Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002389.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

18952 .. 21699

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002389.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

atgctgcatatgcatggctatctctcaagaactctatccctcccaagacgacctcctctacgaagaagagcttctccgaaacccttacagccacaagctctgtggcgctaccttatcgcccgatctgacgcgcccttcaagaagcgccgcaccatctacgagcgcgccctcaaggcccttcccggaagctacaagctttggtacgcctacctccgcgagcgtctagagctcgtccgcaactttccgatcaaccactccgagtacgaaaccctaaacaacaccttcgagagggcgttggtgacaatgcataagatgccgcggatttggattctgtatttacagagcctgacggagcagagattggtcacgaggactcgccggagtttcgatcgggcgctgtgtgctctgccggtgcagcagcacgaccggatttgggagctgtatttggtgttcgtgagccagaaggggatccctatccagacatcgcttcgggtctaccggaggtacttgctttatgacccgactcatgttgaggactttattacgtttttgatagagtctgagctgcggcaagatgcggcggagaggctggcctcggtgcttaatgatgatcagtttaggtcgattaagggaaagactaagcataggttgtggttggagttgtgtgattcgcttactaagaatgccacggcggtttcggggttgaatgtggatgctatcattagaggtgggattaagaagtttacggatgaggtgggaaggctgtggacgtcgttgccggattattatattaagaggggtttgtttgagaaggctagggatgtgtttgaggaggggatgcagactgtggtgactgtgagggattttagtgtgattttcgatgcgtatgcgcagtttgaagagagtatgcttgcgattaagatggaggctttggggagtgatgaggaggaggagaaaggagagaatgggagaatgttggctcgattggaccatcttatggatagaagacctgaactggctaatagtgttcttttgagacaaaatccgcataatgtagagcaatggcaccggagagtgaagctgtttgaggggaatcctacaaagcagatacttacttacacacaggctgtgaagacagtggatccaatgcaagcagtggggaagcctcatacgttgtgggttgcttttgctaagctgtatgaaatacatggagatattgcaaatgcaagagtaatttttgataaggccgtccaggtgaactacaagacagtggataatctggctagtctgtggtgtgagtgggcagaaatggaattgcggcataagaattttacacgcgccctggaactgatgagaagagctacagcagagccgtctgttgaggttaaacgaagagttgctgctgatgggaatccaccagttcagatgaggctccataaatccttgaggctttggaccttttatgtggacttggaggagagcctgggtacactagagtctactcgggcagtgtatgagaggatattggatttgagaatagccacacctcaaataataatcaactatgcattgcttctggaagaacataaatactttgaagatgcatttaaagtctatgaaaagggtactcaaatattcaagtacccgcatgtcaaagacatatggattatttatctctctaaatttgtaaaaagatatgggaagaataagctggaacgtgcaagactgctctttgaggatgctgttaaagcggctcctgcagatgcgaagaaatcattgtatcttcaatttgcaaagttggaggaggattatggtctagcaaagcgggctatgaaggtctatgatgaagcaactaaggctgttccaaaccatgaaaagttgagcatgtatgaaatctacattgcacgtgcagctgagatatttggggtccccaaaacaagggagatatatgagcaagcaatagaatctggactccctgacaaagatgtgaagacaatgtgtctaaagtatgctaagcccgagaagagcttgggcgaaattgatcgtgctcggggagtttacgtatttgcatctcagttttcagatccacgatcggatgcagaattctggaacaaatggcacgagtttgaggagcaacacgggaatgaagatacgtttagagaaatgtttcgaatcaaacggagtatttctgcaagttatagccagacacactttattctacccaagtatatgatgcaaaaggatcagaggttgagcattgacgaggcaaaagacaaattgaaacaggctggagtccccgaacatgaaatggctgctcttgagaggcagtgggctcctgcgatcagcgatacaccctctaaagacagcaacagaaaagtgggctttgtgagtgctggaatagaatcacagattgatggagggataaaagttgctgcaaatcacgaagacattgaactaccagaagaaagtgattctgaagatgaggcaaatgttgaaatagcacaaaaggaggtcccagctgctgtttttggagatttggctaacaaaagaaaggattctgaagataatgagggcgcagaccttggtgctcttgagagaataaagaggctgaaaaaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

873

Amino Acids

101.53

Weight (kDa)

8.83

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	773
Acc16I	TGCGCA	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	1065
AccB7I	CCANNNNNTGG	1 cut(s)	997
AccI	GTMKAC	2 cut(s)	495, 1499
AccII	CGCG	5 cut(s)	131, 165, 216, 319, 1338
AclWI	GGATC	6 cut(s)	463, 476, 1136, 1149, 2078, 2250
AcsI	RAATTY	3 cut(s)	1327, 1682, 2102
AcuI	CTGAAG	2 cut(s)	2496, 2580
AcvI	CACGTG	1 cut(s)	1907
AcyI	GRCGYC	1 cut(s)	770
AfaI	GTAC	6 cut(s)	203, 263, 506, 1489, 1627, 1643
AfiI	CCNNNNNNNGG	4 cut(s)	288, 433, 997, 1938
AgsI	TTSAA	9 cut(s)	139, 706, 899, 1598, 1639, 1787, 2281, 2453, 2495
AhdI	GACNNNNNGTC	1 cut(s)	1998
AjnI	CCWGG	3 cut(s)	1251, 1341, 1482
Alw21I	GWGCWC	4 cut(s)	231, 406, 2050, 2590
Alw26I	GTCTC	1 cut(s)	1030
AlwI	GGATC	6 cut(s)	463, 476, 1136, 1149, 2078, 2250
AlwNI	CAGNNNCTG	2 cut(s)	346, 2522
Ama87I	CYCGRG	3 cut(s)	1503, 2018, 2049
AoxI	GGCC	3 cut(s)	174, 591, 1245
ApeKI	GCWGC	9 cut(s)	4, 415, 418, 565, 1400, 1910, 2312, 2432, 2519
ApoI	RAATTY	3 cut(s)	1327, 1682, 2102
Asp700I	GAANNNNTTC	3 cut(s)	70, 2166, 2554
AspLEI	GCGC	9 cut(s)	108, 133, 147, 165, 167, 397, 892, 1340, 2576
AspS9I	GGNCC	5 cut(s)	175, 988, 1455, 1927, 2512
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	310, 862, 1267
AsuII	TTCGAA	1 cut(s)	2170
AvaI	CYCGRG	3 cut(s)	1503, 2018, 2049
AvaII	GGWCC	4 cut(s)	988, 1455, 1927, 2512
BamHI	GGATCC	2 cut(s)	468, 1141
BanI	GGYRCC	1 cut(s)	1065
BanII	GRGCYC	2 cut(s)	231, 2335
BauI	CACGAG	2 cut(s)	367, 2120
BbrPI	CACGTG	1 cut(s)	1907
BbsI	GAAGAC	4 cut(s)	1012, 1139, 1997, 2451
Bbv12I	GWGCWC	4 cut(s)	231, 406, 2050, 2590
BbvI	GCAGC	8 cut(s)	427, 430, 552, 1387, 1922, 2299, 2419, 2506
BccI	CCATC	5 cut(s)	161, 916, 999, 1400, 2408
BceAI	ACGGC	3 cut(s)	705, 1232, 1357
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciT130I	CCWGG	3 cut(s)	1253, 1343, 1484
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	1030
BfaI	CTAG	5 cut(s)	224, 816, 1284, 1493, 1817
BfmI	CTRYAG	2 cut(s)	1362, 1758
BfoI	RGCGCY	3 cut(s)	109, 148, 398
BglI	GCCNNNNNGGC	1 cut(s)	173
BlpI	GCTNAGC	2 cut(s)	1191, 2013
