Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

3866847 .. 3867342

Gene Structure 496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTAAACTCCCCAAGTCCTCGAGACTCTGGACTTTATATGTGGACTTGGATGAGAGTTTTGGTACATTAGGGTCCTCTCGGGCAGTGTACGAGAGAATATTGGATCTTAGAATAGCCACAACACAAATCATAATCAACTATGCATCCCTTCTGGAAGAGCATAAGTATTTTGAAGATGCATTCAAAGTGAATGAAAAGGGCACCCAAATCCAAATGTTCAAATATGGGGGGACACAAATGGAACGCGCAAGAGCGCTATTCGAGGACGCCGTTAAAGTGGCTCCTTCTGACGCAATTAAACCTTTGTATCTTCAGTTTGCAAAGCTGGAGGAGGATTATGGTCTAGCAAAGCGCGCTATGAATGTCTATCATGAAGCAATTGAGGCTGTTCCGAAACACGACAAGTTGAGCTTGTATGAATCTATATCGCCCGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

146

Amino Acids

16.71

Weight (kDa)

5.94

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_C	PF23231	3 - 141	2.8e-52	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	3 cut(s)	249, 357, 437
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	67, 92
AfeI	AGCGCT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	176, 187, 223
AluBI	AGCT	2 cut(s)	328, 414
AluI	AGCT	2 cut(s)	328, 414
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	2 cut(s)	22, 81
Aor51HI	AGCGCT	1 cut(s)	258
AspLEI	GCGC	4 cut(s)	251, 259, 357, 359
AspS9I	GGNCC	1 cut(s)	75
AvaI	CYCGRG	2 cut(s)	22, 81
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	293, 326
BanI	GGYRCC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	22, 81
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	76, 205, 285
BmsI	GCATC	2 cut(s)	155, 169
BpmI	CTGGAG	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	270
BseGI	GGATG	2 cut(s)	58, 146
BsePI	GCGCGC	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	206
Bsh1236I	CGCG	3 cut(s)	249, 357, 437
BshNI	GGYRCC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	22, 81
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	22, 81
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	435
BspFNI	CGCG	3 cut(s)	249, 357, 437
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	76, 205, 285
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	203
BssHII	GCGCGC	1 cut(s)	355
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	357, 435
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	58, 146
BstFNI	CGCG	3 cut(s)	249, 357, 437
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	4 cut(s)	251, 259, 357, 359
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 386
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	3 cut(s)	249, 357, 437
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	58, 146
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	357, 435
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	4 cut(s)	251, 259, 357, 359
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	2 cut(s)	278, 302
Csp6I	GTAC	2 cut(s)	66, 91
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	5 cut(s)	119, 284, 328, 389, 414
CviKI_1	RGCY	5 cut(s)	119, 284, 328, 389, 414
CviQI	GTAC	2 cut(s)	66, 91
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	75
Eco47III	AGCGCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	22, 81
EcoO109I	RGGNCCY	1 cut(s)	75
EcoT22I	ATGCAT	2 cut(s)	148, 184
FaeI	CATG	1 cut(s)	377
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	373
FokI	GGATG	2 cut(s)	65, 133
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	4 cut(s)	250, 258, 356, 358
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	260
HgaI	GACGC	2 cut(s)	278, 302
HhaI	GCGC	4 cut(s)	251, 259, 357, 359
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	4 cut(s)	249, 257, 355, 357
HinP1I	GCGC	4 cut(s)	249, 257, 355, 357
HinfI	GANTC	2 cut(s)	27, 422
Hpy166II	GTNNAC	2 cut(s)	46, 91
Hpy188I	TCNGA	2 cut(s)	292, 396
Hpy188III	TCNNGA	4 cut(s)	24, 31, 155, 374
Hpy8I	GTNNAC	2 cut(s)	46, 91
HpyAV	CCTTC	2 cut(s)	161, 297
HpyCH4V	TGCA	3 cut(s)	146, 182, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 386
HpyF3I	CTNAG	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	4 cut(s)	249, 257, 355, 357
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	3 cut(s)	16, 140, 314
LweI	GCATC	2 cut(s)	155, 169
MaeI	CTAG	1 cut(s)	347
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	170, 188, 305
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	2 cut(s)	297, 381
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	6 cut(s)	31, 88, 259, 325, 328, 379
Mph1103I	ATGCAT	2 cut(s)	148, 184
MseI	TTAA	3 cut(s)	6, 276, 300
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	182
MvnI	CGCG	3 cut(s)	249, 357, 437
MwoI	GCNNNNNNNGC	2 cut(s)	356, 386
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	3 cut(s)	76, 205, 285
NsiI	ATGCAT	2 cut(s)	148, 184
PaeR7I	CTCGAG	1 cut(s)	22
PagI	TCATGA	1 cut(s)	373
PauI	GCGCGC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	76, 205, 285
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	106
PteI	GCGCGC	1 cut(s)	355
RsaI	GTAC	2 cut(s)	67, 92
RsaNI	GTAC	2 cut(s)	66, 91
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	6, 276, 300
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	3 cut(s)	307, 330, 416
SfaNI	GCATC	2 cut(s)	155, 169
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	297, 381
SsiI	CCGC	1 cut(s)	435
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	347
TaqI	TCGA	2 cut(s)	23, 264
TasI	AATT	2 cut(s)	297, 381
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	6, 276, 300
Tru9I	TTAA	3 cut(s)	6, 276, 300
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	4 cut(s)	210, 377, 390, 435
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	2 cut(s)	148, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.