Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257165.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

236 .. 801

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

atggctatctctcaagaactctacccctcccaagacgacctcctctacgaagaagagcttctccgaaacccttacagcctcaagctctggtggcgctacctaatcgcccgatccgacgcgcccttcaagaagcgccgcaccatctacgagcgcgccgtcaaggccctccccggaagctacaagctctggtacgcctacctccgcgagcgcctcgagctcgtccgcaactttccgatcaaccactccgagtacgaaaccctaaacaacaccttcgagagggcgttggtcacaatgcacaagatgccgcggatttggattctgtatttacagagcctgacggagcagagattggtcaccaggactcgccggagttttgaccgggcgctgtgtgctcttccggtgcagcagcacgaccggatttgggagctgtatttggtgttcgtgagccagaaggggatccctatccagacctcgcttcgggtctaccggaggtacttgctttatgacccgactcatgttgaggattttattgcgtttttgatagagtctgagctgtggcaagaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

189

Amino Acids

23.05

Weight (kDa)

9.11

Isoelectric Point (pI)

67.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	4 cut(s)	119, 153, 204, 307
AciI	CCGC	5 cut(s)	136, 202, 223, 305, 307
AclWI	GGATC	3 cut(s)	105, 451, 464
AfaI	GTAC	3 cut(s)	191, 251, 494
AfiI	CCNNNNNNNGG	3 cut(s)	276, 421, 477
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	7 cut(s)	58, 85, 177, 184, 217, 427, 553
AluI	AGCT	7 cut(s)	58, 85, 177, 184, 217, 427, 553
Alw21I	GWGCWC	2 cut(s)	219, 394
AlwI	GGATC	3 cut(s)	105, 451, 464
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	403, 406
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	7 cut(s)	96, 121, 135, 153, 155, 210, 385
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	171, 380
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	219, 394
BbvI	GCAGC	2 cut(s)	415, 418
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	171, 380
BfoI	RGCGCY	4 cut(s)	97, 136, 211, 386
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	4 cut(s)	136, 305, 404, 407
BlsI	GCNGC	4 cut(s)	137, 306, 405, 408
Bme1390I	CCNGG	3 cut(s)	171, 358, 380
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	3 cut(s)	171, 358, 380
BmsI	GCATC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	171, 380
BsaBI	GATNNNNATC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	169, 305
BsaWI	WCCGGW	3 cut(s)	397, 414, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 421, 477
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	169, 305
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	276, 421, 477
BseMII	CTCAG	1 cut(s)	540
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	415, 418
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	4 cut(s)	119, 153, 204, 307
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	219, 394
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	6 cut(s)	171, 367, 379, 398, 415, 487
BslI	CCNNNNNNNGG	3 cut(s)	276, 421, 477
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	219, 394
Bsp143I	GATC	3 cut(s)	110, 234, 456
BspACI	CCGC	5 cut(s)	136, 202, 223, 305, 307
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	4 cut(s)	119, 153, 204, 307
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	105, 451, 464
BspQI	GCTCTTC	2 cut(s)	48, 399
BssECI	CCNNGG	2 cut(s)	169, 305
BssHII	GCGCGC	1 cut(s)	151
BssMI	GATC	3 cut(s)	110, 234, 456
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	48, 399
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	153, 206
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	1 cut(s)	305
BstEII	GGTNACC	1 cut(s)	352
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstFNI	CGCG	4 cut(s)	119, 153, 204, 307
BstH2I	RGCGCY	4 cut(s)	97, 136, 211, 386
BstHHI	GCGC	7 cut(s)	96, 121, 135, 153, 155, 210, 385
BstKTI	GATC	3 cut(s)	113, 237, 459
BstMBI	GATC	3 cut(s)	110, 234, 456
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 161, 214, 301, 389
BstNI	CCWGG	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	169, 356, 378
BstUI	CGCG	4 cut(s)	119, 153, 204, 307
BstV1I	GCAGC	2 cut(s)	415, 418
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	153, 206