Bme1390I	CCNGG	4 cut(s)	183, 1253, 1343, 1484
Bme18I	GGWCC	4 cut(s)	988, 1455, 1927, 2512
BmeRI	GACNNNNNGTC	1 cut(s)	1998
BmeT110I	CYCGRG	3 cut(s)	1503, 2018, 2049
BmgT120I	GGNCC	5 cut(s)	175, 988, 1455, 1927, 2512
BmiI	GGNNCC	9 cut(s)	470, 1067, 1143, 1433, 1755, 1928, 1929, 2334, 2514
BmrFI	CCNGG	4 cut(s)	183, 1253, 1343, 1484
BpiI	GAAGAC	4 cut(s)	1012, 1139, 1997, 2451
BpmI	CTGGAG	1 cut(s)	2310
Bpu1102I	GCTNAGC	2 cut(s)	1191, 2013
Bpu14I	TTCGAA	1 cut(s)	2170
BpuEI	CTTGAG	5 cut(s)	10, 155, 1465, 2339, 2612
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	2 cut(s)	1907, 2062
BsaBI	GATNNNNATC	2 cut(s)	473, 1410
BsaHI	GRCGYC	1 cut(s)	770
BsaJI	CCNNGG	6 cut(s)	317, 594, 687, 1341, 1483, 2581
BsaWI	WCCGGW	3 cut(s)	426, 498, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	2046, 2076
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 433, 997, 1938
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	1020, 1418
Bse3DI	GCAATG	3 cut(s)	1067, 1568, 1899
Bse8I	GATNNNNATC	2 cut(s)	473, 1410
BseBI	CCWGG	3 cut(s)	1253, 1343, 1484
BseDI	CCNNGG	6 cut(s)	317, 594, 687, 1341, 1483, 2581
BseGI	GGATG	6 cut(s)	718, 754, 826, 843, 1744, 2101
BseJI	GATNNNNATC	2 cut(s)	473, 1410
BseLI	CCNNNNNNNGG	4 cut(s)	288, 433, 997, 1938
BseMI	GCAATG	3 cut(s)	1067, 1568, 1899
BseMII	CTCAG	3 cut(s)	552, 1905, 2087
BseNI	ACTGG	2 cut(s)	1020, 1418
BsePI	GCGCGC	1 cut(s)	163
BseRI	GAGGAG	8 cut(s)	45, 845, 959, 962, 965, 1490, 1817, 2144
BseXI	GCAGC	8 cut(s)	427, 430, 552, 1387, 1922, 2299, 2419, 2506
BseYI	CCCAGC	1 cut(s)	2515
BsgI	GTGCAG	2 cut(s)	434, 1929
Bsh1236I	CGCG	5 cut(s)	131, 165, 216, 319, 1338
Bsh1285I	CGRYCG	3 cut(s)	391, 427, 2093
BshFI	GGCC	3 cut(s)	176, 593, 1247
BshNI	GGYRCC	1 cut(s)	1065
BsiEI	CGRYCG	3 cut(s)	391, 427, 2093
BsiHKAI	GWGCWC	4 cut(s)	231, 406, 2050, 2590
BsiHKCI	CYCGRG	3 cut(s)	1503, 2018, 2049
BsiSI	CCGG	7 cut(s)	183, 379, 410, 427, 499, 779, 1069
BslFI	GGGAC	3 cut(s)	1913, 2279, 2498
BslI	CCNNNNNNNGG	4 cut(s)	288, 433, 997, 1938
BsmAI	GTCTC	1 cut(s)	1030
BsmFI	GGGAC	3 cut(s)	1913, 2279, 2498
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	176, 593, 1247
BsoBI	CYCGRG	3 cut(s)	1503, 2018, 2049
Bsp119I	TTCGAA	1 cut(s)	2170
Bsp1286I	GDGCHC	5 cut(s)	231, 406, 2050, 2335, 2590
Bsp1720I	GCTNAGC	2 cut(s)	1191, 2013
BspANI	GGCC	3 cut(s)	176, 593, 1247
BspCNI	CTCAG	3 cut(s)	553, 1906, 2086
BspFNI	CGCG	5 cut(s)	131, 165, 216, 319, 1338
BspLI	GGNNCC	9 cut(s)	470, 1067, 1143, 1433, 1755, 1928, 1929, 2334, 2514
BspMAI	CTGCAG	1 cut(s)	1762
