Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

55862511 .. 55865657

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGCTGCATATACATGGCTATCTCTCAAGAACTCTACCCCTCCCAAGACGACCTCCTCTACGAAGAAGAGCTTCTCCGAAACCCTTACGGTCTCAAGCTGCGGTGGCGTTGCCTTACCGCCCGATTCGACGCGCCCTTCAAGAAGCGCCGCACCATCTACGAGTGCGCCCTCAAGGCCCTTCCGGAAGCTACAAGCTTTGGTACGCCTACCTTCATGAACGTCTAGAGCTCGTCCGCAACTTTTCGATCAACTACTCCGAGTACGAAACCCTAAACAACACCTTCGAGATAGAGGTGAAGCCACGTTGGGGCACGGGCCCCGATCAGATTTTCATTATTTATGTTTTTGGTTTCATGTTTACATTGAAAGTTGTTGTAATGCGAGTGGTAGAGAGCCTGACGGAGCAGAGATTGTCGCCGGAGTTTCGATCGGGCGCTGTGTGCTCTGCCGGTGCAACAGCACGACCGGATTTGGGAGCTGTATTTGGTGTTCGTGAGCCAGAAGGGGATCCCTATCCAGACCTCGCTTCGGGTCCACCGGAGCTGTGGCAAGAGGCGGCGGAGCGGCTGGCCTTGGTGCTTAATGATGATCAGTTTAGGTCGATTAAGGGAAAGACTAAGCATAGGTTGTGGTTGGAGTTGTGTGATTTGCTTACTAAGAATGCCACGGCGGTTTCGGGGTTGAATGTGGATGCTATCATTAGAGGTGGGATTAAGAAGTTTACGGATGAGGTGGGAAGGCTGTGGACGTCGTTGCCGGATTATTATATTAAGAGGGGTTTGTTTGACAAGGCTAGGGATGTGTTTGAGGAGGGGATGCAGACTGTGGTGACTGTGAGGGATTTTAGTGTGATTTTCGATGCGTATGCGCAGTTTGAAGAGAGTATGCTTGCGATTAAGATGGAGGCTTTGGGGAGTGAAGAGGAGGAGGAAGATGTCCGAACCAGTGTAGACTTGTCTGTGGCTGAGCTTGAGAGGAAGATACTCCATTGGTTTTGGCTATATGATGAGAATGATGTTGATTTGAGGTTGGCTCGATTGGACCATCTTATGGATAGAAGACCTGAACTGGCTAATAGTGTTCTTTTGAGACAAAATCCGCATAATGTAGAGCAATGGCACCGGAGAGTGAAGCTGTTTGAGGGGAATCCTACAAAGCAGATACTTACTTACACCCAGGCTGTGAAGACAGTGGGAAAGTCTCATACGTTGTGGGTTGCTTTTGCTAAGCTGTATGAAACACATGGAGATATTGCAAATGCAAGAGTAATTTTTGATAAGGCCGTCCAGGTGAACTACAAGACAGTGGATAATCTGGCTAGTCTATGGTGTGAGTGGGCAGAAATGGAATTGCGGCATAAGAATTTTAGACGCGCCCTGGAACTGATGAGTAGAGCTACAGCAGAGCCGTCTGTTGACGTTAAACGAAGAGTTGCTGCTGATGGGAATCCACCAGTTCAGATGAGGCTCCATAAATCCTTGAGGCTTTGGACATTTTATGTGGACTTGGAGGAGAGCCTGGGTACACTAGAGTCTACTCGGGCAGTGTATGAGAGGATATTGGATTTGAGAATAGCCACACCTCAAATAATAATCAACTATGCATTGCTTCTGGAAGAACATAAATACTTTGAAGATGCATTTAAAGTCTATGAAAAGGGTACTCAAATATTCAAGTACCCGCATGTCAAAGACATATGGATTATATATCTCTCTAAATTTGTAAAAAGATATGGGAAGAATAAGCTAGAACGTGCAAGACTGCTCTTTGAGGATGCTGTTAAAGCGGCTCCTACTGATGCGAAGAAATCATTGTATCTCCAATTTGCAAAGCTGGAGGAGGATTATGGTCTAGCAAACCGGGCTATGAAGGCCTATGATGAAGCAACTAAGGCTGTTCCAAACCATGAAAAGTTGAGCATGTATGAAATCTATATTGCACGTGCAGCTAAGATTTTTGGGATCCCCAAAACAAGGGAGATATATGAGCAAGCAATAGAATCTGGACTCCCTGACAAAGATGTGAAGACAATGTGTCTAATGTATGCTGAGATCGAGAAGAGCTTGGGCGAAATTGATCGTGCTCGGGGAGTTTACGTATTTGCATCTCAGTTTTCAGATCCACGATCGGATGCAGAATTCTGGAACAAATGGCACGAGTTTGAGGTGCAACACGGGAATGAAGATACGTTTAGAGAGATGCTTCGAATCAAACGGAGTGTTTCTGCAAGCTATAGCCAGACGCACTTTATTTTACCCGAGTGTATGATGCAAAAGGATCAGAGGTTGAGCATTGACGAGGCAAAAGACAAATTGAAACAAGCTGGAGTCCTCGAAGATGAAATGGCTGCTCTTGAGAGGCAGTTGGCTCCTGCGATCAGCGATACACCCTCTAAAGACAGCAACAGAAAAGTGGGCTTTGTGAAAGAAAGTGATTCTGAAGATGAGGCAAATGTTGAAATAGCACAAAAGGAGGTCCCAGCTGCTGTTTTTGGAGATTTGGCTAACAAGAGAGAGGATTCTGAAGATAATGAGGGTGGAGACAAGGATGGTGAGAGCCGCCTTGGTGCTCTTGAGAGAATAAAGAGGCTGAAAAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

