Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

11290485 .. 11303278

Gene Structure 12794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTGACGAAGGAGAAGGAGAGCCTGGGTACACTAGAGTCTACTCGGGCAGTGTATGAGAGGATATTGGATTTGAGAATAGCCACACCTCAAATAATAATCAACCATGCATTGCTTCTGGAAGAACATAAATACTTTGAAGATGCATTTAAAGTCTATGAAAAGGGTACTCAAATATTCAAGTACCCGCATGTCAAAGACATATGGATTATATATCTCTCTAAATTTGTAAAAAGATATGGGAAGAATAAGCTGGAACGTGCAAGACTGCTCTTTGAGGATGCTGTTAAAGCGGCTCCTGCTGATGCGAAGAAATCATTGTATCTTCAATTTGCAAAGCTGGAGGAGGATTATGGTCTAGCAAAGCGGGCTATGAAGGTCTATGATGAAGCAACTAAGGCTGTTCCAAACCATGAAAAGTTGAGCATGTATGAAATCTATATTGCACGTGCAGCTGAGATATTTGGGGTCCCCAAAACAAGGGAAATATATGAGCAAGCAATAGAATCTGGACTCCCTGACAAAGATGTGAAGACAATGTGTCTAAAGTATGCTAAGCTCGAGAAGAGCTTGGGCGAAATTGATCGTGCTCGGAGAGTTTACGTATTTGCATCTCAGTTTTTAGATCCACGATCGGATGCAGAATTCTGGAACAAATGGCATGAGTTTGAGCTATTCTACATGCTTCGAATCAAACGGAGTGTTTCTGCAAGCTATAGCCAGACGCACTTTATTCTACCCGAGTATCTGATGCAAAAGGATCAGAGGTTGAGCATTGACAAGGCAAAAGACAAATTGAAACAGGCTGGAGTCCCCGAAGATGAAATGGCTACTGTTGAGAGGCAGTTGGCTCCTGCGATCAACGATACACCCTCTAAAGACAGCAACAGAAAAGTGGGCTTTGTGAGTGCTGGAATAGAATCACAGATTGATGGAGGGATACAAGTTGCTGCAAATCACGAAGACATTGAACTACCAGAAGAAAGTGATTCTGAAGATGAGGCAAATGTTGAAATAGCACAAAAGGAGGTCCCAGCTGCTGTTTTTGGAGATTTGGCTAACAAAAGAAAGGATTCAGAGGGCGGAGGCAAGGATGGTGAGAGCCGCCTTGGTGCTCTTGAGAGAATAAAGAGGCTGAAAAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

382

Amino Acids

43.74

Weight (kDa)

