Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

4990463 .. 4995791

Gene Structure 5329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTCGATCTTTCAAGACCTATACCCCTCACAAGACGACCTTCTCTACGAAGAAGAGCTTCTCCGAAACCCCTATAGCCTCAAGCTATGGTGGCGCTACCTGATTGCCCGATCCGACGCTTCGTTCGACAAGCGTAGAATGATCTACTATCACAATGCACAAGATGCCGCAGATTTGACTTATGTATTTGCAGAGCCAGACGGAGCAGAAATTGGTCACCAGGACTCGCCTGACTTTCGACAGAACGCTGCCTGCTCTTCTCGTGCAGCTGCACGACCGCCTCGCCCGGTGTTGAATGATGATGAGTTTTGTTCAGTAAAGGGGAAAACTAAGCAGACGCTGTGGTTGGAATATTGTGGTTTGCTTGCTAGGCACGGTACCAAGGTCTCGGGCATCAATGTGGATGCTATCATTGTTAAGACATTTAAAGACGAGGTGGGGAGTCTGTGGACGTCGCTGGCTGACTATTACATTAAAAGGAGCTTATTTGAGAAGGCTATTGATGTGTTTGAGGAGGCTATGCAAAGTGTGGTGACTGTGAGAGATTTTAGTGTTGTTTTCGTTTCGTATGTTCAATTTTTGGAGAAGGATGAACAGGAGGACGAGGGAGAAGAAGTTCGAACCAATGTAAACTTGTATGAGGTTGAGTTTAAAAATACATTAATTAGGGATTTTTCGCTATGTAGTGATAATGATATAGATATGAGTTTGACCCAGTTGGAGCATCTCATGAATAGAAGACCTAAGCTGGTCAATTCTTCCTCGACACTCTGGACTTTATATGTGGACTTGGAGGAGAGCTTTGGTACATTAGGCAGGGTCCACTCGGGCAGTGAGCATAAGTATTTTGAAGATGCATTCAAAGTGTATGAAAAGGCCACCCAAATGTTCAAGTACCCGCATGTCAAAGACATATCAAAGCGCGCTATGAAGGTATATCATGAAGCAATTGAGGCTGTTCCGAAACATGACAAGTTGAGCGTGTATGAAATCTATATCGCCCGCGCAGCGGAGAGGCTGCTTGAATCTGGTCTTCCACACAAGGATGTTAAGACAATGTGTTTGAAGTATGCCGAGCTAGAGAAGAGCTTGGCTGAAATTGATCGTGCTCGGAGAGTATATGTATATGGATCACAGTTTTCACATCCACAATATGATGCGGATTTCTGGAACAAATGGCTCGAGTTTGAGGTGCAATACGGCAATGAGGATACTTGCCGAGATATGCTTCGAATCAAACGGAGTGTATCTGCAAGCTATAGCCAGACGGACTCTGTTCTACCTGAGCATATGATGCAAAAGGATCAGAGGGTAGGGCCGGCCCTAGCCCGGCCCATGATGACCCCTACACCAAAGGAGGTCCCGTTGGCTGTTTTTGGACATTTGGCTAACAAGCTTGAAGATGATTCTCCCCATAGCCGCTTTGGTGCACTTGAGAGGATACAGAGGCGAAGACTAGCAGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

489

Amino Acids

56.74

Weight (kDa)

5.63

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_M	PF23220	93 - 253	1.5e-39	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	278 - 305	1.1e-07	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	305 - 437	7.5e-47	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	2 cut(s)	924, 1005
AciI	CCGC	7 cut(s)	168, 278, 899, 1003, 1010, 1160, 1420
AclWI	GGATC	3 cut(s)	105, 1138, 1311
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	3 cut(s)	379, 808, 896
AfiI	CCNNNNNNNGG	2 cut(s)	1009, 1329
AgsI	TTSAA	9 cut(s)	14, 295, 575, 851, 862, 892, 1025, 1066, 1400
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
Alw21I	GWGCWC	2 cut(s)	1111, 1432
Alw26I	GTCTC	1 cut(s)	391
Alw44I	GTGCAC	1 cut(s)	1428
AlwI	GGATC	3 cut(s)	105, 1138, 1311
AlwNI	CAGNNNCTG	1 cut(s)	340
Ama87I	CYCGRG	3 cut(s)	388, 826, 1181
AoxI	GGCC	4 cut(s)	876, 1316, 1320, 1331
ApaLI	GTGCAC	1 cut(s)	1428
ApeKI	GCWGC	5 cut(s)	248, 266, 269, 1007, 1018
ArsI	GACNNNNNNTTYG	4 cut(s)	107, 139, 1045, 1077
AseI	ATTAAT	1 cut(s)	662
Asp700I	GAANNNNTTC	2 cut(s)	57, 615