867

Amino Acids

99.93

Weight (kDa)

6.52

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_M	PF23220	182 - 398	1.1e-77	Pre-mRNA-splicing factor SYF1 middle HAT repeat
Suf	PF05843	369 - 640	3.3e-10	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_C	PF23231	396 - 788	1.8e-187	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_C	PF23241	492 - 558	6.4e-06	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	533 - 631	2.6e-06	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	752
Acc16I	TGCGCA	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	1119
AccB7I	CCANNNNNTGG	1 cut(s)	1051
AccBSI	CCGCTC	1 cut(s)	565
AccI	GTMKAC	2 cut(s)	951, 1535
AccII	CGCG	2 cut(s)	132, 1374
AccIII	TCCGGA	1 cut(s)	182
AclWI	GGATC	6 cut(s)	503, 516, 1957, 1970, 2114, 2286
AcsI	RAATTY	3 cut(s)	1363, 1718, 2138
AcuI	CTGAAG	2 cut(s)	2460, 2544
AcvI	CACGTG	1 cut(s)	1943
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	5 cut(s)	203, 263, 1525, 1663, 1679
AfiI	CCNNNNNNNGG	5 cut(s)	308, 473, 529, 1051, 1974
AgsI	TTSAA	8 cut(s)	140, 367, 685, 878, 1634, 1675, 2317, 2459
AhdI	GACNNNNNGTC	1 cut(s)	2034
AjnI	CCWGG	4 cut(s)	1176, 1287, 1377, 1518
Alw21I	GWGCWC	4 cut(s)	231, 446, 2086, 2572
Alw26I	GTCTC	4 cut(s)	96, 1084, 1206, 2535
AlwI	GGATC	6 cut(s)	503, 516, 1957, 1970, 2114, 2286
AlwNI	CAGNNNCTG	1 cut(s)	2486
Ama87I	CYCGRG	3 cut(s)	1539, 2085, 2258
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	5 cut(s)	175, 316, 570, 1281, 1872
ApaI	GGGCCC	1 cut(s)	320
ApeKI	GCWGC	6 cut(s)	4, 98, 1436, 1946, 2348, 2483
ApoI	RAATTY	3 cut(s)	1363, 1718, 2138
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	6 cut(s)	134, 148, 168, 437, 871, 1376
AspS9I	GGNCC	6 cut(s)	176, 316, 317, 533, 1042, 2476
AsuC2I	CCSGG	1 cut(s)	1862
AsuHPI	GGTGA	4 cut(s)	307, 841, 1303, 2564
AsuII	TTCGAA	1 cut(s)	2206
AvaI	CYCGRG	3 cut(s)	1539, 2085, 2258
AvaII	GGWCC	3 cut(s)	533, 1042, 2476
BaeGI	GKGCMC	2 cut(s)	314, 320
BamHI	GGATCC	2 cut(s)	508, 1962
BanI	GGYRCC	1 cut(s)	1119
BanII	GRGCYC	2 cut(s)	231, 320
BauI	CACGAG	1 cut(s)	2156
BbrPI	CACGTG	1 cut(s)	1943
BbsI	GAAGAC	3 cut(s)	1066, 1193, 2033
Bbv12I	GWGCWC	4 cut(s)	231, 446, 2086, 2572
BbvI	GCAGC	5 cut(s)	85, 1423, 1958, 2335, 2470
BccI	CCATC	5 cut(s)	162, 895, 1053, 1436, 2543
