Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304153.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

160 .. 754

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304153.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgaaatctatatcgcccgcgcagcggagaggctgcttggtgtccccaagacaaggaaagatatatgtgcaaacaatagaatctggtcttccacacaaggatgttaagacaatgtgtttgaagtatgccgagctagagaagagcttggctgaaattgatcgtgctcggagagtatatgtatatggatcacagttttcacatccacaatatgatgcggatttctggaacaaatggctcgagtttgaggtgcaatacggcaatgaggatacttgccgagatatgcttcgaatcaaacggagttcagtgctagttgtcatgaagacatgcattgaactagcggaagaagaaactgatttcgaagatgagaagatggttgaggttgcaccaaaggaggtcccgttggctgtttttggacatttcgctaacaagcctgaagatgattctccccagagccgctttggtgcacttgagaggatacagaggcgaagactagcagtagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

167

Amino Acids

19.38

Weight (kDa)

6.34

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	5 cut(s)	18, 25, 215, 338, 454
AclWI	GGATC	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	24, 53
AgsI	TTSAA	2 cut(s)	121, 332
AluBI	AGCT	2 cut(s)	133, 144
AluI	AGCT	2 cut(s)	133, 144
Alw21I	GWGCWC	2 cut(s)	166, 466
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	22, 33
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	394
AsuII	TTCGAA	2 cut(s)	286, 357
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	466
BbsI	GAAGAC	3 cut(s)	80, 326, 493
Bbv12I	GWGCWC	2 cut(s)	166, 466
BbvI	GCAGC	2 cut(s)	20, 34
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	2 cut(s)	259, 468
BfaI	CTAG	4 cut(s)	134, 308, 335, 491
BfuI	GTATCC	2 cut(s)	259, 468
BisI	GCNGC	3 cut(s)	23, 34, 454
BlsI	GCNGC	3 cut(s)	24, 35, 455
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	396
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	3 cut(s)	80, 326, 493
Bpu14I	TTCGAA	2 cut(s)	286, 357
BpuEI	CTTGAG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 53
Bse3DI	GCAATG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	106, 199
BseLI	CCNNNNNNNGG	2 cut(s)	24, 53
BseMI	GCAATG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	20, 34
Bsh1236I	CGCG	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	166, 466
BsiHKCI	CYCGRG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	28, 380
BslI	CCNNNNNNNGG	2 cut(s)	24, 53
BsmFI	GGGAC	2 cut(s)	28, 380
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	2 cut(s)	286, 357
Bsp1286I	GDGCHC	2 cut(s)	166, 466
Bsp143I	GATC	2 cut(s)	157, 185
BspACI	CCGC	5 cut(s)	18, 25, 215, 338, 454
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	134
BspT104I	TTCGAA	2 cut(s)	286, 357
BsrDI	GCAATG	1 cut(s)	265
BssMI	GATC	2 cut(s)	157, 185
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	2 cut(s)	286, 357
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	106, 199
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	160, 188
BstMBI	GATC	2 cut(s)	157, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	20, 34
BstV2I	GAAGAC	3 cut(s)	80, 326, 493
BsuI	GTATCC	2 cut(s)	259, 468
BtsCI	GGATG	2 cut(s)	106, 199
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	394
CviAII	CATG	2 cut(s)	316, 324
CviJI	RGCY	8 cut(s)	33, 133, 144, 149, 235, 404, 430, 453
CviKI_1	RGCY	8 cut(s)	33, 133, 144, 149, 235, 404, 430, 453
DpnI	GATC	2 cut(s)	159, 187
DpnII	GATC	2 cut(s)	157, 185
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	329
FaeI	CATG	2 cut(s)	319, 327
FaqI	GGGAC	2 cut(s)	28, 380
FatI	CATG	2 cut(s)	315, 323
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	23, 34, 454
FokI	GGATG	2 cut(s)	113, 186
Fsp4HI	GCNGC	3 cut(s)	23, 34, 454
FspBI	CTAG	4 cut(s)	134, 308, 335, 491
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	23, 34, 454
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	319, 327
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	3 cut(s)	80, 288, 440
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	2 cut(s)	168, 503
Hpy188III	TCNNGA	2 cut(s)	223, 316
Hpy8I	GTNNAC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	5 cut(s)	70, 250, 327, 383, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	319, 327
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	157, 185
LguI	GCTCTTC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	69, 208, 444, 461
Lsp1109I	GCAGC	2 cut(s)	20, 34
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	4 cut(s)	134, 308, 335, 491
MalI	GATC	2 cut(s)	159, 187
MboI	GATC	2 cut(s)	157, 185
MboII	GAAGA	9 cut(s)	80, 151, 331, 353, 356, 371, 379, 446, 498
MhlI	GDGCHC	2 cut(s)	166, 466
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	7 cut(s)	23, 238, 256, 370, 385, 465, 474
Mph1103I	ATGCAT	1 cut(s)	329
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	2 cut(s)	157, 185
NlaIII	CATG	2 cut(s)	319, 327
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	2 cut(s)	154, 299
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	327
NspV	TTCGAA	2 cut(s)	286, 357
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	80, 288, 440
PkrI	GCNGC	3 cut(s)	24, 35, 455
PpuMI	RGGWCCY	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	394
PspPPI	RGGWCCY	1 cut(s)	394
PspXI	VCTCGAGB	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	23, 34, 454
Sau3AI	GATC	2 cut(s)	157, 185
Sau96I	GGNCC	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	166, 466
SetI	ASST	5 cut(s)	135, 146, 249, 381, 396
SfaNI	GCATC	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	236
SfuI	TTCGAA	2 cut(s)	286, 357
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	236, 467
SmoI	CTYRAG	2 cut(s)	236, 467
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	5 cut(s)	18, 25, 215, 338, 454
SspMI	CTAG	4 cut(s)	134, 308, 335, 491
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	237, 286, 357
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	80, 288, 440
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	22, 33
TspDTI	ATGAA	2 cut(s)	17, 332
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XhoI	CTCGAG	1 cut(s)	236
XspI	CTAG	4 cut(s)	134, 308, 335, 491
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.