6.46

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_C	PF23231	6 - 282	2.4e-124	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	5 cut(s)	188, 293, 367, 1083, 1105
AclWI	GGATC	2 cut(s)	620, 768
AcsI	RAATTY	2 cut(s)	224, 644
AcuI	CTGAAG	1 cut(s)	1014
AcvI	CACGTG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	31, 169, 185
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	6 cut(s)	140, 181, 329, 799, 971, 1013
AhdI	GACNNNNNGTC	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	8 cut(s)	253, 340, 455, 559, 570, 673, 714, 1037
AluI	AGCT	8 cut(s)	253, 340, 455, 559, 570, 673, 714, 1037
Alw21I	GWGCWC	2 cut(s)	592, 1117
AlwI	GGATC	2 cut(s)	620, 768
AlwNI	CAGNNNCTG	1 cut(s)	1040
Ama87I	CYCGRG	3 cut(s)	45, 560, 740
ApeKI	GCWGC	3 cut(s)	452, 950, 1037
ApoI	RAATTY	2 cut(s)	224, 644
Asp700I	GAANNNNTTC	1 cut(s)	1072
AspS9I	GGNCC	2 cut(s)	469, 1030
AsuHPI	GGTGA	1 cut(s)	1109
AsuII	TTCGAA	1 cut(s)	688
AvaI	CYCGRG	3 cut(s)	45, 560, 740
AvaII	GGWCC	2 cut(s)	469, 1030
BaeI	ACNNNNGTAYC	2 cut(s)	728, 761
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	539, 969
Bbv12I	GWGCWC	2 cut(s)	592, 1117
BbvI	GCAGC	3 cut(s)	464, 937, 1024
BccI	CCATC	2 cut(s)	926, 1088
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	933
BfaI	CTAG	2 cut(s)	35, 359
BfmI	CTRYAG	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	5 cut(s)	294, 453, 951, 1038, 1105
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	5 cut(s)	295, 454, 952, 1039, 1106
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	469, 1030
BmeRI	GACNNNNNGTC	1 cut(s)	540
BmeT110I	CYCGRG	3 cut(s)	45, 560, 740
BmgT120I	GGNCC	2 cut(s)	469, 1030
BmiI	GGNNCC	5 cut(s)	297, 470, 471, 852, 1032
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	6 cut(s)	133, 271, 295, 620, 628, 741
BpiI	GAAGAC	2 cut(s)	539, 969
BpmI	CTGGAG	2 cut(s)	362, 828
Bpu1102I	GCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	1139
BsaAI	YACGTR	2 cut(s)	449, 604
BsaJI	CCNNGG	2 cut(s)	25, 1108
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	25, 1108
BseGI	GGATG	3 cut(s)	286, 643, 1099
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	447, 629
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	464, 937, 1024
BseYI	CCCAGC	1 cut(s)	1033
BsgI	GTGCAG	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	592, 1117
BsiHKCI	CYCGRG	3 cut(s)	45, 560, 740
BslFI	GGGAC	3 cut(s)	455, 797, 1016
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmFI	GGGAC	3 cut(s)	455, 797, 1016
BsoBI	CYCGRG	3 cut(s)	45, 560, 740
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	592, 1117
Bsp143I	GATC	5 cut(s)	583, 625, 632, 760, 858
Bsp1720I	GCTNAGC	1 cut(s)	555
BspACI	CCGC	5 cut(s)	188, 293, 367, 1083, 1105
BspCNI	CTCAG	2 cut(s)	448, 628
BspLI	GGNNCC	5 cut(s)	297, 470, 471, 852, 1032
BspPI	GGATC	2 cut(s)	620, 768
BspQI	GCTCTTC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	25, 1108
BssMI	GATC	5 cut(s)	583, 625, 632, 760, 858
BssT1I	CCWWGG	1 cut(s)	1108
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	1 cut(s)	560
BstBAI	YACGTR	2 cut(s)	449, 604
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	369, 498, 712
BstDEI	CTNAG	4 cut(s)	396, 456, 555, 615
BstF5I	GGATG	3 cut(s)	286, 643, 1099
BstKTI	GATC	5 cut(s)	586, 628, 635, 763, 861
BstMBI	GATC	5 cut(s)	583, 625, 632, 760, 858
BstMCI	CGRYCG	1 cut(s)	635
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 299, 368, 398, 452
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	3 cut(s)	194, 430, 685
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	715
BstSNI	TACGTA	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	464, 937, 1024
BstV2I	GAAGAC	2 cut(s)	539, 969
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	933
BtsCI	GGATG	3 cut(s)	286, 643, 1099
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	369, 498, 712
CaiI	CAGNNNCTG	1 cut(s)	1040
Cfr13I	GGNCC	2 cut(s)	469, 1030
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	3 cut(s)	30, 168, 184
CviAII	CATG	6 cut(s)	107, 191, 413, 427, 662, 682
CviQI	GTAC	3 cut(s)	30, 168, 184
DdeI	CTNAG	4 cut(s)	396, 456, 555, 615
DpnI	GATC	5 cut(s)	585, 627, 634, 762, 860
DpnII	GATC	5 cut(s)	583, 625, 632, 760, 858
DraI	TTTAAA	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	560
Eam1105I	GACNNNNNGTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	560
EciI	GGCGGA	1 cut(s)	1098
Eco105I	TACGTA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	1108
Eco47I	GGWCC	2 cut(s)	469, 1030
Eco57I	CTGAAG	1 cut(s)	1014
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	3 cut(s)	45, 560, 740
EcoO109I	RGGNCCY	2 cut(s)	469, 1030
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	1108