BceAI	ACGGC	3 cut(s)	684, 1268, 1393
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BciT130I	CCWGG	4 cut(s)	1178, 1289, 1379, 1520
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	1862
BcoDI	GTCTC	4 cut(s)	96, 1084, 1206, 2535
BfaI	CTAG	6 cut(s)	224, 795, 1320, 1529, 1748, 1853
BfmI	CTRYAG	2 cut(s)	1398, 2233
BfoI	RGCGCY	2 cut(s)	149, 438
BglI	GCCNNNNNGGC	1 cut(s)	174
BlpI	GCTNAGC	2 cut(s)	966, 1227
Bme1390I	CCNGG	5 cut(s)	1178, 1289, 1379, 1520, 1862
Bme18I	GGWCC	3 cut(s)	533, 1042, 2476
BmeRI	GACNNNNNGTC	1 cut(s)	2034
BmeT110I	CYCGRG	3 cut(s)	1539, 2085, 2258
BmgT120I	GGNCC	6 cut(s)	176, 316, 317, 533, 1042, 2476
BmrFI	CCNGG	5 cut(s)	1178, 1289, 1379, 1520, 1862
BpiI	GAAGAC	3 cut(s)	1066, 1193, 2033
BplI	GAGNNNNNCTC	2 cut(s)	1018, 1050
BpmI	CTGGAG	2 cut(s)	1856, 2346
Bpu1102I	GCTNAGC	2 cut(s)	966, 1227
Bpu14I	TTCGAA	1 cut(s)	2206
BpuEI	CTTGAG	7 cut(s)	10, 78, 156, 992, 1501, 2375, 2594
BpuMI	CCSGG	1 cut(s)	1862
BsaAI	YACGTR	2 cut(s)	1943, 2098
BsaBI	GATNNNNATC	2 cut(s)	513, 1446
BsaHI	GRCGYC	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	6 cut(s)	573, 666, 1176, 1377, 1519, 2563
BsaWI	WCCGGW	4 cut(s)	182, 466, 538, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	2082, 2112
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 473, 529, 1051, 1974
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	945, 1074, 1454
Bse3DI	GCAATG	2 cut(s)	1121, 1604
Bse8I	GATNNNNATC	2 cut(s)	513, 1446
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	1178, 1289, 1379, 1520
BseDI	CCNNGG	6 cut(s)	573, 666, 1176, 1377, 1519, 2563
BseGI	GGATG	7 cut(s)	697, 733, 805, 822, 1780, 2137, 2554
BseJI	GATNNNNATC	2 cut(s)	513, 1446
BseLI	CCNNNNNNNGG	5 cut(s)	308, 473, 529, 1051, 1974
BseMI	GCAATG	2 cut(s)	1121, 1604
BseMII	CTCAG	3 cut(s)	957, 2040, 2123
BseNI	ACTGG	3 cut(s)	945, 1074, 1454
BseRI	GAGGAG	6 cut(s)	45, 824, 938, 941, 1526, 1853
BseSI	GKGCMC	2 cut(s)	314, 320
BseXI	GCAGC	5 cut(s)	85, 1423, 1958, 2335, 2470
BseYI	CCCAGC	1 cut(s)	2479
BsgI	GTGCAG	1 cut(s)	1965
Bsh1236I	CGCG	2 cut(s)	132, 1374
Bsh1285I	CGRYCG	3 cut(s)	431, 467, 2129
BshFI	GGCC	5 cut(s)	177, 318, 572, 1283, 1874
BshNI	GGYRCC	1 cut(s)	1119
BsiEI	CGRYCG	3 cut(s)	431, 467, 2129
BsiHKAI	GWGCWC	4 cut(s)	231, 446, 2086, 2572
BsiHKCI	CYCGRG	3 cut(s)	1539, 2085, 2258
BsiSI	CCGG	8 cut(s)	183, 419, 450, 467, 539, 758, 1123, 1861
BslFI	GGGAC	1 cut(s)	2462
BslI	CCNNNNNNNGG	5 cut(s)	308, 473, 529, 1051, 1974
BsmAI	GTCTC	4 cut(s)	96, 1084, 1206, 2535
BsmFI	GGGAC	1 cut(s)	2462
