut(s)	1043, 1400, 1889
FriOI	GRGCYC	2 cut(s)	634, 1311
Fsp4HI	GCNGC	8 cut(s)	611, 693, 1044, 1203, 1605, 1725, 1812, 1888
FspBI	CTAG	4 cut(s)	273, 576, 785, 1109
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	8 cut(s)	611, 693, 1044, 1203, 1605, 1725, 1812, 1888
GsaI	CCCAGC	1 cut(s)	1811
GsuI	CTGGAG	2 cut(s)	1112, 1602
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	2 cut(s)	178, 361
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	8 cut(s)	230, 245, 503, 944, 1166, 1180, 1433, 1525
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	9 cut(s)	385, 703, 788, 1256, 1464, 1584, 1694, 1763, 1847
HpaII	CCGG	2 cut(s)	178, 361
HphI	GGTGA	3 cut(s)	25, 559, 1892
Hpy166II	GTNNAC	6 cut(s)	190, 550, 747, 760, 782, 792
Hpy188I	TCNGA	6 cut(s)	717, 1375, 1387, 1451, 1768, 1852
Hpy188III	TCNNGA	7 cut(s)	178, 869, 1312, 1399, 1610, 1733, 1901
Hpy8I	GTNNAC	6 cut(s)	190, 550, 747, 760, 782, 792
HpyAV	CCTTC	3 cut(s)	116, 1120, 1792
HpyCH4III	ACNGT	4 cut(s)	10, 19, 430, 562
HpyCH4IV	ACGT	3 cut(s)	464, 1009, 1445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1040, 1049, 1118, 1148, 1202
HpyF3I	CTNAG	6 cut(s)	204, 483, 1146, 1206, 1305, 1515
HpySE526I	ACGT	3 cut(s)	464, 1009, 1445
Hsp92II	CATG	8 cut(s)	230, 245, 503, 944, 1166, 1180, 1433, 1525
HspAI	GCGC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
LguI	GCTCTTC	1 cut(s)	1310
LmnI	GCTCC	3 cut(s)	729, 1051, 1630
Lsp1109I	GCAGC	5 cut(s)	679, 1214, 1591, 1711, 1798
LweI	GCATC	7 cut(s)	34, 883, 1021, 1045, 1370, 1378, 1515
MaeI	CTAG	4 cut(s)	273, 576, 785, 1109
MaeII	ACGT	3 cut(s)	464, 1009, 1445
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	6 cut(s)	435, 1220, 1335, 1377, 1384, 1634
MboI	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
MflI	RGATCY	3 cut(s)	433, 1218, 1375
MhlI	GDGCHC	4 cut(s)	634, 1311, 1342, 1900
MlyI	GAGTC	2 cut(s)	797, 1593
Mph1103I	ATGCAT	2 cut(s)	862, 898
MroI	TCCGGA	1 cut(s)	177
MroXI	GAANNNNTTC	2 cut(s)	1458, 1846
MseI	TTAA	3 cut(s)	81, 624, 1038
MslI	CAYNNNNRTG	1 cut(s)	1434
MspA1I	CMGCKG	2 cut(s)	1205, 1811
MspI	CCGG	2 cut(s)	178, 361
MspR9I	CCNGG	4 cut(s)	416, 545, 635, 776
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	4 cut(s)	416, 545, 635, 776
MwoI	GCNNNNNNNGC	5 cut(s)	1040, 1049, 1118, 1148, 1202
NcoI	CCATGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	953
NdeII	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
NlaIII	CATG	8 cut(s)	230, 245, 503, 944, 1166, 1180, 1433, 1525
NlaIV	GGNNCC	7 cut(s)	359, 435, 725, 1047, 1220, 1626, 1806
NmuCI	GTSAC	1 cut(s)	13
NsbI	TGCGCA	1 cut(s)	54
NsiI	ATGCAT	2 cut(s)	862, 898
NspI	RCATGY	2 cut(s)	944, 1180
NspV	TTCGAA	1 cut(s)	1462
PaeR7I	CTCGAG	1 cut(s)	1310
PciSI	GCTCTTC	1 cut(s)	1310
PctI	GAATGC	1 cut(s)	896
PdmI	GAANNNNTTC	2 cut(s)	1458, 1846