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	4 cut(s)	96, 924, 926, 1007
AspS9I	GGNCC	5 cut(s)	820, 1316, 1321, 1332, 1360
AsuC2I	CCSGG	2 cut(s)	287, 1330
AsuHPI	GGTGA	2 cut(s)	209, 544
AsuII	TTCGAA	2 cut(s)	619, 1231
AvaI	CYCGRG	3 cut(s)	388, 826, 1181
AvaII	GGWCC	2 cut(s)	820, 1360
BaeGI	GKGCMC	1 cut(s)	1432
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	3 cut(s)	745, 1025, 1459
Bbv12I	GWGCWC	2 cut(s)	1111, 1432
BbvI	GCAGC	5 cut(s)	235, 256, 278, 1005, 1019
BceAI	ACGGC	1 cut(s)	1216
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	2 cut(s)	1204, 1434
BcnI	CCSGG	2 cut(s)	287, 1330
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	4 cut(s)	369, 1079, 1325, 1457
BfmI	CTRYAG	2 cut(s)	73, 1258
BfoI	RGCGCY	1 cut(s)	97
BfuI	GTATCC	2 cut(s)	1204, 1434
BisI	GCNGC	7 cut(s)	168, 249, 267, 270, 1008, 1019, 1420
BlsI	GCNGC	7 cut(s)	169, 250, 268, 271, 1009, 1020, 1421
Bme1390I	CCNGG	3 cut(s)	221, 287, 1330
Bme18I	GGWCC	2 cut(s)	820, 1360
BmeT110I	CYCGRG	3 cut(s)	388, 826, 1181
BmgT120I	GGNCC	5 cut(s)	820, 1316, 1321, 1332, 1360
BmiI	GGNNCC	3 cut(s)	379, 821, 1362
BmrFI	CCNGG	3 cut(s)	221, 287, 1330
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	7 cut(s)	154, 394, 402, 733, 844, 1147, 1284
BmuI	ACTGGG	1 cut(s)	709
BpiI	GAAGAC	3 cut(s)	745, 1025, 1459
Bpu10I	CCTNAGC	2 cut(s)	744, 1284
Bpu14I	TTCGAA	2 cut(s)	619, 1231
BpuEI	CTTGAG	2 cut(s)	65, 1454
BpuMI	CCSGG	2 cut(s)	287, 1330
BsaHI	GRCGYC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	4 cut(s)	600, 630, 1349, 1379
Bsc4I	CCNNNNNNNGG	2 cut(s)	1009, 1329
Bse118I	RCCGGY	1 cut(s)	1318
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	1210
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	4 cut(s)	409, 595, 1051, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	1009, 1329
BseMI	GCAATG	1 cut(s)	1210
BseMII	CTCAG	1 cut(s)	1275
BseNI	ACTGG	1 cut(s)	715
BsePI	GCGCGC	1 cut(s)	922
BseRI	GAGGAG	2 cut(s)	527, 809
BseSI	GKGCMC	1 cut(s)	1432
BseXI	GCAGC	5 cut(s)	235, 256, 278, 1005, 1019
BsgI	GTGCAG	2 cut(s)	255, 285
Bsh1236I	CGCG	2 cut(s)	924, 1005
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	878, 1318, 1322, 1333
BshNI	GGYRCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	1111, 1432
BsiHKCI	CYCGRG	3 cut(s)	388, 826, 1181
BsiSI	CCGG	3 cut(s)	287, 1319, 1330
BslFI	GGGAC	1 cut(s)	1346
BslI	CCNNNNNNNGG	2 cut(s)	1009, 1329
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	1346
BsmI	GAATGC	1 cut(s)	857
BsnI	GGCC	4 cut(s)	878, 1318, 1322, 1333
Bso31I	GGTCTC	1 cut(s)	391
BsoBI	CYCGRG	3 cut(s)	388, 826, 1181
Bsp119I	TTCGAA	2 cut(s)	619, 1231
Bsp1286I	GDGCHC	2 cut(s)	1111, 1432
Bsp143I	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
BspACI	CCGC	7 cut(s)	168, 278, 899, 1003, 1010, 1160, 1420
BspANI	GGCC	4 cut(s)	878, 1318, 1322, 1333
BspCNI	CTCAG	1 cut(s)	1276
BspFNI	CGCG	2 cut(s)	924, 1005
