Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

90678173 .. 90681140

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGAGTCCGTGTCTGGATTTTCTTCTTCTTCAATGGGTTTCATGGAAAATGTGGAGCAACCTCATGTTTTGGCTGTGGATGATAGTGATATTGATCGGAAGCTTATCGAAAAGTTGCTCAAGAATTTCTCTTGCAAAGATATAGATGAAGAACAAGGCACACGGAAGACTATAGAAAGCAAAAAGAAAAGAATCGGACAGACGAGCAAAAAGACTAACCTTTTCGGCGAACCTGACGGAGCAGAAATTGATCACCAGGACTCGCCGGACTTTGGACAGAGCGCTGTGTGCTCTTCCCGTGCAGCTGCACGACCGGGTTTGGGAGCTCTACCTTGCCTTCGTTATCTTTGGCAAGAGGCGGCGGAGAAGCTCGCCTCGGTGTTGAATGATGATGAGTTTTGTTCAGTAAAGGGAAAACTAAGCAGACGCTGTGGTTGGAATATTGTGGTTTGCTTGCTAGGCACGGTACCAAGGTCTCGGGCATCAATGTGGATGCTATCGTTAGAGGTGGGATTACGACATTTAAAGACGAGGTGGGGAGTCTGTGGACGTCGCTGGCTGACTATTACATTAAAAAGGAGCTTATTTGAGAAGGCTAGGGATGTGTTTGAGGAGGCTATGCAAAGTGTGGTGACTGTCAGAGATTTCAGTGTTGTTTTCGATTCGTATTTTCAATTTTTAGAGAGTTTCATCGCCATAAAGAAGGAGATGATGAAAGAGGATGAAGAGGAGGACGAGGACGAGGAAGAAGATGTTCGAACCAATGTAAACTTGTCTGAGGTTGAGTTTAAAAAGACATTAATTAGGGATTTTTCGCTATGTAGTGATAATGATATAGATTTGAGTTTGACCCAGTTGGAGCATCTCATGAATAGAAGACCTAAGCCGGCCAATTCTGTTGTTTTACCTTACGATGAAACTCCAGAAGTCCTCGAGACTCTGGACTTTATATTTGGACTTGGAGGAGAGCTTTGGTACTTTAGGGTCCACTCGGGCAGTGTACGAGAGAATATTGGATCTTACAATAGCCACACCACAAATCATAATCAACTATGCATCCCTTCTGGAAGGAGCATAAGTATTTTGAAGATGCATTCAGTATACAAATGGAACGCGCAAGAGCCATTCGAGGATGCCTTTAAAGTGGCTCCTTCTGACGCAAAGAGACCTTTGTATCTTCAGTTGGCAAAGCTGGAGGAGGATTATGGTCTAACAAAGCGCGCTATGAAGGTGTATCATGAAGCAATTGAGGCTGTTCCGAAACATGACAAGTTGAGCGTGTATGAAATCTATATCGCCCGCGCAGCGGAGAGGCTTGGTGTACCCAAGACAAGGGAGATATATGTGCAAGCAATAGAATCTGGTCTTCCACACAAGGATGTTAAGACAATGTGTTTGAATTTTGTACATCCACAATATGATGCGGATTTCTGGAACAAATGGCTCGAGCTTGAGGTGCAATACGGAAATGAGGATACTTGCGGAGATATGCTTCGAATCAAACGGATTGTATCTGCAAGCTATTGCCAGACAGACTCTGTTCTACCTGAGCATATGATGCAAAAGGATCAGAGGTTGAGCATTGATGGGGAGATAAAAATCAGTGCTAGTTATCATGAAGACATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

543

Amino Acids

62.21

Weight (kDa)

5.43

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_M	PF23220	117 - 260	5.2e-24	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	372 - 469	1.4e-32	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	468 - 528	1.1e-14	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	553
Acc65I	GGTACC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	1101
AccII	CGCG	3 cut(s)	1115, 1221, 1302
AciI	CCGC	6 cut(s)	359, 362, 1300, 1307, 1424, 1482
AclWI	GGATC	2 cut(s)	1024, 1575
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	124, 1399
AcuI	CTGAAG	1 cut(s)	1163
AcyI	GRCGYC	1 cut(s)	550
AfaI	GTAC	5 cut(s)	468, 977, 1002, 1323, 1407
AfeI	AGCGCT	1 cut(s)	283
AfiI	CCNNNNNNNGG	4 cut(s)	272, 320, 1306, 1332
AgsI	TTSAA	5 cut(s)	33, 385, 674, 1087, 1399
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	9 cut(s)	103, 305, 326, 370, 582, 970, 1192, 1450, 1521
AluI	AGCT	9 cut(s)	103, 305, 326, 370, 582, 970, 1192, 1450, 1521
Alw21I	GWGCWC	2 cut(s)	293, 328
Alw26I	GTCTC	3 cut(s)	480, 929, 1159
AlwI	GGATC	2 cut(s)	1024, 1575
AlwNI	CAGNNNCTG	2 cut(s)	429, 1538
Ama87I	CYCGRG	4 cut(s)	477, 932, 991, 1445
