Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

90398382 .. 90400705

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTTTGCTTCATGGCTTCAAGGCTTGCACAATGGAAGAGGCCAAAACTTTGAGAGAGAGAGAGAAGGGTGGATTTACGAAATTGATTCTGGGTTTTGATGATGAAAAAACGTCTACACCTCCCTCTATTTATAGTGGACGACAAGGACTAGTGTTAAGAACATCTTGCAAAAGAATTTCTCAAGTGCCCTGTAATGGGCTGGAGGATTATGGTCTAGCAAAGCGGGCTCGAAGGTCTATGATGAAGCCGAGCATGTCCAAACCCGAAACGTTGAGCATGTATAAAATCTATATTGCCCGTGCAGCTAAGATATTTGGGATCCCCAAAACAAGGGAGATATATGAGCAAGCAATAGAATCTGGTCTCCTTGACAAAGATGTGAAGACAATGTGTCTAAAGTATGCTGAACTCAAGAAGAGCTTGGGTGAAATTGATCGTGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

149

Amino Acids

16.86

Weight (kDa)

9.62

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_C	PF23231	68 - 149	2.9e-26	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	1 cut(s)	226
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	2 cut(s)	316, 329
AcsI	RAATTY	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	197, 198, 333
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	393
AhlI	ACTAGT	1 cut(s)	151
AluBI	AGCT	2 cut(s)	308, 423
AluI	AGCT	2 cut(s)	308, 423
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	316, 329
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	2 cut(s)	152, 218
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	168, 398
BsaI	GGTCTC	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 198, 333
BseLI	CCNNNNNNNGG	3 cut(s)	197, 198, 333
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	197, 198, 333
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	192, 232, 445
Bsp143I	GATC	2 cut(s)	321, 436
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	316, 329
BspQI	GCTCTTC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	371
BssMI	GATC	2 cut(s)	321, 436
Bst6I	CTCTTC	2 cut(s)	33, 413
BstC8I	GCNNGC	3 cut(s)	28, 228, 351
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	324, 439
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	321, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 305
BstNSI	RCATGY	2 cut(s)	259, 283
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	28, 228, 351
CviAII	CATG	3 cut(s)	14, 256, 280
CviJI	RGCY	8 cut(s)	18, 26, 44, 202, 230, 250, 308, 423
CviKI_1	RGCY	8 cut(s)	18, 26, 44, 202, 230, 250, 308, 423
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	323, 438
DpnII	GATC	2 cut(s)	321, 436
DriI	GACNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	33, 413
Eam1105I	GACNNNNNGTC	1 cut(s)	393
EarI	CTCTTC	2 cut(s)	33, 413
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	3 cut(s)	17, 259, 283
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 407, 439
FatI	CATG	3 cut(s)	13, 255, 279
FauI	CCCGC	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	152, 218
GluI	GCNGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	17, 259, 283
HinfI	GANTC	2 cut(s)	88, 359
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	117, 140
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	2 cut(s)	117, 140
HpyAV	CCTTC	2 cut(s)	61, 228
HpyCH4IV	ACGT	2 cut(s)	113, 272
HpyCH4V	TGCA	3 cut(s)	30, 171, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 305
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	113, 272
Hsp92II	CATG	3 cut(s)	17, 259, 283
Kzo9I	GATC	2 cut(s)	321, 436
LguI	GCTCTTC	1 cut(s)	413
LpnPI	CCDG	4 cut(s)	77, 188, 205, 348
Lsp1109I	GCAGC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	152, 218
MaeII	ACGT	2 cut(s)	113, 272
MalI	GATC	2 cut(s)	323, 438
MboI	GATC	2 cut(s)	321, 436
MboII	GAAGA	3 cut(s)	50, 397, 430
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	3 cut(s)	192, 232, 445
MluCI	AATT	3 cut(s)	83, 177, 432
MnlI	CCTC	4 cut(s)	34, 132, 136, 199
MseI	TTAA	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	227, 305
NdeII	GATC	2 cut(s)	321, 436
NlaIII	CATG	3 cut(s)	17, 259, 283
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	276
NspI	RCATGY	2 cut(s)	259, 283
PciSI	GCTCTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	88, 359
PkrI	GCNGC	1 cut(s)	307
Psp1406I	AACGTT	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	321, 436
SduI	GDGCHC	3 cut(s)	192, 232, 445
SetI	ASST	6 cut(s)	116, 124, 239, 275, 310, 425
SmlI	CTYRAG	2 cut(s)	183, 413
SmoI	CTYRAG	2 cut(s)	183, 413
SpeI	ACTAGT	1 cut(s)	151
Sse9I	AATT	3 cut(s)	83, 177, 432
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	152, 218
TaiI	ACGT	2 cut(s)	116, 275
TaqI	TCGA	2 cut(s)	232, 445
TasI	AATT	3 cut(s)	83, 177, 432
TfiI	GAWTC	2 cut(s)	88, 359
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	120, 260
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	2 cut(s)	259, 283
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	2 cut(s)	152, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.