BspPI	GGATC	6 cut(s)	463, 476, 1136, 1149, 2078, 2250
BspQI	GCTCTTC	3 cut(s)	61, 1351, 2018
BspT104I	TTCGAA	1 cut(s)	2170
BspT107I	GGYRCC	1 cut(s)	1065
BsrDI	GCAATG	3 cut(s)	1067, 1568, 1899
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	1020, 1418
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	6 cut(s)	317, 594, 687, 1341, 1483, 2581
BssHII	GCGCGC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	770
BssSI	CACGAG	2 cut(s)	367, 2120
BssT1I	CCWWGG	1 cut(s)	2581
Bst2BI	CACGAG	2 cut(s)	367, 2120
Bst2UI	CCWGG	3 cut(s)	1253, 1343, 1484
Bst4CI	ACNGT	4 cut(s)	847, 856, 1138, 1270
Bst6I	CTCTTC	5 cut(s)	61, 894, 1351, 1387, 2018
BstACI	GRCGYC	1 cut(s)	770
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstBAI	YACGTR	2 cut(s)	1907, 2062
BstBI	TTCGAA	1 cut(s)	2170
BstC8I	GCNNGC	7 cut(s)	165, 218, 591, 912, 1152, 1827, 1956
BstDEI	CTNAG	8 cut(s)	561, 639, 678, 1191, 1854, 1914, 2013, 2073
BstDSI	CCRYGG	2 cut(s)	317, 687
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	6 cut(s)	718, 754, 826, 843, 1744, 2101
BstFNI	CGCG	5 cut(s)	131, 165, 216, 319, 1338
BstH2I	RGCGCY	3 cut(s)	109, 148, 398
BstHHI	GCGC	9 cut(s)	108, 133, 147, 165, 167, 397, 892, 1340, 2576
BstMAI	GTCTC	1 cut(s)	1030
BstMCI	CGRYCG	3 cut(s)	391, 427, 2093
BstNI	CCWGG	3 cut(s)	1253, 1343, 1484
BstNSI	RCATGY	2 cut(s)	1652, 1888
BstSCI	CCNGG	4 cut(s)	181, 1251, 1341, 1482
BstSFI	CTRYAG	2 cut(s)	1362, 1758
BstSNI	TACGTA	1 cut(s)	2062
BstUI	CGCG	5 cut(s)	131, 165, 216, 319, 1338
BstV1I	GCAGC	8 cut(s)	427, 430, 552, 1387, 1922, 2299, 2419, 2506
BstV2I	GAAGAC	4 cut(s)	1012, 1139, 1997, 2451
BstX2I	RGATCY	3 cut(s)	468, 1141, 2083
BstYI	RGATCY	3 cut(s)	468, 1141, 2083
BsuRI	GGCC	3 cut(s)	176, 593, 1247
BtgI	CCRYGG	2 cut(s)	317, 687
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	6 cut(s)	718, 754, 826, 843, 1744, 2101
BtsI	GCAGTG	3 cut(s)	1161, 1515, 2333
BtsIMutI	CAGTG	5 cut(s)	1143, 1161, 1275, 1515, 2333
Cac8I	GCNNGC	7 cut(s)	165, 218, 591, 912, 1152, 1827, 1956
CaiI	CAGNNNCTG	2 cut(s)	346, 2522
CfoI	GCGC	9 cut(s)	108, 133, 147, 165, 167, 397, 892, 1340, 2576
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	5 cut(s)	175, 988, 1455, 1927, 2512
Cfr42I	CCGCGG	1 cut(s)	320
CseI	GACGC	2 cut(s)	137, 209
Csp6I	GTAC	6 cut(s)	202, 262, 505, 1488, 1626, 1642
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	7 cut(s)	14, 527, 1208, 1649, 1871, 1885, 2303
CviQI	GTAC	6 cut(s)	202, 262, 505, 1488, 1626, 1642
DdeI	CTNAG	8 cut(s)	561, 639, 678, 1191, 1854, 1914, 2013, 2073