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	5 cut(s)	177, 318, 572, 1283, 1874
Bso31I	GGTCTC	1 cut(s)	96
BsoBI	CYCGRG	3 cut(s)	1539, 2085, 2258
Bsp119I	TTCGAA	1 cut(s)	2206
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	6 cut(s)	231, 314, 320, 446, 2086, 2572
Bsp13I	TCCGGA	1 cut(s)	182
Bsp1720I	GCTNAGC	2 cut(s)	966, 1227
BspANI	GGCC	5 cut(s)	177, 318, 572, 1283, 1874
BspCNI	CTCAG	3 cut(s)	958, 2041, 2122
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	132, 1374
BspHI	TCATGA	1 cut(s)	214
BspPI	GGATC	6 cut(s)	503, 516, 1957, 1970, 2114, 2286
BspQI	GCTCTTC	2 cut(s)	61, 2054
BspT104I	TTCGAA	1 cut(s)	2206
BspT107I	GGYRCC	1 cut(s)	1119
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	1121, 1604
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	945, 1074, 1454
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	6 cut(s)	573, 666, 1176, 1377, 1519, 2563
BssNI	GRCGYC	1 cut(s)	749
BssSI	CACGAG	1 cut(s)	2156
BssT1I	CCWWGG	2 cut(s)	573, 2563
Bst2BI	CACGAG	1 cut(s)	2156
Bst2UI	CCWGG	4 cut(s)	1178, 1289, 1379, 1520
Bst4CI	ACNGT	5 cut(s)	90, 826, 835, 1192, 1306
Bst6I	CTCTTC	5 cut(s)	61, 873, 915, 1423, 2054
BstACI	GRCGYC	1 cut(s)	749
BstBAI	YACGTR	2 cut(s)	1943, 2098
BstBI	TTCGAA	1 cut(s)	2206
BstC8I	GCNNGC	4 cut(s)	570, 891, 1992, 2230
BstDEI	CTNAG	8 cut(s)	618, 657, 966, 1227, 1890, 1950, 2049, 2109
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	7 cut(s)	697, 733, 805, 822, 1780, 2137, 2554
BstFNI	CGCG	2 cut(s)	132, 1374
BstH2I	RGCGCY	2 cut(s)	149, 438
BstHHI	GCGC	6 cut(s)	134, 148, 168, 437, 871, 1376
BstMAI	GTCTC	4 cut(s)	96, 1084, 1206, 2535
BstMCI	CGRYCG	3 cut(s)	431, 467, 2129
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 174, 441, 1784, 1862, 1871, 1892, 1946
BstNI	CCWGG	4 cut(s)	1178, 1289, 1379, 1520
BstNSI	RCATGY	2 cut(s)	1688, 1924
BstSCI	CCNGG	5 cut(s)	1176, 1287, 1377, 1518, 1860
BstSFI	CTRYAG	2 cut(s)	1398, 2233
BstSLI	GKGCMC	2 cut(s)	314, 320
BstSNI	TACGTA	1 cut(s)	2098
BstUI	CGCG	2 cut(s)	132, 1374
BstV1I	GCAGC	5 cut(s)	85, 1423, 1958, 2335, 2470
BstV2I	GAAGAC	3 cut(s)	1066, 1193, 2033
BstX2I	RGATCY	3 cut(s)	508, 1962, 2119
BstYI	RGATCY	3 cut(s)	508, 1962, 2119
BsuRI	GGCC	5 cut(s)	177, 318, 572, 1283, 1874
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	7 cut(s)	697, 733, 805, 822, 1780, 2137, 2554
BtsI	GCAGTG	1 cut(s)	1551
BtsIMutI	CAGTG	4 cut(s)	952, 1197, 1311, 1551
Cac8I	GCNNGC	4 cut(s)	570, 891, 1992, 2230
CaiI	CAGNNNCTG	1 cut(s)	2486
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	6 cut(s)	134, 148, 168, 437, 871, 1376