BspHI	TCATGA	2 cut(s)	729, 940
BspLI	GGNNCC	3 cut(s)	379, 821, 1362
BspPI	GGATC	3 cut(s)	105, 1138, 1311
BspQI	GCTCTTC	3 cut(s)	48, 262, 1079
BspT104I	TTCGAA	2 cut(s)	619, 1231
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	1210
BsrFI	RCCGGY	1 cut(s)	1318
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	1318
BssECI	CCNNGG	1 cut(s)	381
BssHII	GCGCGC	1 cut(s)	922
BssMI	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
BssNI	GRCGYC	1 cut(s)	452
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	377, 538, 1137
Bst6I	CTCTTC	3 cut(s)	48, 262, 1079
BstACI	GRCGYC	1 cut(s)	452
BstAPI	GCANNNNNTGC	2 cut(s)	164, 1294
BstBI	TTCGAA	2 cut(s)	619, 1231
BstC8I	GCNNGC	7 cut(s)	253, 366, 459, 924, 1003, 1255, 1320
BstDEI	CTNAG	3 cut(s)	330, 744, 1284
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	4 cut(s)	409, 595, 1051, 1144
BstFNI	CGCG	2 cut(s)	924, 1005
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	4 cut(s)	96, 924, 926, 1007
BstKTI	GATC	6 cut(s)	9, 113, 144, 1105, 1133, 1306
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 164, 370, 953, 1007, 1294
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	905
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	219, 285, 1328
BstSFI	CTRYAG	2 cut(s)	73, 1258
BstSLI	GKGCMC	1 cut(s)	1432
BstUI	CGCG	2 cut(s)	924, 1005
BstV1I	GCAGC	5 cut(s)	235, 256, 278, 1005, 1019
BstV2I	GAAGAC	3 cut(s)	745, 1025, 1459
BsuI	GTATCC	2 cut(s)	1204, 1434
BsuRI	GGCC	4 cut(s)	878, 1318, 1322, 1333
BtsCI	GGATG	4 cut(s)	409, 595, 1051, 1144
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	838
Cac8I	GCNNGC	7 cut(s)	253, 366, 459, 924, 1003, 1255, 1320
CaiI	CAGNNNCTG	1 cut(s)	340
CciI	TCATGA	2 cut(s)	729, 940
CfoI	GCGC	4 cut(s)	96, 924, 926, 1007
Cfr10I	RCCGGY	1 cut(s)	1318
Cfr13I	GGNCC	5 cut(s)	820, 1316, 1321, 1332, 1360
CseI	GACGC	2 cut(s)	125, 346
Csp6I	GTAC	3 cut(s)	378, 807, 895
CviAII	CATG	5 cut(s)	730, 902, 941, 968, 1336
CviQI	GTAC	3 cut(s)	378, 807, 895
DdeI	CTNAG	3 cut(s)	330, 744, 1284
DpnI	GATC	6 cut(s)	8, 112, 143, 1104, 1132, 1305
DpnII	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
DraI	TTTAAA	2 cut(s)	427, 652
Eam1104I	CTCTTC	3 cut(s)	48, 262, 1079
EarI	CTCTTC	3 cut(s)	48, 262, 1079
Eco130I	CCWWGG	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	820, 1360
Eco88I	CYCGRG	3 cut(s)	388, 826, 1181
Eco91I	GGTNACC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	1360
EcoO65I	GGTNACC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	733, 905, 944, 971, 1339
FalI	AAGNNNNNCTT	4 cut(s)	24, 56, 42, 74
FaqI	GGGAC	1 cut(s)	1346
FatI	CATG	5 cut(s)	729, 901, 940, 967, 1335
FauI	CCCGC	2 cut(s)	906, 1010
FauNDI	CATATG	1 cut(s)	1290
Fnu4HI	GCNGC	7 cut(s)	168, 249, 267, 270, 1008, 1019, 1420
FokI	GGATG	4 cut(s)	416, 602, 1058, 1131
FseI	GGCCGGCC	1 cut(s)	1322