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	7 cut(s)	96, 121, 135, 153, 155, 210, 385
Cfr13I	GGNCC	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	308
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	190, 250, 493
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	3 cut(s)	190, 250, 493
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	3 cut(s)	112, 236, 458
DpnII	GATC	3 cut(s)	110, 234, 456
Eam1104I	CTCTTC	2 cut(s)	48, 399
EarI	CTCTTC	2 cut(s)	48, 399
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	518
FaiI	YATR	2 cut(s)	504, 516
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	136, 305, 404, 407
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	136, 305, 404, 407
GlaI	GCGC	7 cut(s)	95, 120, 134, 152, 154, 209, 384
GluI	GCNGC	4 cut(s)	136, 305, 404, 407
HaeII	RGCGCY	4 cut(s)	97, 136, 211, 386
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	6 cut(s)	171, 367, 379, 398, 415, 487
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	7 cut(s)	96, 121, 135, 153, 155, 210, 385
Hin1II	CATG	1 cut(s)	518
Hin6I	GCGC	7 cut(s)	94, 119, 133, 151, 153, 208, 383
HinP1I	GCGC	7 cut(s)	94, 119, 133, 151, 153, 208, 383
HinfI	GANTC	4 cut(s)	316, 361, 511, 545
HpaII	CCGG	6 cut(s)	171, 367, 379, 398, 415, 487
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	5 cut(s)	65, 115, 234, 247, 550
Hpy188III	TCNNGA	5 cut(s)	14, 127, 274, 442, 466
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	133, 280, 445
HpyCH4V	TGCA	2 cut(s)	295, 403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 161, 214, 301, 389
HpyF3I	CTNAG	1 cut(s)	549
Hsp92II	CATG	1 cut(s)	518
HspAI	GCGC	7 cut(s)	94, 119, 133, 151, 153, 208, 383
KspI	CCGCGG	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	110, 234, 456
LguI	GCTCTTC	2 cut(s)	48, 399
LmnI	GCTCC	2 cut(s)	340, 424
Lsp1109I	GCAGC	2 cut(s)	415, 418
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	286, 352
MalI	GATC	3 cut(s)	112, 236, 458
MboI	GATC	3 cut(s)	110, 234, 456
MboII	GAAGA	3 cut(s)	62, 65, 386
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	219, 394
MlyI	GAGTC	3 cut(s)	355, 505, 554
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	6 cut(s)	171, 367, 379, 398, 415, 487
MspR9I	CCNGG	3 cut(s)	171, 358, 380
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	4 cut(s)	119, 153, 204, 307
MwoI	GCNNNNNNNGC	5 cut(s)	91, 161, 214, 301, 389
NciI	CCSGG	2 cut(s)	171, 380
NdeII	GATC	3 cut(s)	110, 234, 456
NlaIII	CATG	1 cut(s)	518
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	2 cut(s)	286, 352
PaeR7I	CTCGAG	1 cut(s)	212
PauI	GCGCGC	1 cut(s)	151
PciSI	GCTCTTC	2 cut(s)	48, 399
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 153
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	137, 306, 405, 408
PleI	GAGTC	3 cut(s)	355, 505, 553
PpsI	GAGTC	3 cut(s)	355, 505, 553
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	456
PteI	GCGCGC	1 cut(s)	151
RsaI	GTAC	3 cut(s)	191, 251, 494
RsaNI	GTAC	3 cut(s)	190, 250, 493
SacI	GAGCTC	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	308
SapI	GCTCTTC	2 cut(s)	48, 399
SatI	GCNGC	4 cut(s)	136, 305, 404, 407
Sau3AI	GATC	3 cut(s)	110, 234, 456
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	3 cut(s)	355, 505, 554
ScrFI	CCNGG	3 cut(s)	171, 358, 380
SduI	GDGCHC	2 cut(s)	219, 394
SfaNI	GCATC	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	212
Sfr303I	CCGCGG	1 cut(s)	308
SgrBI	CCGCGG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	12, 80, 212
SmoI	CTYRAG	3 cut(s)	12, 80, 212
SsiI	CCGC	5 cut(s)	136, 202, 223, 305, 307
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	169, 356, 378
TaqI	TCGA	2 cut(s)	213, 273
TauI	GCSGC	2 cut(s)	138, 307
TfiI	GAWTC	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	286, 352
TseI	GCWGC	2 cut(s)	403, 406
Tsp45I	GTSAC	2 cut(s)	286, 352
TspGWI	ACGGA	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.