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	6 cut(s)	176, 316, 317, 533, 1042, 2476
CseI	GACGC	3 cut(s)	138, 1380, 2251
Csp6I	GTAC	5 cut(s)	202, 262, 1524, 1662, 1678
CviAII	CATG	7 cut(s)	14, 215, 355, 1244, 1685, 1907, 1921
CviQI	GTAC	5 cut(s)	202, 262, 1524, 1662, 1678
DdeI	CTNAG	8 cut(s)	618, 657, 966, 1227, 1890, 1950, 2049, 2109
DraI	TTTAAA	1 cut(s)	1645
DriI	GACNNNNNGTC	1 cut(s)	2034
Eam1104I	CTCTTC	5 cut(s)	61, 873, 915, 1423, 2054
Eam1105I	GACNNNNNGTC	1 cut(s)	2034
EarI	CTCTTC	5 cut(s)	61, 873, 915, 1423, 2054
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	229
Eco105I	TACGTA	1 cut(s)	2098
Eco130I	CCWWGG	2 cut(s)	573, 2563
Eco147I	AGGCCT	1 cut(s)	1874
Eco24I	GRGCYC	2 cut(s)	231, 320
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	533, 1042, 2476
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	2460, 2544
Eco72I	CACGTG	1 cut(s)	1943
Eco88I	CYCGRG	3 cut(s)	1539, 2085, 2258
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	3 cut(s)	176, 317, 2476
EcoRI	GAATTC	1 cut(s)	2138
EcoRII	CCWGG	4 cut(s)	1176, 1287, 1377, 1518
EcoT14I	CCWWGG	2 cut(s)	573, 2563
EcoT22I	ATGCAT	2 cut(s)	1606, 1642
EcoT38I	GRGCYC	2 cut(s)	231, 320
ErhI	CCWWGG	2 cut(s)	573, 2563
FaeI	CATG	7 cut(s)	17, 218, 358, 1247, 1688, 1910, 1924
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	2462
FatI	CATG	7 cut(s)	13, 214, 354, 1243, 1684, 1906, 1920
FauI	CCCGC	1 cut(s)	1689
FauNDI	CATATG	1 cut(s)	1697
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	951, 1535
FokI	GGATG	7 cut(s)	704, 740, 812, 829, 1787, 2144, 2561
FriOI	GRGCYC	2 cut(s)	231, 320
FspBI	CTAG	6 cut(s)	224, 795, 1320, 1529, 1748, 1853
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	6 cut(s)	133, 147, 167, 436, 870, 1375
GsaI	CCCAGC	1 cut(s)	2483
GsuI	CTGGAG	2 cut(s)	1856, 2346
HaeII	RGCGCY	2 cut(s)	149, 438
HaeIII	GGCC	5 cut(s)	177, 318, 572, 1283, 1874
HapII	CCGG	8 cut(s)	183, 419, 450, 467, 539, 758, 1123, 1861
HgaI	GACGC	3 cut(s)	138, 1380, 2251
HhaI	GCGC	6 cut(s)	134, 148, 168, 437, 871, 1376
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	7 cut(s)	17, 218, 358, 1247, 1688, 1910, 1924
Hin6I	GCGC	6 cut(s)	132, 146, 166, 435, 869, 1374
HinP1I	GCGC	6 cut(s)	132, 146, 166, 435, 869, 1374
HincII	GTYRAC	1 cut(s)	1417
HindII	GTYRAC	1 cut(s)	1417
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	8 cut(s)	183, 419, 450, 467, 539, 758, 1123, 1861
HphI	GGTGA	4 cut(s)	307, 841, 1303, 2564
Hpy99I	CGWCG	2 cut(s)	132, 754
HpyAV	CCTTC	7 cut(s)	146, 189, 221, 292, 497, 732, 1864
