Rmu_sc0009371.1_g000007

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009371.1
Physical Location & Seq
Forward (+)
31719 .. 33820
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009371.1_g000007.1.cds

Sequence Viewer

Length: 1143 bp
atgtcgatctttcaagacctatacccctcacaagacgaccttctctacgaagaagagcttctccgaaacccctatagcctcaagctatggtggcgctacctgattgcccgatccgacagccagacggagcagaaattggtcaccaggactcgcctgactttcgacagagcgctgcctgctcttcccgtgcagctgcacgaccgcgtttgggagctctaccttgccttcgttagtcagaagggtatcccaatcgagacctcgcttagggtttaccggaggtacttgcagtttgaccctacttacgtggaagactacattaatttcttgatcgattctactctttggcaagaggcggcggagaagctcgcctcggtgttgaatgatgatgagttttgttcagtaaaggggaaaactaagcagacgctgtggttggaatattgtggtttgcttgctaggcacggtaccaaggtctcgggcatcaatgtggatgctatcattgttaagacatttaaagacgaggtggggagtctgtggacgtcgctggctgactattacattaaaaggagcttatttgagaaggctattgatgtgtttgaggaggctatgcaaagtgtgtttgcaaagttggaggaggattatggtttagcaaagcgcgctatgaagcggagaggctgcttggtgtccccaagacaaggaaagatatatgtgcaaacaatagaatctggtcttccacacaaggatgttaagacaatgtgtttgaagtatgccgagctagagaagagcttggctgaaattgatcgtgctcggagagtatatgtatatggatcacagttttcacatccacaatatgatgcggatttctggaacaaatggctcgagtttgaggtgcaatacggcaatgaggatacttgccgagatatgcttcgaatcaaacggagttcagtgctagttgtcatgaagacatgcattgaactagcggaagaagaaactgatttcgaagatgagaagatggttgaggttgcaccaaaggaggtcccgttggctgtttttggacatttcgctaacaagcctgaagatgattctccccagagccgctttggtgcacttgagaggatacagaggcgaagactagcagtagtctga

Protein Analysis

380

Amino Acids

44.44

Weight (kDa)

5.54

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 539
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AccII CGCG 2 cut(s) 204, 654
AciI CCGC 7 cut(s) 202, 353, 356, 664, 854, 977, 1093
AclWI GGATC 2 cut(s) 105, 832
AcuI CTGAAG 1 cut(s) 1092
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 281, 463
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 3 cut(s) 208, 264, 692
AgsI TTSAA 4 cut(s) 14, 379, 760, 971
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 8 cut(s) 58, 85, 193, 214, 364, 567, 772, 783
AluI AGCT 8 cut(s) 58, 85, 193, 214, 364, 567, 772, 783
Alw21I GWGCWC 3 cut(s) 216, 805, 1105
Alw26I GTCTC 2 cut(s) 248, 475
Alw44I GTGCAC 1 cut(s) 1101
AlwI GGATC 2 cut(s) 105, 832
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 2 cut(s) 472, 875
Aor51HI AGCGCT 1 cut(s) 171
ApaLI GTGCAC 1 cut(s) 1101
ApeKI GCWGC 4 cut(s) 172, 190, 193, 672
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 57
Asp718I GGTACC 1 cut(s) 461
AspLEI GCGC 4 cut(s) 96, 172, 654, 656
AspS9I GGNCC 1 cut(s) 1033
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 2 cut(s) 925, 996
AvaI CYCGRG 2 cut(s) 472, 875
AvaII GGWCC 1 cut(s) 1033
BaeGI GKGCMC 1 cut(s) 1105
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 4 cut(s) 315, 719, 965, 1132
Bbv12I GWGCWC 3 cut(s) 216, 805, 1105
BbvI GCAGC 4 cut(s) 159, 180, 202, 659
BccI CCATC 1 cut(s) 1003
BceAI ACGGC 1 cut(s) 910
BciT130I CCWGG 1 cut(s) 145
BciVI GTATCC 3 cut(s) 254, 898, 1107
BcoDI GTCTC 2 cut(s) 248, 475
BfaI CTAG 5 cut(s) 453, 773, 947, 974, 1130
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 2 cut(s) 97, 173
BfuI GTATCC 3 cut(s) 254, 898, 1107
BisI GCNGC 6 cut(s) 173, 191, 194, 354, 673, 1093
BlsI GCNGC 6 cut(s) 174, 192, 195, 355, 674, 1094
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 1033
BmeT110I CYCGRG 2 cut(s) 472, 875
BmgT120I GGNCC 1 cut(s) 1033
BmiI GGNNCC 2 cut(s) 463, 1035
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 478, 486, 841
BpiI GAAGAC 4 cut(s) 315, 719, 965, 1132
Bpu10I CCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 2 cut(s) 925, 996
BpuEI CTTGAG 2 cut(s) 65, 1127
Bsa29I ATCGAT 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 2 cut(s) 248, 475
BsaJI CCNNGG 2 cut(s) 369, 465
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 264, 692
Bse3DI GCAATG 1 cut(s) 904
BseBI CCWGG 1 cut(s) 145
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 369, 465
BseGI GGATG 3 cut(s) 493, 745, 838
BseLI CCNNNNNNNGG 3 cut(s) 208, 264, 692
BseMI GCAATG 1 cut(s) 904
BsePI GCGCGC 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 611, 644
BseSI GKGCMC 1 cut(s) 1105
BseXI GCAGC 4 cut(s) 159, 180, 202, 659
BsgI GTGCAG 2 cut(s) 179, 209
Bsh1236I CGCG 2 cut(s) 204, 654
Bsh1285I CGRYCG 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 3 cut(s) 216, 805, 1105
BsiHKCI CYCGRG 2 cut(s) 472, 875
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 2 cut(s) 667, 1019
BslI CCNNNNNNNGG 3 cut(s) 208, 264, 692
BsmAI GTCTC 2 cut(s) 248, 475
BsmFI GGGAC 2 cut(s) 667, 1019
Bso31I GGTCTC 2 cut(s) 248, 475
BsoBI CYCGRG 2 cut(s) 472, 875
Bsp119I TTCGAA 2 cut(s) 925, 996
Bsp1286I GDGCHC 3 cut(s) 216, 805, 1105
Bsp143I GATC 5 cut(s) 6, 110, 327, 796, 824
BspACI CCGC 7 cut(s) 202, 353, 356, 664, 854, 977, 1093
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 2 cut(s) 204, 654
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 2 cut(s) 463, 1035
BspPI GGATC 2 cut(s) 105, 832
BspQI GCTCTTC 3 cut(s) 48, 186, 773
BspT104I TTCGAA 2 cut(s) 925, 996
BspT107I GGYRCC 1 cut(s) 461
BspTNI GGTCTC 2 cut(s) 248, 475
BsrDI GCAATG 1 cut(s) 904
BssECI CCNNGG 2 cut(s) 369, 465
BssHII GCGCGC 1 cut(s) 652
BssMI GATC 5 cut(s) 6, 110, 327, 796, 824
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 461, 831
Bst6I CTCTTC 3 cut(s) 48, 186, 773
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 2 cut(s) 925, 996
BstC8I GCNNGC 5 cut(s) 177, 366, 450, 543, 654
BstDEI CTNAG 2 cut(s) 263, 414
BstEII GGTNACC 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 3 cut(s) 493, 745, 838
BstFNI CGCG 2 cut(s) 204, 654
BstH2I RGCGCY 2 cut(s) 97, 173
BstHHI GCGC 4 cut(s) 96, 172, 654, 656
BstKTI GATC 5 cut(s) 9, 113, 330, 799, 827
BstMAI GTCTC 2 cut(s) 248, 475
BstMBI GATC 5 cut(s) 6, 110, 327, 796, 824
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 4 cut(s) 91, 176, 454, 653
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 966
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 1105
BstUI CGCG 2 cut(s) 204, 654
BstV1I GCAGC 4 cut(s) 159, 180, 202, 659
BstV2I GAAGAC 4 cut(s) 315, 719, 965, 1132
Bsu15I ATCGAT 1 cut(s) 330
BsuI GTATCC 3 cut(s) 254, 898, 1107
