Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7988368.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

209 .. 519

Gene Structure 311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7988368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 311 bp

tggctcctgcgatcagcgatacaccctctaaagacagcaacagaaaagtgggctttgtgagtgctggaatagaatcacagactgatggagggataaaagttgctgcaaatcacgaagacattgaactcccagaagaaagtgattctgaagatgaggcgaatgttgaaattgcacagaaggaggtcccagctgctgtttttggagatttggctaacaagagaaaggattctgaagataatgagggcggagacaaggatggtgagagccgccttggtgctcttgagagaataaagaggctgaagaaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

102

Amino Acids

10.89

Weight (kDa)

4.59

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	245, 267
AcuI	CTGAAG	2 cut(s)	167, 251
AgsI	TTSAA	2 cut(s)	124, 166
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	103, 190
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	90, 177
BccI	CCATC	2 cut(s)	79, 250
BcoDI	GTCTC	1 cut(s)	242
BisI	GCNGC	3 cut(s)	104, 191, 267
BlsI	GCNGC	3 cut(s)	105, 192, 268
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	5, 185
BpiI	GAAGAC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	90, 177
BseYI	CCCAGC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	245, 267
BspLI	GGNNCC	2 cut(s)	5, 185
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	90, 177
BstV2I	GAAGAC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	183
CviJI	RGCY	6 cut(s)	4, 53, 190, 211, 266, 297
CviKI_1	RGCY	6 cut(s)	4, 53, 190, 211, 266, 297
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	167, 251
EcoO109I	RGGNCCY	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaqI	GGGAC	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	104, 191, 267
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	3 cut(s)	104, 191, 267
GluI	GCNGC	3 cut(s)	104, 191, 267
GsaI	CCCAGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	73, 142, 226
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	147, 231
Hpy188III	TCNNGA	2 cut(s)	112, 280
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	106, 172
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	20, 50, 143, 200
Lsp1109I	GCAGC	2 cut(s)	90, 177
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	4 cut(s)	127, 145, 160, 244
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	6 cut(s)	36, 82, 147, 174, 234, 287
MroXI	GAANNNNTTC	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	190
NdeII	GATC	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	5, 185
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	73, 142, 226
PkrI	GCNGC	3 cut(s)	105, 192, 268
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	5, 185
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	190
SatI	GCNGC	3 cut(s)	104, 191, 267
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	2 cut(s)	185, 192
SgeI	CNNG	9 cut(s)	19, 77, 124, 142, 199, 228, 264, 283, 292
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	245, 267
StyI	CCWWGG	1 cut(s)	270
TasI	AATT	1 cut(s)	167
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	73, 142, 226
TseI	GCWGC	2 cut(s)	103, 190
VpaK11BI	GGWCC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.