DraI	TTTAAA	1 cut(s)	1609
DriI	GACNNNNNGTC	1 cut(s)	1998
Eam1104I	CTCTTC	5 cut(s)	61, 894, 1351, 1387, 2018
Eam1105I	GACNNNNNGTC	1 cut(s)	1998
EarI	CTCTTC	5 cut(s)	61, 894, 1351, 1387, 2018
EciI	GGCGGA	1 cut(s)	596
Ecl136II	GAGCTC	1 cut(s)	229
Eco105I	TACGTA	1 cut(s)	2062
Eco130I	CCWWGG	1 cut(s)	2581
Eco24I	GRGCYC	2 cut(s)	231, 2335
Eco47I	GGWCC	4 cut(s)	988, 1455, 1927, 2512
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	2496, 2580
Eco72I	CACGTG	1 cut(s)	1907
Eco88I	CYCGRG	3 cut(s)	1503, 2018, 2049
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoO109I	RGGNCCY	3 cut(s)	175, 1927, 2512
EcoRI	GAATTC	1 cut(s)	2102
EcoRII	CCWGG	3 cut(s)	1251, 1341, 1482
EcoT14I	CCWWGG	1 cut(s)	2581
EcoT22I	ATGCAT	4 cut(s)	15, 309, 1570, 1606
EcoT38I	GRGCYC	2 cut(s)	231, 2335
ErhI	CCWWGG	1 cut(s)	2581
FaeI	CATG	7 cut(s)	17, 530, 1211, 1652, 1874, 1888, 2306
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	3 cut(s)	1913, 2279, 2498
FatI	CATG	7 cut(s)	13, 526, 1207, 1648, 1870, 1884, 2302
FauI	CCCGC	2 cut(s)	1653, 1818
FauNDI	CATATG	2 cut(s)	9, 1661
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	2 cut(s)	495, 1499
FokI	GGATG	6 cut(s)	725, 761, 833, 850, 1751, 2108
FriOI	GRGCYC	2 cut(s)	231, 2335
FspBI	CTAG	5 cut(s)	224, 816, 1284, 1493, 1817
FspI	TGCGCA	1 cut(s)	891
GlaI	GCGC	9 cut(s)	107, 132, 146, 164, 166, 396, 891, 1339, 2575
GsaI	CCCAGC	1 cut(s)	2519
GsuI	CTGGAG	1 cut(s)	2310
HaeII	RGCGCY	3 cut(s)	109, 148, 398
HaeIII	GGCC	3 cut(s)	176, 593, 1247
HapII	CCGG	7 cut(s)	183, 379, 410, 427, 499, 779, 1069
HgaI	GACGC	2 cut(s)	137, 209
HhaI	GCGC	9 cut(s)	108, 133, 147, 165, 167, 397, 892, 1340, 2576
Hin1I	GRCGYC	1 cut(s)	770
Hin1II	CATG	7 cut(s)	17, 530, 1211, 1652, 1874, 1888, 2306
Hin6I	GCGC	9 cut(s)	106, 131, 145, 163, 165, 395, 890, 1338, 2574
HinP1I	GCGC	9 cut(s)	106, 131, 145, 163, 165, 395, 890, 1338, 2574
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	7 cut(s)	183, 379, 410, 427, 499, 779, 1069
HphI	GGTGA	3 cut(s)	310, 862, 1267
Hpy166II	GTNNAC	8 cut(s)	496, 744, 768, 1258, 1468, 1490, 1500, 2059
Hpy8I	GTNNAC	8 cut(s)	496, 744, 768, 1258, 1468, 1490, 1500, 2059
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	7 cut(s)	145, 188, 292, 457, 753, 805, 1828
HpyCH4III	ACNGT	4 cut(s)	847, 856, 1138, 1270
HpyCH4IV	ACGT	7 cut(s)	545, 770, 1172, 1717, 1906, 2061, 2153
HpyF3I	CTNAG	8 cut(s)	561, 639, 678, 1191, 1854, 1914, 2013, 2073
HpySE526I	ACGT	7 cut(s)	545, 770, 1172, 1717, 1906, 2061, 2153
Hsp92I	GRCGYC	1 cut(s)	770
Hsp92II	CATG	7 cut(s)	17, 530, 1211, 1652, 1874, 1888, 2306