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	1 cut(s)	888
ApeKI	GCWGC	3 cut(s)	302, 305, 1304
ApoI	RAATTY	2 cut(s)	124, 1399
ArsI	GACNNNNNNTTYG	4 cut(s)	935, 967, 1378, 1410
AseI	ATTAAT	1 cut(s)	800
Asp700I	GAANNNNTTC	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	466
AspLEI	GCGC	5 cut(s)	284, 1117, 1221, 1223, 1304
AspS9I	GGNCC	1 cut(s)	985
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	245, 643
AsuII	TTCGAA	2 cut(s)	757, 1495
AvaI	CYCGRG	4 cut(s)	477, 932, 991, 1445
AvaII	GGWCC	1 cut(s)	985
BaeI	ACNNNNGTAYC	4 cut(s)	458, 491, 1157, 1190
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	4 cut(s)	173, 883, 1358, 1626
Bbv12I	GWGCWC	2 cut(s)	293, 328
BbvI	GCAGC	3 cut(s)	292, 314, 1316
BccI	CCATC	1 cut(s)	1580
BciT130I	CCWGG	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	1468
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	3 cut(s)	480, 929, 1159
BfaI	CTAG	3 cut(s)	458, 597, 1608
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	1468
BisI	GCNGC	4 cut(s)	303, 306, 360, 1305
BlsI	GCNGC	4 cut(s)	304, 307, 361, 1306
Bme1390I	CCNGG	2 cut(s)	257, 315
Bme18I	GGWCC	1 cut(s)	985
BmeT110I	CYCGRG	4 cut(s)	477, 932, 991, 1445
BmgT120I	GGNCC	1 cut(s)	985
BmiI	GGNNCC	3 cut(s)	468, 986, 1149
BmrFI	CCNGG	2 cut(s)	257, 315
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	8 cut(s)	483, 491, 871, 1065, 1080, 1123, 1411, 1548
BmuI	ACTGGG	1 cut(s)	847
BpiI	GAAGAC	4 cut(s)	173, 883, 1358, 1626
BpmI	CTGGAG	2 cut(s)	906, 1214
Bpu10I	CCTNAGC	2 cut(s)	882, 1548
Bpu14I	TTCGAA	2 cut(s)	757, 1495
BpuEI	CTTGAG	2 cut(s)	104, 1472
BpuMI	CCSGG	1 cut(s)	315
BsaBI	GATNNNNATC	2 cut(s)	93, 1598
BsaHI	GRCGYC	1 cut(s)	550
BsaI	GGTCTC	2 cut(s)	480, 1159
BsaJI	CCNNGG	2 cut(s)	375, 470
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 1063, 1093
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 320, 1306, 1332
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	853
Bse8I	GATNNNNATC	2 cut(s)	93, 1598
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	375, 470
BseGI	GGATG	8 cut(s)	85, 498, 607, 727, 1056, 1138, 1384, 1408
BseJI	GATNNNNATC	2 cut(s)	93, 1598
BseLI	CCNNNNNNNGG	4 cut(s)	272, 320, 1306, 1332
BseMII	CTCAG	2 cut(s)	768, 1539
BseNI	ACTGG	1 cut(s)	853
BsePI	GCGCGC	1 cut(s)	1219
BseRI	GAGGAG	4 cut(s)	626, 743, 978, 1211
BseXI	GCAGC	3 cut(s)	292, 314, 1316
BsgI	GTGCAG	2 cut(s)	291, 321
Bsh1236I	CGCG	3 cut(s)	1115, 1221, 1302
Bsh1285I	CGRYCG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	890
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	314
BsiHKAI	GWGCWC	2 cut(s)	293, 328
BsiHKCI	CYCGRG	4 cut(s)	477, 932, 991, 1445
BsiSI	CCGG	3 cut(s)	266, 314, 887
BslI	CCNNNNNNNGG	4 cut(s)	272, 320, 1306, 1332
BsmAI	GTCTC	3 cut(s)	480, 929, 1159
BsmI	GAATGC	1 cut(s)	1093
BsnI	GGCC	1 cut(s)	890
Bso31I	GGTCTC	2 cut(s)	480, 1159
BsoBI	CYCGRG	4 cut(s)	477, 932, 991, 1445
Bsp119I	TTCGAA	2 cut(s)	757, 1495
Bsp1286I	GDGCHC	2 cut(s)	293, 328
Bsp1407I	TGTACA	1 cut(s)	1405
Bsp143I	GATC	4 cut(s)	94, 250, 1016, 1567