EcoT22I	ATGCAT	2 cut(s)	112, 148
ErhI	CCWWGG	1 cut(s)	1108
FaeI	CATG	6 cut(s)	110, 194, 416, 430, 665, 685
FaqI	GGGAC	3 cut(s)	455, 797, 1016
FatI	CATG	6 cut(s)	106, 190, 412, 426, 661, 681
FauI	CCCGC	2 cut(s)	195, 360
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	5 cut(s)	294, 453, 951, 1038, 1105
FokI	GGATG	3 cut(s)	293, 650, 1106
Fsp4HI	GCNGC	5 cut(s)	294, 453, 951, 1038, 1105
FspBI	CTAG	2 cut(s)	35, 359
GluI	GCNGC	5 cut(s)	294, 453, 951, 1038, 1105
GsaI	CCCAGC	1 cut(s)	1037
GsuI	CTGGAG	2 cut(s)	362, 828
HgaI	GACGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	110, 194, 416, 430, 665, 685
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	8 cut(s)	38, 506, 513, 690, 810, 920, 989, 1073
HphI	GGTGA	1 cut(s)	1109
Hpy166II	GTNNAC	4 cut(s)	6, 32, 42, 601
Hpy188I	TCNGA	6 cut(s)	594, 637, 750, 765, 994, 1078
Hpy188III	TCNNGA	6 cut(s)	119, 510, 562, 649, 959, 1118
Hpy8I	GTNNAC	4 cut(s)	6, 32, 42, 601
HpyAV	CCTTC	3 cut(s)	4, 10, 370
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	3 cut(s)	259, 448, 603
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 299, 368, 398, 452
HpyF3I	CTNAG	4 cut(s)	396, 456, 555, 615
HpySE526I	ACGT	3 cut(s)	259, 448, 603
Hsp92II	CATG	6 cut(s)	110, 194, 416, 430, 665, 685
KflI	GGGWCCC	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	583, 625, 632, 760, 858
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	2 cut(s)	301, 856
Lsp1109I	GCAGC	3 cut(s)	464, 937, 1024
LweI	GCATC	6 cut(s)	133, 271, 295, 620, 628, 741
MaeI	CTAG	2 cut(s)	35, 359
MaeII	ACGT	3 cut(s)	259, 448, 603
MalI	GATC	5 cut(s)	585, 627, 634, 762, 860
MboI	GATC	5 cut(s)	583, 625, 632, 760, 858
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	592, 1117
MluCI	AATT	5 cut(s)	224, 329, 579, 644, 794
MlyI	GAGTC	3 cut(s)	47, 507, 819
Mph1103I	ATGCAT	2 cut(s)	112, 148
MroXI	GAANNNNTTC	1 cut(s)	1072
MseI	TTAA	2 cut(s)	150, 288
MspA1I	CMGCKG	2 cut(s)	455, 1037
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	290, 299, 368, 398, 452
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	5 cut(s)	583, 625, 632, 760, 858
NlaIII	CATG	6 cut(s)	110, 194, 416, 430, 665, 685
NlaIV	GGNNCC	5 cut(s)	297, 470, 471, 852, 1032
NsiI	ATGCAT	2 cut(s)	112, 148
NspI	RCATGY	3 cut(s)	194, 430, 685
NspV	TTCGAA	1 cut(s)	688
PaeR7I	CTCGAG	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	1072
PfeI	GAWTC	5 cut(s)	506, 690, 920, 989, 1073
PkrI	GCNGC	5 cut(s)	295, 454, 952, 1039, 1106
Ple19I	CGATCG	1 cut(s)	635
PleI	GAGTC	3 cut(s)	46, 507, 818
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
PpsI	GAGTC	3 cut(s)	46, 507, 818
Ppu21I	YACGTR	2 cut(s)	449, 604
PpuMI	RGGWCCY	2 cut(s)	469, 1030
Psp5II	RGGWCCY	2 cut(s)	469, 1030
Psp6I	CCWGG	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	1033
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	5 cut(s)	297, 470, 471, 852, 1032
PspPI	GGNCC	2 cut(s)	469, 1030
PspPPI	RGGWCCY	2 cut(s)	469, 1030
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	625
PvuI	CGATCG	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	455, 1037
RsaI	GTAC	3 cut(s)	31, 169, 185
RsaNI	GTAC	3 cut(s)	30, 168, 184
SapI	GCTCTTC	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	150, 288
SatI	GCNGC	5 cut(s)	294, 453, 951, 1038, 1105
Sau3AI	GATC	5 cut(s)	583, 625, 632, 760, 858
Sau96I	GGNCC	2 cut(s)	469, 1030
SchI	GAGTC	3 cut(s)	47, 507, 819
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	592, 1117
SfaNI	GCATC	6 cut(s)	133, 271, 295, 620, 628, 741
SfcI	CTRYAG	1 cut(s)	715
Sfr274I	CTCGAG	1 cut(s)	560
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	2 cut(s)	469, 1030
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	560, 1118
SmoI	CTYRAG	2 cut(s)	560, 1118
SnaBI	TACGTA	1 cut(s)	604
Sse9I	AATT	5 cut(s)	224, 329, 579, 644, 794
SsiI	CCGC	5 cut(s)	188, 293, 367, 1083, 1105
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	35, 359
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	1108
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	3 cut(s)	262, 451, 606
TaqI	TCGA	2 cut(s)	561, 688
TasI	AATT	5 cut(s)	224, 329, 579, 644, 794
TauI	GCSGC	2 cut(s)	296, 1107
TfiI	GAWTC	5 cut(s)	506, 690, 920, 989, 1073
Tru1I	TTAA	2 cut(s)	150, 288
Tru9I	TTAA	2 cut(s)	150, 288
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	3 cut(s)	452, 950, 1037
TspDTI	ATGAA	6 cut(s)	174, 389, 402, 429, 447, 837
TspGWI	ACGGA	1 cut(s)	712
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	469, 1030
XapI	RAATTY	2 cut(s)	224, 644
XceI	RCATGY	3 cut(s)	194, 430, 685
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	1072
XspI	CTAG	2 cut(s)	35, 359
Zsp2I	ATGCAT	2 cut(s)	112, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.