Fsp4HI	GCNGC	7 cut(s)	168, 249, 267, 270, 1008, 1019, 1420
FspBI	CTAG	4 cut(s)	369, 1079, 1325, 1457
GlaI	GCGC	4 cut(s)	95, 923, 925, 1006
GluI	GCNGC	7 cut(s)	168, 249, 267, 270, 1008, 1019, 1420
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	878, 1318, 1322, 1333
HapII	CCGG	3 cut(s)	287, 1319, 1330
HgaI	GACGC	2 cut(s)	125, 346
HhaI	GCGC	4 cut(s)	96, 924, 926, 1007
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	5 cut(s)	733, 905, 944, 971, 1339
Hin6I	GCGC	4 cut(s)	94, 922, 924, 1005
HinP1I	GCGC	4 cut(s)	94, 922, 924, 1005
HindIII	AAGCTT	1 cut(s)	1394
HinfI	GANTC	6 cut(s)	224, 442, 1025, 1233, 1271, 1406
HpaII	CCGG	3 cut(s)	287, 1319, 1330
HphI	GGTGA	2 cut(s)	209, 544
Hpy166II	GTNNAC	5 cut(s)	450, 631, 787, 823, 1430
Hpy188I	TCNGA	6 cut(s)	65, 115, 963, 1113, 1308, 1469
Hpy188III	TCNNGA	5 cut(s)	14, 730, 772, 941, 1168
Hpy8I	GTNNAC	5 cut(s)	450, 631, 787, 823, 1430
Hpy99I	CGWCG	2 cut(s)	119, 457
HpyAV	CCTTC	4 cut(s)	50, 487, 580, 925
HpyCH4III	ACNGT	3 cut(s)	377, 538, 1137
HpyCH4IV	ACGT	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 164, 370, 953, 1007, 1294
HpyF3I	CTNAG	3 cut(s)	330, 744, 1284
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	5 cut(s)	733, 905, 944, 971, 1339
HspAI	GCGC	4 cut(s)	94, 922, 924, 1005
KpnI	GGTACC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	1318
KroNI	GCCGGC	1 cut(s)	1320
Kzo9I	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
LguI	GCTCTTC	3 cut(s)	48, 262, 1079
LmnI	GCTCC	3 cut(s)	203, 480, 721
Lsp1109I	GCAGC	5 cut(s)	235, 256, 278, 1005, 1019
LweI	GCATC	7 cut(s)	154, 394, 402, 733, 844, 1147, 1284
MaeI	CTAG	4 cut(s)	369, 1079, 1325, 1457
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	215, 532
MalI	GATC	6 cut(s)	8, 112, 143, 1104, 1132, 1305
MboI	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
MfeI	CAATTG	1 cut(s)	948
MhlI	GDGCHC	2 cut(s)	1111, 1432
MluCI	AATT	6 cut(s)	210, 575, 663, 754, 948, 1098
MlyI	GAGTC	3 cut(s)	218, 451, 1265
MmeI	TCCRAC	3 cut(s)	138, 327, 699
Mph1103I	ATGCAT	1 cut(s)	859
MroNI	GCCGGC	1 cut(s)	1318
MroXI	GAANNNNTTC	2 cut(s)	57, 615
MseI	TTAA	6 cut(s)	417, 426, 474, 651, 662, 1050
MslI	CAYNNNNRTG	3 cut(s)	398, 884, 1044
MspA1I	CMGCKG	2 cut(s)	269, 1010
MspI	CCGG	3 cut(s)	287, 1319, 1330
MspR9I	CCNGG	3 cut(s)	221, 287, 1330
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	924, 1005
MwoI	GCNNNNNNNGC	6 cut(s)	91, 164, 370, 953, 1007, 1294
NaeI	GCCGGC	1 cut(s)	1320
NciI	CCSGG	2 cut(s)	287, 1330
NdeI	CATATG	1 cut(s)	1290
NdeII	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
NgoMIV	GCCGGC	1 cut(s)	1318
NlaIII	CATG	5 cut(s)	733, 905, 944, 971, 1339
NlaIV	GGNNCC	3 cut(s)	379, 821, 1362
NmeAIII	GCCGAG	2 cut(s)	1099, 1244
NmuCI	GTSAC	2 cut(s)	215, 532
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	905
NspV	TTCGAA	2 cut(s)	619, 1231
PaeR7I	CTCGAG	1 cut(s)	1181