BspACI	CCGC	6 cut(s)	359, 362, 1300, 1307, 1424, 1482
BspANI	GGCC	1 cut(s)	890
BspCNI	CTCAG	2 cut(s)	769, 1540
BspFNI	CGCG	3 cut(s)	1115, 1221, 1302
BspHI	TCATGA	3 cut(s)	867, 1237, 1615
BspLI	GGNNCC	3 cut(s)	468, 986, 1149
BspPI	GGATC	2 cut(s)	1024, 1575
BspQI	GCTCTTC	1 cut(s)	298
BspT104I	TTCGAA	2 cut(s)	757, 1495
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	2 cut(s)	480, 1159
BsrFI	RCCGGY	1 cut(s)	886
BsrGI	TGTACA	1 cut(s)	1405
BsrI	ACTGG	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	375, 470
BssHII	GCGCGC	1 cut(s)	1219
BssMI	GATC	4 cut(s)	94, 250, 1016, 1567
BssNAI	GTATAC	1 cut(s)	1102
BssNI	GRCGYC	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	470
Bst1107I	GTATAC	1 cut(s)	1102
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	466, 637
Bst6I	CTCTTC	2 cut(s)	298, 720
BstACI	GRCGYC	1 cut(s)	550
BstAPI	GCANNNNNTGC	1 cut(s)	1558
BstAUI	TGTACA	1 cut(s)	1405
BstBI	TTCGAA	2 cut(s)	757, 1495
BstC8I	GCNNGC	8 cut(s)	372, 455, 557, 888, 1221, 1300, 1350, 1519
BstDEI	CTNAG	4 cut(s)	419, 777, 882, 1548
BstF5I	GGATG	8 cut(s)	85, 498, 607, 727, 1056, 1138, 1384, 1408
BstFNI	CGCG	3 cut(s)	1115, 1221, 1302
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	5 cut(s)	284, 1117, 1221, 1223, 1304
BstKTI	GATC	4 cut(s)	97, 253, 1019, 1570
BstMAI	GTCTC	3 cut(s)	480, 929, 1159
BstMBI	GATC	4 cut(s)	94, 250, 1016, 1567
BstMCI	CGRYCG	1 cut(s)	314
BstMWI	GCNNNNNNNGC	6 cut(s)	288, 459, 1250, 1304, 1456, 1558
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	1627
BstSCI	CCNGG	2 cut(s)	255, 313
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	3 cut(s)	1115, 1221, 1302
BstV1I	GCAGC	3 cut(s)	292, 314, 1316
BstV2I	GAAGAC	4 cut(s)	173, 883, 1358, 1626
BstX2I	RGATCY	1 cut(s)	1016
BstYI	RGATCY	1 cut(s)	1016
BstZ17I	GTATAC	1 cut(s)	1102
BsuI	GTATCC	1 cut(s)	1468
BsuRI	GGCC	1 cut(s)	890
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	8 cut(s)	85, 498, 607, 727, 1056, 1138, 1384, 1408
BtsI	GCAGTG	1 cut(s)	1003
BtsIMutI	CAGTG	3 cut(s)	655, 1003, 1609
Cac8I	GCNNGC	8 cut(s)	372, 455, 557, 888, 1221, 1300, 1350, 1519
CaiI	CAGNNNCTG	2 cut(s)	429, 1538
CciI	TCATGA	3 cut(s)	867, 1237, 1615
CfoI	GCGC	5 cut(s)	284, 1117, 1221, 1223, 1304
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	985
CseI	GACGC	2 cut(s)	435, 1166
Csp6I	GTAC	5 cut(s)	467, 976, 1001, 1322, 1406
CviAII	CATG	7 cut(s)	43, 65, 868, 1238, 1265, 1616, 1624
CviQI	GTAC	5 cut(s)	467, 976, 1001, 1322, 1406
DdeI	CTNAG	4 cut(s)	419, 777, 882, 1548
DpnI	GATC	4 cut(s)	96, 252, 1018, 1569
DpnII	GATC	4 cut(s)	94, 250, 1016, 1567
DraI	TTTAAA	3 cut(s)	525, 790, 1141
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	2 cut(s)	298, 720
EarI	CTCTTC	2 cut(s)	298, 720
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	2 cut(s)	480, 1159
Eco47I	GGWCC	1 cut(s)	985
Eco47III	AGCGCT	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	1163
Eco88I	CYCGRG	4 cut(s)	477, 932, 991, 1445
EcoICRI	GAGCTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	3 cut(s)	1058, 1095, 1629
