Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032392.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 465

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032392.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 464 bp

ctgtggcaagaggcggcggagcggctggcctcggtgcttaatgacgatcagtttaggtcaattaaggggaagacgaagcataggctgtggttggagttgtgtgatttgcttactaagaatgccacggctgtttcggggttgaatgtggatgctatcattagaggtgggattaagaagtttacggatgaggtggggaggctgtggacgtcgttggcggattattatattaagaggagtttgtttgagaaggctcgggatgtgtttgaggagggtatgcagactgtggtgactgtgagggatttcagtgtgattttcgatgcgtatgcgcagtttgaagagagtatgcttgcgattaagatggaggctttggggagtgatgaggacgacgaggaggaaggagagaatgggagaatggaagatgagagaagtgaagaggaggaggaagatgtccggaccaatgtaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

4.45

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
Acc16I	TGCGCA	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	450
AciI	CCGC	4 cut(s)	14, 17, 22, 215
AcyI	GRCGYC	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	142, 335
Ama87I	CYCGRG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	450
AoxI	GGCC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	77
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BisI	GCNGC	2 cut(s)	15, 23
BlsI	GCNGC	2 cut(s)	16, 24
Bme18I	GGWCC	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	453
BmsI	GCATC	2 cut(s)	139, 307
BpiI	GAAGAC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	30, 123
BsaWI	WCCGGW	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	30, 123
BseGI	GGATG	3 cut(s)	154, 190, 262
BseRI	GAGGAG	5 cut(s)	247, 281, 404, 449, 452
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	4 cut(s)	14, 17, 22, 215
BspANI	GGCC	1 cut(s)	29
BspEI	TCCGGA	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	30, 123
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	283, 292
Bst6I	CTCTTC	2 cut(s)	330, 426
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	27, 348
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	154, 190, 262
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	154, 190, 262
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	27, 348
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	453
CviJI	RGCY	7 cut(s)	25, 29, 85, 128, 199, 251, 365
CviKI_1	RGCY	7 cut(s)	25, 29, 85, 128, 199, 251, 365
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	330, 426
EarI	CTCTTC	2 cut(s)	330, 426
EciI	GGCGGA	2 cut(s)	32, 230
Eco47I	GGWCC	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	252
FaiI	YATR	5 cut(s)	81, 225, 275, 324, 344
Fnu4HI	GCNGC	2 cut(s)	15, 23
FokI	GGATG	3 cut(s)	161, 197, 269
Fsp4HI	GCNGC	2 cut(s)	15, 23
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	15, 23
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	180, 204
Hpy188III	TCNNGA	2 cut(s)	254, 451
Hpy8I	GTNNAC	2 cut(s)	180, 204
Hpy99I	CGWCG	2 cut(s)	211, 389
HpyAV	CCTTC	2 cut(s)	241, 389
HpyCH4III	ACNGT	2 cut(s)	283, 292
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	206
HspAI	GCGC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	1 cut(s)	11
LweI	GCATC	2 cut(s)	139, 307
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	48
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	46
MboII	GAAGA	5 cut(s)	82, 347, 428, 443, 455
MluCI	AATT	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	450
MseI	TTAA	5 cut(s)	39, 63, 171, 228, 354
MspI	CCGG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	16, 24
PspPI	GGNCC	1 cut(s)	453
SaqAI	TTAA	5 cut(s)	39, 63, 171, 228, 354
SatI	GCNGC	2 cut(s)	15, 23
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	453
SetI	ASST	4 cut(s)	59, 166, 192, 209
SfaNI	GCATC	2 cut(s)	139, 307
SgeI	CNNG	9 cut(s)	20, 38, 43, 136, 147, 264, 266, 359, 400
SinI	GGWCC	1 cut(s)	453
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	4 cut(s)	14, 17, 22, 215
TaaI	ACNGT	2 cut(s)	283, 292
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	60
TauI	GCSGC	2 cut(s)	17, 25
Tru1I	TTAA	5 cut(s)	39, 63, 171, 228, 354
Tru9I	TTAA	5 cut(s)	39, 63, 171, 228, 354
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	453
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.