PfeI	GAWTC	7 cut(s)	385, 703, 1256, 1464, 1694, 1763, 1847
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	8 cut(s)	612, 694, 1045, 1204, 1606, 1726, 1813, 1889
Ple19I	CGATCG	1 cut(s)	1385
PleI	GAGTC	2 cut(s)	796, 1592
PpsI	GAGTC	2 cut(s)	796, 1592
PpuMI	RGGWCCY	1 cut(s)	1804
Psp124BI	GAGCTC	1 cut(s)	1311
Psp5II	RGGWCCY	1 cut(s)	1804
Psp6I	CCWGG	4 cut(s)	414, 543, 633, 774
PspFI	CCCAGC	1 cut(s)	1807
PspGI	CCWGG	4 cut(s)	414, 543, 633, 774
PspN4I	GGNNCC	7 cut(s)	359, 435, 725, 1047, 1220, 1626, 1806
PspPI	GGNCC	5 cut(s)	180, 280, 747, 1534, 1804
PspPPI	RGGWCCY	1 cut(s)	1804
PstNI	CAGNNNCTG	1 cut(s)	1814
PsuI	RGATCY	3 cut(s)	433, 1218, 1375
PvuI	CGATCG	1 cut(s)	1385
PvuII	CAGCTG	2 cut(s)	1205, 1811
RsaI	GTAC	4 cut(s)	781, 919, 935, 1520
RsaNI	GTAC	4 cut(s)	780, 918, 934, 1519
RseI	CAYNNNNRTG	1 cut(s)	1434
SacI	GAGCTC	1 cut(s)	1311
SapI	GCTCTTC	1 cut(s)	1310
SaqAI	TTAA	3 cut(s)	81, 624, 1038
SatI	GCNGC	8 cut(s)	611, 693, 1044, 1203, 1605, 1725, 1812, 1888
Sau3AI	GATC	6 cut(s)	433, 1218, 1333, 1375, 1382, 1632
Sau96I	GGNCC	5 cut(s)	180, 280, 747, 1534, 1804
SchI	GAGTC	2 cut(s)	797, 1593
ScrFI	CCNGG	4 cut(s)	416, 545, 635, 776
SduI	GDGCHC	4 cut(s)	634, 1311, 1342, 1900
SfaNI	GCATC	7 cut(s)	34, 883, 1021, 1045, 1370, 1378, 1515
SfcI	CTRYAG	2 cut(s)	654, 1489
Sfr274I	CTCGAG	1 cut(s)	1310
SfuI	TTCGAA	1 cut(s)	1462
SinI	GGWCC	5 cut(s)	180, 280, 747, 1534, 1804
SlaI	CTCGAG	1 cut(s)	1310
SmiMI	CAYNNNNRTG	1 cut(s)	1434
SmlI	CTYRAG	5 cut(s)	209, 736, 1310, 1610, 1901
SmoI	CTYRAG	5 cut(s)	209, 736, 1310, 1610, 1901
SsiI	CCGC	6 cut(s)	610, 938, 1043, 1117, 1866, 1888
SspI	AATATT	1 cut(s)	927
SspMI	CTAG	4 cut(s)	273, 576, 785, 1109
SstI	GAGCTC	1 cut(s)	1311
StyD4I	CCNGG	4 cut(s)	414, 543, 633, 774
StyI	CCWWGG	2 cut(s)	226, 1891
TaaI	ACNGT	4 cut(s)	10, 19, 430, 562
TaiI	ACGT	3 cut(s)	467, 1012, 1448
TaqI	TCGA	4 cut(s)	42, 1005, 1311, 1462
TatI	WGTACW	1 cut(s)	1518
TauI	GCSGC	3 cut(s)	613, 1046, 1890
TfiI	GAWTC	7 cut(s)	385, 703, 1256, 1464, 1694, 1763, 1847
Tru1I	TTAA	3 cut(s)	81, 624, 1038
Tru9I	TTAA	3 cut(s)	81, 624, 1038
TscAI	CASTG	5 cut(s)	37, 435, 453, 567, 807
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	5 cut(s)	692, 1202, 1604, 1724, 1811
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	8 cut(s)	507, 924, 1139, 1152, 1179, 1197, 1452, 1611
TspGWI	ACGGA	1 cut(s)	1486
TspRI	CASTG	5 cut(s)	37, 435, 453, 567, 807
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	5 cut(s)	180, 280, 747, 1534, 1804
XapI	RAATTY	3 cut(s)	619, 974, 1394
XceI	RCATGY	2 cut(s)	944, 1180
XhoI	CTCGAG	1 cut(s)	1310
XmiI	GTMKAC	2 cut(s)	189, 791
XmnI	GAANNNNTTC	2 cut(s)	1458, 1846
XspI	CTAG	4 cut(s)	273, 576, 785, 1109
Zsp2I	ATGCAT	2 cut(s)	862, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.