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	7 cut(s)	46, 68, 871, 1241, 1268, 1619, 1627
FatI	CATG	7 cut(s)	42, 64, 867, 1237, 1264, 1615, 1623
FauI	CCCGC	1 cut(s)	1307
FauNDI	CATATG	1 cut(s)	1554
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	4 cut(s)	303, 306, 360, 1305
FokI	GGATG	8 cut(s)	92, 505, 614, 734, 1043, 1145, 1391, 1395
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	303, 306, 360, 1305
FspBI	CTAG	3 cut(s)	458, 597, 1608
GlaI	GCGC	5 cut(s)	283, 1116, 1220, 1222, 1303
GluI	GCNGC	4 cut(s)	303, 306, 360, 1305
GsuI	CTGGAG	2 cut(s)	906, 1214
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	890
HapII	CCGG	3 cut(s)	266, 314, 887
HgaI	GACGC	2 cut(s)	435, 1166
HhaI	GCGC	5 cut(s)	284, 1117, 1221, 1223, 1304
Hin1I	GRCGYC	1 cut(s)	550
Hin1II	CATG	7 cut(s)	46, 68, 871, 1241, 1268, 1619, 1627
Hin6I	GCGC	5 cut(s)	282, 1115, 1219, 1221, 1302
HinP1I	GCGC	5 cut(s)	282, 1115, 1219, 1221, 1302
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	9 cut(s)	5, 192, 260, 540, 662, 937, 1358, 1497, 1535
HpaII	CCGG	3 cut(s)	266, 314, 887
HphI	GGTGA	2 cut(s)	245, 643
Hpy166II	GTNNAC	6 cut(s)	548, 769, 988, 1001, 1102, 1322
Hpy188I	TCNGA	7 cut(s)	99, 197, 641, 778, 1156, 1260, 1572
Hpy8I	GTNNAC	6 cut(s)	548, 769, 988, 1001, 1102, 1322
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	7 cut(s)	347, 586, 697, 1062, 1071, 1161, 1222
HpyCH4III	ACNGT	2 cut(s)	466, 637
HpyCH4IV	ACGT	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	288, 459, 1250, 1304, 1456, 1558
HpyF3I	CTNAG	4 cut(s)	419, 777, 882, 1548
HpySE526I	ACGT	1 cut(s)	550
Hsp92I	GRCGYC	1 cut(s)	550
Hsp92II	CATG	7 cut(s)	46, 68, 871, 1241, 1268, 1619, 1627
HspAI	GCGC	5 cut(s)	282, 1115, 1219, 1221, 1302
KpnI	GGTACC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	94, 250, 1016, 1567
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	7 cut(s)	55, 239, 323, 579, 859, 1071, 1153
Lsp1109I	GCAGC	3 cut(s)	292, 314, 1316
LweI	GCATC	8 cut(s)	483, 491, 871, 1065, 1080, 1123, 1411, 1548
MaeI	CTAG	3 cut(s)	458, 597, 1608
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	4 cut(s)	96, 252, 1018, 1569
MboI	GATC	4 cut(s)	94, 250, 1016, 1567
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	1 cut(s)	1016
MhlI	GDGCHC	2 cut(s)	293, 328
MluCI	AATT	7 cut(s)	124, 246, 674, 801, 892, 1245, 1399
MlyI	GAGTC	5 cut(s)	14, 254, 549, 931, 1529
MmeI	TCCRAC	2 cut(s)	416, 837
Mph1103I	ATGCAT	3 cut(s)	1058, 1095, 1629
MroNI	GCCGGC	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	6 cut(s)	524, 572, 789, 800, 1140, 1383
MslI	CAYNNNNRTG	2 cut(s)	487, 1377
MspA1I	CMGCKG	2 cut(s)	305, 1307
MspI	CCGG	3 cut(s)	266, 314, 887
MspR9I	CCNGG	2 cut(s)	257, 315
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	1 cut(s)	1093
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	3 cut(s)	1115, 1221, 1302
MwoI	GCNNNNNNNGC	6 cut(s)	288, 459, 1250, 1304, 1456, 1558
NaeI	GCCGGC	1 cut(s)	888
NciI	CCSGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	1554
