Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

56120218 .. 56130717

Gene Structure 10500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATGTCAGCTTTGTTTATGAATTATAATAAAAATCACTTCTTAACCAGCAAACATGAATTGATCACTCAAATTTACAACCGAGTCCACTCAGCTCTAGGTATTCCAATCGAGACCTCGCTTAGGGTTTACCGGAGGTACTTGCAGTTTGACCCTACTTATGTGGAAGACTACATTAATTTCTTGATCGATTCTAGTCTTTGGCAAGATGAGGCGGAGAAGCTCGCCTCGAGGGAGGCTTATAGTTTAGAACACAATGAGTCTATTGTTGATCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

92

Amino Acids

10.99

Weight (kDa)

5.45

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AbsI	CCTCGAGG	1 cut(s)	229
AciI	CCGC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	11, 95, 223
AluI	AGCT	3 cut(s)	11, 95, 223
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	72
AseI	ATTAAT	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	98, 195
BmeT110I	CYCGRG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	105
BshVI	ATCGAT	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	63, 186, 271
BspACI	CCGC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	107
BssMI	GATC	3 cut(s)	63, 186, 271
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	91, 122
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstKTI	GATC	3 cut(s)	66, 189, 274
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	63, 186, 271
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	11, 95, 223, 239
CviKI_1	RGCY	4 cut(s)	11, 95, 223, 239
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	2 cut(s)	91, 122
DpnI	GATC	3 cut(s)	65, 188, 273
DpnII	GATC	3 cut(s)	63, 186, 271
EciI	GGCGGA	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	59
FaiI	YATR	5 cut(s)	20, 27, 57, 162, 243
FatI	CATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	63
FspBI	CTAG	2 cut(s)	98, 195
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	3 cut(s)	84, 191, 260
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	88, 130
Hpy188III	TCNNGA	2 cut(s)	112, 184
Hpy8I	GTNNAC	2 cut(s)	88, 130
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	91, 122
Hsp92II	CATG	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 186, 271
LpnPI	CCDG	2 cut(s)	61, 146
MaeI	CTAG	2 cut(s)	98, 195
MalI	GATC	3 cut(s)	65, 188, 273
MboI	GATC	3 cut(s)	63, 186, 271
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	4 cut(s)	22, 59, 72, 178
MlyI	GAGTC	2 cut(s)	93, 269
MnlI	CCTC	6 cut(s)	127, 129, 205, 225, 229, 238
MseI	TTAA	2 cut(s)	44, 177
MspI	CCGG	1 cut(s)	133
NdeII	GATC	3 cut(s)	63, 186, 271
NlaIII	CATG	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	191
PleI	GAGTC	2 cut(s)	92, 268
PpsI	GAGTC	2 cut(s)	92, 268
PshBI	ATTAAT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	229
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	44, 177
Sau3AI	GATC	3 cut(s)	63, 186, 271
SchI	GAGTC	2 cut(s)	93, 269
SetI	ASST	6 cut(s)	13, 97, 103, 119, 140, 225
Sfr274I	CTCGAG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	22, 59, 72, 178
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	98, 195
TaqI	TCGA	3 cut(s)	111, 189, 230
TasI	AATT	4 cut(s)	22, 59, 72, 178
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	44, 177
Tru9I	TTAA	2 cut(s)	44, 177
TspDTI	ATGAA	2 cut(s)	35, 72
VspI	ATTAAT	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	72
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	2 cut(s)	98, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.