PagI	TCATGA	2 cut(s)	729, 940
PauI	GCGCGC	1 cut(s)	922
PciSI	GCTCTTC	3 cut(s)	48, 262, 1079
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	857
PdiI	GCCGGC	1 cut(s)	1320
PdmI	GAANNNNTTC	2 cut(s)	57, 615
PfeI	GAWTC	3 cut(s)	1025, 1233, 1406
PkrI	GCNGC	7 cut(s)	169, 250, 268, 271, 1009, 1020, 1421
PleI	GAGTC	3 cut(s)	218, 450, 1265
PpsI	GAGTC	3 cut(s)	218, 450, 1265
PpuMI	RGGWCCY	1 cut(s)	1360
PshBI	ATTAAT	1 cut(s)	662
Psp5II	RGGWCCY	1 cut(s)	1360
Psp6I	CCWGG	1 cut(s)	219
PspEI	GGTNACC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	379, 821, 1362
PspPI	GGNCC	5 cut(s)	820, 1316, 1321, 1332, 1360
PspPPI	RGGWCCY	1 cut(s)	1360
PspXI	VCTCGAGB	1 cut(s)	1181
PstNI	CAGNNNCTG	1 cut(s)	340
PteI	GCGCGC	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	269
RigI	GGCCGGCC	1 cut(s)	1322
RsaI	GTAC	3 cut(s)	379, 808, 896
RsaNI	GTAC	3 cut(s)	378, 807, 895
RseI	CAYNNNNRTG	3 cut(s)	398, 884, 1044
SapI	GCTCTTC	3 cut(s)	48, 262, 1079
SaqAI	TTAA	6 cut(s)	417, 426, 474, 651, 662, 1050
SatI	GCNGC	7 cut(s)	168, 249, 267, 270, 1008, 1019, 1420
Sau3AI	GATC	6 cut(s)	6, 110, 141, 1102, 1130, 1303
Sau96I	GGNCC	5 cut(s)	820, 1316, 1321, 1332, 1360
SchI	GAGTC	3 cut(s)	218, 451, 1265
ScrFI	CCNGG	3 cut(s)	221, 287, 1330
SduI	GDGCHC	2 cut(s)	1111, 1432
SfaNI	GCATC	7 cut(s)	154, 394, 402, 733, 844, 1147, 1284
SfcI	CTRYAG	2 cut(s)	73, 1258
Sfr274I	CTCGAG	1 cut(s)	1181
SfuI	TTCGAA	2 cut(s)	619, 1231
SinI	GGWCC	2 cut(s)	820, 1360
SlaI	CTCGAG	1 cut(s)	1181
SmiMI	CAYNNNNRTG	3 cut(s)	398, 884, 1044
SmlI	CTYRAG	3 cut(s)	80, 1181, 1433
SmoI	CTYRAG	3 cut(s)	80, 1181, 1433
Sse9I	AATT	6 cut(s)	210, 575, 663, 754, 948, 1098
SsiI	CCGC	7 cut(s)	168, 278, 899, 1003, 1010, 1160, 1420
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	4 cut(s)	369, 1079, 1325, 1457
StyD4I	CCNGG	3 cut(s)	219, 285, 1328
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	377, 538, 1137
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	7 cut(s)	5, 126, 238, 619, 764, 1182, 1231
TasI	AATT	6 cut(s)	210, 575, 663, 754, 948, 1098
TauI	GCSGC	2 cut(s)	170, 1422
TfiI	GAWTC	3 cut(s)	1025, 1233, 1406
Tru1I	TTAA	6 cut(s)	417, 426, 474, 651, 662, 1050
Tru9I	TTAA	6 cut(s)	417, 426, 474, 651, 662, 1050
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	2 cut(s)	215, 532
TseI	GCWGC	5 cut(s)	248, 266, 269, 1007, 1018
Tsp45I	GTSAC	2 cut(s)	215, 532
TspDTI	ATGAA	6 cut(s)	606, 746, 885, 944, 957, 1002
TspGWI	ACGGA	3 cut(s)	216, 1255, 1283
TspRI	CASTG	1 cut(s)	838
VneI	GTGCAC	1 cut(s)	1428
VpaK11BI	GGWCC	2 cut(s)	820, 1360
VspI	ATTAAT	1 cut(s)	662
XceI	RCATGY	1 cut(s)	905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1421
XhoI	CTCGAG	1 cut(s)	1181
XmnI	GAANNNNTTC	2 cut(s)	57, 615
XspI	CTAG	4 cut(s)	369, 1079, 1325, 1457
ZraI	GACGTC	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.