HspAI	GCGC	9 cut(s)	106, 131, 145, 163, 165, 395, 890, 1338, 2574
KflI	GGGWCCC	1 cut(s)	1927
Ksp22I	TGATCA	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	320
LguI	GCTCTTC	3 cut(s)	61, 1351, 2018
LmnI	GCTCC	6 cut(s)	352, 436, 1437, 1759, 2131, 2338
Lsp1109I	GCAGC	8 cut(s)	427, 430, 552, 1387, 1922, 2299, 2419, 2506
MaeI	CTAG	5 cut(s)	224, 816, 1284, 1493, 1817
MaeII	ACGT	7 cut(s)	545, 770, 1172, 1717, 1906, 2061, 2153
MaeIII	GTNAC	3 cut(s)	298, 364, 850
MflI	RGATCY	3 cut(s)	468, 1141, 2083
MhlI	GDGCHC	5 cut(s)	231, 406, 2050, 2335, 2590
MluCI	AATT	8 cut(s)	1233, 1313, 1327, 1682, 1787, 2037, 2102, 2276
MlyI	GAGTC	6 cut(s)	367, 517, 566, 1505, 1965, 2301
MmeI	TCCRAC	2 cut(s)	636, 1779
Mph1103I	ATGCAT	4 cut(s)	15, 309, 1570, 1606
MroXI	GAANNNNTTC	3 cut(s)	70, 2166, 2554
MseI	TTAA	8 cut(s)	603, 627, 735, 792, 918, 1386, 1608, 1746
MslI	CAYNNNNRTG	2 cut(s)	12, 2142
MspA1I	CMGCKG	3 cut(s)	319, 1913, 2519
MspI	CCGG	7 cut(s)	183, 379, 410, 427, 499, 779, 1069
MspR9I	CCNGG	4 cut(s)	183, 1253, 1343, 1484
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	1253, 1343, 1484
MvnI	CGCG	5 cut(s)	131, 165, 216, 319, 1338
NciI	CCSGG	1 cut(s)	183
NdeI	CATATG	2 cut(s)	9, 1661
NlaIII	CATG	7 cut(s)	17, 530, 1211, 1652, 1874, 1888, 2306
NlaIV	GGNNCC	9 cut(s)	470, 1067, 1143, 1433, 1755, 1928, 1929, 2334, 2514
NmuCI	GTSAC	3 cut(s)	298, 364, 850
NsbI	TGCGCA	1 cut(s)	891
NsiI	ATGCAT	4 cut(s)	15, 309, 1570, 1606
NspI	RCATGY	2 cut(s)	1652, 1888
NspV	TTCGAA	1 cut(s)	2170
PauI	GCGCGC	1 cut(s)	163
PciSI	GCTCTTC	3 cut(s)	61, 1351, 2018
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	3 cut(s)	70, 2166, 2554
PfeI	GAWTC	9 cut(s)	328, 668, 1093, 1411, 1964, 2172, 2402, 2471, 2555
PflMI	CCANNNNNTGG	1 cut(s)	997
PfoI	TCCNGGA	1 cut(s)	181
Ple19I	CGATCG	2 cut(s)	391, 2093
PleI	GAGTC	6 cut(s)	367, 517, 565, 1504, 1965, 2300
PmaCI	CACGTG	1 cut(s)	1907
PmlI	CACGTG	1 cut(s)	1907
PpsI	GAGTC	6 cut(s)	367, 517, 565, 1504, 1965, 2300
Ppu21I	YACGTR	2 cut(s)	1907, 2062
PpuMI	RGGWCCY	2 cut(s)	1927, 2512
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	2 cut(s)	1927, 2512
Psp6I	CCWGG	3 cut(s)	1251, 1341, 1482
PspCI	CACGTG	1 cut(s)	1907
PspFI	CCCAGC	1 cut(s)	2515
PspGI	CCWGG	3 cut(s)	1251, 1341, 1482
PspN4I	GGNNCC	9 cut(s)	470, 1067, 1143, 1433, 1755, 1928, 1929, 2334, 2514
PspPI	GGNCC	5 cut(s)	175, 988, 1455, 1927, 2512
PspPPI	RGGWCCY	2 cut(s)	1927, 2512
PsrI	GAACNNNNNNTAC	2 cut(s)	434, 466
PstI	CTGCAG	1 cut(s)	1762
PstNI	CAGNNNCTG	2 cut(s)	346, 2522