NdeII	GATC	4 cut(s)	94, 250, 1016, 1567
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	7 cut(s)	46, 68, 871, 1241, 1268, 1619, 1627
NlaIV	GGNNCC	3 cut(s)	468, 986, 1149
NmuCI	GTSAC	1 cut(s)	631
NsiI	ATGCAT	3 cut(s)	1058, 1095, 1629
NspI	RCATGY	1 cut(s)	1627
NspV	TTCGAA	2 cut(s)	757, 1495
PaeR7I	CTCGAG	2 cut(s)	932, 1445
PagI	TCATGA	3 cut(s)	867, 1237, 1615
PauI	GCGCGC	1 cut(s)	1219
PciSI	GCTCTTC	1 cut(s)	298
PctI	GAATGC	1 cut(s)	1093
PdiI	GCCGGC	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	4 cut(s)	192, 662, 1358, 1497
PkrI	GCNGC	4 cut(s)	304, 307, 361, 1306
PleI	GAGTC	5 cut(s)	13, 254, 548, 931, 1529
PpsI	GAGTC	5 cut(s)	13, 254, 548, 931, 1529
PshBI	ATTAAT	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	468, 986, 1149
PspPI	GGNCC	1 cut(s)	985
PspXI	VCTCGAGB	1 cut(s)	1445
PstNI	CAGNNNCTG	2 cut(s)	429, 1538
PsuI	RGATCY	1 cut(s)	1016
PteI	GCGCGC	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	5 cut(s)	468, 977, 1002, 1323, 1407
RsaNI	GTAC	5 cut(s)	467, 976, 1001, 1322, 1406
RseI	CAYNNNNRTG	2 cut(s)	487, 1377
SacI	GAGCTC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	298
SaqAI	TTAA	6 cut(s)	524, 572, 789, 800, 1140, 1383
SatI	GCNGC	4 cut(s)	303, 306, 360, 1305
Sau3AI	GATC	4 cut(s)	94, 250, 1016, 1567
Sau96I	GGNCC	1 cut(s)	985
SchI	GAGTC	5 cut(s)	14, 254, 549, 931, 1529
ScrFI	CCNGG	2 cut(s)	257, 315
SduI	GDGCHC	2 cut(s)	293, 328
SfaNI	GCATC	8 cut(s)	483, 491, 871, 1065, 1080, 1123, 1411, 1548
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	2 cut(s)	932, 1445
SfuI	TTCGAA	2 cut(s)	757, 1495
SinI	GGWCC	1 cut(s)	985
SlaI	CTCGAG	2 cut(s)	932, 1445
SmiMI	CAYNNNNRTG	2 cut(s)	487, 1377
SmlI	CTYRAG	4 cut(s)	119, 932, 1445, 1451
SmoI	CTYRAG	4 cut(s)	119, 932, 1445, 1451
Sse9I	AATT	7 cut(s)	124, 246, 674, 801, 892, 1245, 1399
SsiI	CCGC	6 cut(s)	359, 362, 1300, 1307, 1424, 1482
SspI	AATATT	2 cut(s)	442, 1012
SspMI	CTAG	3 cut(s)	458, 597, 1608
SstI	GAGCTC	1 cut(s)	328
StyD4I	CCNGG	2 cut(s)	255, 313
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	466, 637
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	7 cut(s)	108, 660, 757, 933, 1128, 1446, 1495
TasI	AATT	7 cut(s)	124, 246, 674, 801, 892, 1245, 1399
TatI	WGTACW	1 cut(s)	1405
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	4 cut(s)	192, 662, 1358, 1497
Tru1I	TTAA	6 cut(s)	524, 572, 789, 800, 1140, 1383
Tru9I	TTAA	6 cut(s)	524, 572, 789, 800, 1140, 1383
TscAI	CASTG	3 cut(s)	655, 1003, 1609
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	302, 305, 1304
Tsp45I	GTSAC	1 cut(s)	631
TspGWI	ACGGA	4 cut(s)	178, 252, 1479, 1519
TspRI	CASTG	3 cut(s)	655, 1003, 1609
VpaK11BI	GGWCC	1 cut(s)	985
VspI	ATTAAT	1 cut(s)	800
XapI	RAATTY	2 cut(s)	124, 1399
XceI	RCATGY	1 cut(s)	1627
XhoI	CTCGAG	2 cut(s)	932, 1445
XmiI	GTMKAC	1 cut(s)	1101
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	3 cut(s)	458, 597, 1608
ZraI	GACGTC	1 cut(s)	551
Zsp2I	ATGCAT	3 cut(s)	1058, 1095, 1629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.