HpyCH4III	ACNGT	5 cut(s)	90, 826, 835, 1192, 1306
HpyCH4IV	ACGT	9 cut(s)	220, 304, 749, 1208, 1419, 1753, 1942, 2097, 2189
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 174, 441, 1784, 1862, 1871, 1892, 1946
HpyF3I	CTNAG	8 cut(s)	618, 657, 966, 1227, 1890, 1950, 2049, 2109
HpySE526I	ACGT	9 cut(s)	220, 304, 749, 1208, 1419, 1753, 1942, 2097, 2189
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	7 cut(s)	17, 218, 358, 1247, 1688, 1910, 1924
HspAI	GCGC	6 cut(s)	132, 146, 166, 435, 869, 1374
Kpn2I	TCCGGA	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	589
LguI	GCTCTTC	2 cut(s)	61, 2054
LmnI	GCTCC	7 cut(s)	403, 476, 541, 562, 1473, 1795, 2374
Lsp1109I	GCAGC	5 cut(s)	85, 1423, 1958, 2335, 2470
MaeI	CTAG	6 cut(s)	224, 795, 1320, 1529, 1748, 1853
MaeII	ACGT	9 cut(s)	220, 304, 749, 1208, 1419, 1753, 1942, 2097, 2189
MaeIII	GTNAC	1 cut(s)	829
MbiI	CCGCTC	1 cut(s)	565
MflI	RGATCY	3 cut(s)	508, 1962, 2119
MhlI	GDGCHC	6 cut(s)	231, 314, 320, 446, 2086, 2572
MluCI	AATT	8 cut(s)	1269, 1349, 1363, 1718, 1823, 2073, 2138, 2312
MlyI	GAGTC	3 cut(s)	1541, 2001, 2337
MmeI	TCCRAC	1 cut(s)	615
Mph1103I	ATGCAT	2 cut(s)	1606, 1642
MroI	TCCGGA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	8 cut(s)	582, 606, 714, 771, 897, 1422, 1644, 1782
MslI	CAYNNNNRTG	2 cut(s)	12, 2178
MspA1I	CMGCKG	1 cut(s)	2483
MspI	CCGG	8 cut(s)	183, 419, 450, 467, 539, 758, 1123, 1861
MspR9I	CCNGG	5 cut(s)	1178, 1289, 1379, 1520, 1862
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	4 cut(s)	1178, 1289, 1379, 1520
MvnI	CGCG	2 cut(s)	132, 1374
MwoI	GCNNNNNNNGC	8 cut(s)	104, 174, 441, 1784, 1862, 1871, 1892, 1946
NciI	CCSGG	1 cut(s)	1862
NdeI	CATATG	1 cut(s)	1697
NlaIII	CATG	7 cut(s)	17, 218, 358, 1247, 1688, 1910, 1924
NmuCI	GTSAC	1 cut(s)	829
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	1606, 1642
NspI	RCATGY	2 cut(s)	1688, 1924
NspV	TTCGAA	1 cut(s)	2206
PagI	TCATGA	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	1874
PciSI	GCTCTTC	2 cut(s)	61, 2054
PctI	GAATGC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	7 cut(s)	124, 1147, 1447, 2000, 2208, 2435, 2519
PflMI	CCANNNNNTGG	1 cut(s)	1051
Ple19I	CGATCG	2 cut(s)	431, 2129
PleI	GAGTC	3 cut(s)	1540, 2001, 2336
PmaCI	CACGTG	1 cut(s)	1943
PmlI	CACGTG	1 cut(s)	1943
PpsI	GAGTC	3 cut(s)	1540, 2001, 2336
Ppu21I	YACGTR	2 cut(s)	1943, 2098
PpuMI	RGGWCCY	1 cut(s)	2476
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	2476
Psp6I	CCWGG	4 cut(s)	1176, 1287, 1377, 1518
PspCI	CACGTG	1 cut(s)	1943
PspFI	CCCAGC	1 cut(s)	2479
