Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024345.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

2320 .. 2736

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024345.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcatcccttctggaaggagcataagtattttgaagatgcattcaaagtgtatgaaaaggccacccaaatgttcaagtacccgcatgtcaaagacatatgtgaagagacatggggggacacaaatggaacgcgcaagagggctattcgaggatgcctttatagacttaaaatggctccttctgacacaaagaaacctttgtatcttcagtttgcaaagttggaggaggattatggtttagcaaagcgcgctatgaaggtatatcatgaagcaattgaggctgttccgaaacatgacaagttgagcgtgtatgaaatctatatcgcccgcgcagcggagaggctgcttggtgtccccaagacaaggaaagatatatgtgcaaacaatagaatctggtcttccacacaaggatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

138

Amino Acids

16.25

Weight (kDa)

9.3

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	133, 249, 330
AciI	CCGC	3 cut(s)	83, 328, 335
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	334, 363
AgsI	TTSAA	3 cut(s)	35, 46, 76
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	332, 343
AspLEI	GCGC	4 cut(s)	135, 249, 251, 332
BaeI	ACNNNNGTAYC	2 cut(s)	185, 218
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	330, 344
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	333, 344
BlsI	GCNGC	2 cut(s)	334, 345
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	3 cut(s)	13, 28, 143
BpiI	GAAGAC	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 363
BseGI	GGATG	3 cut(s)	4, 158, 416
BseLI	CCNNNNNNNGG	2 cut(s)	334, 363
BsePI	GCGCGC	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	330, 344
Bsh1236I	CGCG	3 cut(s)	133, 249, 330
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	131, 338
BslI	CCNNNNNNNGG	2 cut(s)	334, 363
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	131, 338
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	62
BspACI	CCGC	3 cut(s)	83, 328, 335
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	3 cut(s)	133, 249, 330
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	177
BssHII	GCGCGC	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	249, 328
BstF5I	GGATG	3 cut(s)	4, 158, 416
BstFNI	CGCG	3 cut(s)	133, 249, 330
BstHHI	GCGC	4 cut(s)	135, 249, 251, 332
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 278, 332
BstNSI	RCATGY	1 cut(s)	89
BstUI	CGCG	3 cut(s)	133, 249, 330
BstV1I	GCAGC	2 cut(s)	330, 344
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	4, 158, 416
Cac8I	GCNNGC	2 cut(s)	249, 328
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	4 cut(s)	135, 249, 251, 332
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	86, 111, 266, 293
CviJI	RGCY	5 cut(s)	62, 143, 176, 281, 343
CviKI_1	RGCY	5 cut(s)	62, 143, 176, 281, 343
CviQI	GTAC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	191
EcoT22I	ATGCAT	2 cut(s)	6, 43
FaeI	CATG	4 cut(s)	89, 114, 269, 296
FaqI	GGGAC	2 cut(s)	131, 338
FatI	CATG	4 cut(s)	85, 110, 265, 292
FauI	CCCGC	2 cut(s)	90, 335
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	333, 344
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	333, 344
GlaI	GCGC	4 cut(s)	134, 248, 250, 331
GluI	GCNGC	2 cut(s)	333, 344
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	4 cut(s)	135, 249, 251, 332
Hin1II	CATG	4 cut(s)	89, 114, 269, 296
Hin6I	GCGC	4 cut(s)	133, 247, 249, 330
HinP1I	GCGC	4 cut(s)	133, 247, 249, 330
HinfI	GANTC	1 cut(s)	390
Hpy188I	TCNGA	2 cut(s)	184, 288
Hpy188III	TCNNGA	2 cut(s)	13, 266
HpyAV	CCTTC	4 cut(s)	10, 19, 189, 250
HpyCH4V	TGCA	4 cut(s)	4, 41, 215, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 278, 332
Hsp92II	CATG	4 cut(s)	89, 114, 269, 296
HspAI	GCGC	4 cut(s)	133, 247, 249, 330
LmnI	GCTCC	2 cut(s)	19, 181
LpnPI	CCDG	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	330, 344
LweI	GCATC	3 cut(s)	13, 28, 143
MboII	GAAGA	4 cut(s)	47, 116, 197, 390
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	132, 143, 217, 220, 271, 333
Mph1103I	ATGCAT	2 cut(s)	6, 43
MseI	TTAA	2 cut(s)	168, 415
MslI	CAYNNNNRTG	2 cut(s)	68, 409
MspA1I	CMGCKG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	41
MvnI	CGCG	3 cut(s)	133, 249, 330
MwoI	GCNNNNNNNGC	3 cut(s)	248, 278, 332
NdeI	CATATG	1 cut(s)	98
NlaIII	CATG	4 cut(s)	89, 114, 269, 296
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	6, 43
NspI	RCATGY	1 cut(s)	89
PagI	TCATGA	1 cut(s)	265
PauI	GCGCGC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	334, 345
PspN4I	GGNNCC	1 cut(s)	177
PteI	GCGCGC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	68, 409
SaqAI	TTAA	2 cut(s)	168, 415
SatI	GCNGC	2 cut(s)	333, 344
SetI	ASST	2 cut(s)	199, 261
SfaNI	GCATC	3 cut(s)	13, 28, 143
SmiMI	CAYNNNNRTG	2 cut(s)	68, 409
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	83, 328, 335
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	168, 415
Tru9I	TTAA	2 cut(s)	168, 415
TseI	GCWGC	2 cut(s)	332, 343
TspDTI	ATGAA	4 cut(s)	69, 269, 282, 327
XceI	RCATGY	1 cut(s)	89
Zsp2I	ATGCAT	2 cut(s)	6, 43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.