PsuI	RGATCY	3 cut(s)	468, 1141, 2083
PteI	GCGCGC	1 cut(s)	163
PvuI	CGATCG	2 cut(s)	391, 2093
PvuII	CAGCTG	2 cut(s)	1913, 2519
RsaI	GTAC	6 cut(s)	203, 263, 506, 1489, 1627, 1643
RsaNI	GTAC	6 cut(s)	202, 262, 505, 1488, 1626, 1642
RseI	CAYNNNNRTG	2 cut(s)	12, 2142
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	320
SapI	GCTCTTC	3 cut(s)	61, 1351, 2018
SaqAI	TTAA	8 cut(s)	603, 627, 735, 792, 918, 1386, 1608, 1746
Sau96I	GGNCC	5 cut(s)	175, 988, 1455, 1927, 2512
SchI	GAGTC	6 cut(s)	367, 517, 566, 1505, 1965, 2301
ScrFI	CCNGG	4 cut(s)	183, 1253, 1343, 1484
SduI	GDGCHC	5 cut(s)	231, 406, 2050, 2335, 2590
SfcI	CTRYAG	2 cut(s)	1362, 1758
Sfr303I	CCGCGG	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	2170
SgrBI	CCGCGG	1 cut(s)	320
SinI	GGWCC	4 cut(s)	988, 1455, 1927, 2512
SmiMI	CAYNNNNRTG	2 cut(s)	12, 2142
SmlI	CTYRAG	5 cut(s)	25, 170, 1444, 2318, 2591
SmoI	CTYRAG	5 cut(s)	25, 170, 1444, 2318, 2591
SnaBI	TACGTA	1 cut(s)	2062
Sse9I	AATT	8 cut(s)	1233, 1313, 1327, 1682, 1787, 2037, 2102, 2276
SspI	AATATT	1 cut(s)	1635
SspMI	CTAG	5 cut(s)	224, 816, 1284, 1493, 1817
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	181, 1251, 1341, 1482
StyI	CCWWGG	1 cut(s)	2581
TaaI	ACNGT	4 cut(s)	847, 856, 1138, 1270
TaiI	ACGT	7 cut(s)	548, 773, 1175, 1720, 1909, 2064, 2156
TaqI	TCGA	6 cut(s)	285, 387, 623, 879, 982, 2170
TasI	AATT	8 cut(s)	1233, 1313, 1327, 1682, 1787, 2037, 2102, 2276
TauI	GCSGC	6 cut(s)	150, 319, 571, 581, 1321, 1754
TfiI	GAWTC	9 cut(s)	328, 668, 1093, 1411, 1964, 2172, 2402, 2471, 2555
Tru1I	TTAA	8 cut(s)	603, 627, 735, 792, 918, 1386, 1608, 1746
Tru9I	TTAA	8 cut(s)	603, 627, 735, 792, 918, 1386, 1608, 1746
TscAI	CASTG	5 cut(s)	1143, 1161, 1275, 1515, 2333
TseFI	GTSAC	3 cut(s)	298, 364, 850
TseI	GCWGC	9 cut(s)	4, 415, 418, 565, 1400, 1910, 2312, 2432, 2519
Tsp45I	GTSAC	3 cut(s)	298, 364, 850
TspDTI	ATGAA	8 cut(s)	1215, 1632, 1847, 1860, 1887, 1905, 2160, 2319
TspGWI	ACGGA	3 cut(s)	365, 761, 2194
TspRI	CASTG	5 cut(s)	1143, 1161, 1275, 1515, 2333
Van91I	CCANNNNNTGG	1 cut(s)	997
VpaK11BI	GGWCC	4 cut(s)	988, 1455, 1927, 2512
XagI	CCTNNNNNAGG	1 cut(s)	286
XapI	RAATTY	3 cut(s)	1327, 1682, 2102
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	2 cut(s)	1652, 1888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmiI	GTMKAC	2 cut(s)	495, 1499
XmnI	GAANNNNTTC	3 cut(s)	70, 2166, 2554
XspI	CTAG	5 cut(s)	224, 816, 1284, 1493, 1817
ZraI	GACGTC	1 cut(s)	771
Zsp2I	ATGCAT	4 cut(s)	15, 309, 1570, 1606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.