PspGI	CCWGG	4 cut(s)	1176, 1287, 1377, 1518
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	6 cut(s)	176, 316, 317, 533, 1042, 2476
PspPPI	RGGWCCY	1 cut(s)	2476
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstNI	CAGNNNCTG	1 cut(s)	2486
PsuI	RGATCY	3 cut(s)	508, 1962, 2119
PvuI	CGATCG	2 cut(s)	431, 2129
PvuII	CAGCTG	1 cut(s)	2483
RsaI	GTAC	5 cut(s)	203, 263, 1525, 1663, 1679
RsaNI	GTAC	5 cut(s)	202, 262, 1524, 1662, 1678
RseI	CAYNNNNRTG	2 cut(s)	12, 2178
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	2 cut(s)	61, 2054
SaqAI	TTAA	8 cut(s)	582, 606, 714, 771, 897, 1422, 1644, 1782
Sau96I	GGNCC	6 cut(s)	176, 316, 317, 533, 1042, 2476
SchI	GAGTC	3 cut(s)	1541, 2001, 2337
ScrFI	CCNGG	5 cut(s)	1178, 1289, 1379, 1520, 1862
SduI	GDGCHC	6 cut(s)	231, 314, 320, 446, 2086, 2572
SfcI	CTRYAG	2 cut(s)	1398, 2233
SfuI	TTCGAA	1 cut(s)	2206
SinI	GGWCC	3 cut(s)	533, 1042, 2476
SmiMI	CAYNNNNRTG	2 cut(s)	12, 2178
SmlI	CTYRAG	7 cut(s)	25, 93, 171, 971, 1480, 2354, 2573
SmoI	CTYRAG	7 cut(s)	25, 93, 171, 971, 1480, 2354, 2573
SnaBI	TACGTA	1 cut(s)	2098
Sse9I	AATT	8 cut(s)	1269, 1349, 1363, 1718, 1823, 2073, 2138, 2312
SseBI	AGGCCT	1 cut(s)	1874
SspI	AATATT	1 cut(s)	1671
SspMI	CTAG	6 cut(s)	224, 795, 1320, 1529, 1748, 1853
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	1874
StyD4I	CCNGG	5 cut(s)	1176, 1287, 1377, 1518, 1860
StyI	CCWWGG	2 cut(s)	573, 2563
TaaI	ACNGT	5 cut(s)	90, 826, 835, 1192, 1306
TaiI	ACGT	9 cut(s)	223, 307, 752, 1211, 1422, 1756, 1945, 2100, 2192
TasI	AATT	8 cut(s)	1269, 1349, 1363, 1718, 1823, 2073, 2138, 2312
TauI	GCSGC	6 cut(s)	151, 560, 568, 1357, 1790, 2562
TfiI	GAWTC	7 cut(s)	124, 1147, 1447, 2000, 2208, 2435, 2519
Tru1I	TTAA	8 cut(s)	582, 606, 714, 771, 897, 1422, 1644, 1782
Tru9I	TTAA	8 cut(s)	582, 606, 714, 771, 897, 1422, 1644, 1782
TscAI	CASTG	4 cut(s)	952, 1197, 1311, 1551
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	6 cut(s)	4, 98, 1436, 1946, 2348, 2483
Tsp45I	GTSAC	1 cut(s)	829
TspGWI	ACGGA	3 cut(s)	416, 740, 2230
TspRI	CASTG	4 cut(s)	952, 1197, 1311, 1551
Van91I	CCANNNNNTGG	1 cut(s)	1051
VpaK11BI	GGWCC	3 cut(s)	533, 1042, 2476
XapI	RAATTY	3 cut(s)	1363, 1718, 2138
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	2 cut(s)	1688, 1924
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmiI	GTMKAC	2 cut(s)	951, 1535
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	6 cut(s)	224, 795, 1320, 1529, 1748, 1853
ZraI	GACGTC	1 cut(s)	750
Zsp2I	ATGCAT	2 cut(s)	1606, 1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.