BsuTUI ATCGAT 1 cut(s) 330
BtsCI GGATG 3 cut(s) 493, 745, 838
BtsIMutI CAGTG 1 cut(s) 948
Cac8I GCNNGC 5 cut(s) 177, 366, 450, 543, 654
CaiI CAGNNNCTG 1 cut(s) 424
CciI TCATGA 1 cut(s) 954
CfoI GCGC 4 cut(s) 96, 172, 654, 656
Cfr13I GGNCC 1 cut(s) 1033
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 280, 462
CviAII CATG 2 cut(s) 955, 963
CviQI GTAC 2 cut(s) 280, 462
DdeI CTNAG 2 cut(s) 263, 414
DpnI GATC 5 cut(s) 8, 112, 329, 798, 826
DpnII GATC 5 cut(s) 6, 110, 327, 796, 824
DraI TTTAAA 1 cut(s) 511
Eam1104I CTCTTC 3 cut(s) 48, 186, 773
EarI CTCTTC 3 cut(s) 48, 186, 773
EciI GGCGGA 1 cut(s) 371
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 2 cut(s) 248, 475
Eco47I GGWCC 1 cut(s) 1033
Eco47III AGCGCT 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 1092
Eco88I CYCGRG 2 cut(s) 472, 875
Eco91I GGTNACC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 1033
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 968
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 958, 966
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 42, 74
FaqI GGGAC 2 cut(s) 667, 1019
FatI CATG 2 cut(s) 954, 962
Fnu4HI GCNGC 6 cut(s) 173, 191, 194, 354, 673, 1093
FokI GGATG 3 cut(s) 500, 752, 825
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 6 cut(s) 173, 191, 194, 354, 673, 1093
FspBI CTAG 5 cut(s) 453, 773, 947, 974, 1130
GlaI GCGC 4 cut(s) 95, 171, 653, 655
GluI GCNGC 6 cut(s) 173, 191, 194, 354, 673, 1093
HaeII RGCGCY 2 cut(s) 97, 173
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 430
HhaI GCGC 4 cut(s) 96, 172, 654, 656
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 2 cut(s) 958, 966
Hin6I GCGC 4 cut(s) 94, 170, 652, 654
HinP1I GCGC 4 cut(s) 94, 170, 652, 654
HinfI GANTC 6 cut(s) 148, 332, 526, 719, 927, 1079
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 271, 534, 1103
Hpy188I TCNGA 5 cut(s) 65, 115, 237, 807, 1142
Hpy188III TCNNGA 5 cut(s) 14, 253, 325, 862, 955
Hpy8I GTNNAC 3 cut(s) 271, 534, 1103
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 4 cut(s) 50, 232, 235, 571
HpyCH4III ACNGT 2 cut(s) 461, 831
HpyCH4IV ACGT 2 cut(s) 303, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 176, 454, 653
HpyF3I CTNAG 2 cut(s) 263, 414
HpySE526I ACGT 2 cut(s) 303, 536
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 2 cut(s) 958, 966
HspAI GCGC 4 cut(s) 94, 170, 652, 654
KpnI GGTACC 1 cut(s) 465
Kzo9I GATC 5 cut(s) 6, 110, 327, 796, 824
LguI GCTCTTC 3 cut(s) 48, 186, 773
LmnI GCTCC 3 cut(s) 127, 211, 564
Lsp1109I GCAGC 4 cut(s) 159, 180, 202, 659
LweI GCATC 3 cut(s) 478, 486, 841
MaeI CTAG 5 cut(s) 453, 773, 947, 974, 1130
MaeII ACGT 2 cut(s) 303, 536
MaeIII GTNAC 1 cut(s) 139
MalI GATC 5 cut(s) 8, 112, 329, 798, 826
MboI GATC 5 cut(s) 6, 110, 327, 796, 824
MhlI GDGCHC 3 cut(s) 216, 805, 1105
MluCI AATT 3 cut(s) 134, 319, 792
MlyI GAGTC 2 cut(s) 142, 535
MmeI TCCRAC 3 cut(s) 138, 411, 606
Mph1103I ATGCAT 1 cut(s) 968
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 5 cut(s) 318, 501, 510, 558, 744
MslI CAYNNNNRTG 2 cut(s) 482, 738
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 2 cut(s) 204, 654
MwoI GCNNNNNNNGC 4 cut(s) 91, 176, 454, 653
NdeII GATC 5 cut(s) 6, 110, 327, 796, 824
NlaIII CATG 2 cut(s) 958, 966
NlaIV GGNNCC 2 cut(s) 463, 1035
NmeAIII GCCGAG 2 cut(s) 793, 938
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 968
NspI RCATGY 1 cut(s) 966
NspV TTCGAA 2 cut(s) 925, 996
PaeR7I CTCGAG 1 cut(s) 875
PagI TCATGA 1 cut(s) 954
PauI GCGCGC 1 cut(s) 652
PciSI GCTCTTC 3 cut(s) 48, 186, 773
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 332, 719, 927, 1079
PkrI GCNGC 6 cut(s) 174, 192, 195, 355, 674, 1094
PleI GAGTC 2 cut(s) 142, 534
PpsI GAGTC 2 cut(s) 142, 534
Ppu21I YACGTR 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 1033
Psp6I CCWGG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 463, 1035
PspPI GGNCC 1 cut(s) 1033
PspPPI RGGWCCY 1 cut(s) 1033
PspXI VCTCGAGB 1 cut(s) 875
PstNI CAGNNNCTG 1 cut(s) 424
PteI GCGCGC 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 281, 463
RsaNI GTAC 2 cut(s) 280, 462
RseI CAYNNNNRTG 2 cut(s) 482, 738
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 3 cut(s) 48, 186, 773
SaqAI TTAA 5 cut(s) 318, 501, 510, 558, 744
SatI GCNGC 6 cut(s) 173, 191, 194, 354, 673, 1093
Sau3AI GATC 5 cut(s) 6, 110, 327, 796, 824
Sau96I GGNCC 1 cut(s) 1033
SchI GAGTC 2 cut(s) 142, 535
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 3 cut(s) 216, 805, 1105
SfaNI GCATC 3 cut(s) 478, 486, 841
SfcI CTRYAG 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 875
SfuI TTCGAA 2 cut(s) 925, 996
SinI GGWCC 1 cut(s) 1033
SlaI CTCGAG 1 cut(s) 875
SmiMI CAYNNNNRTG 2 cut(s) 482, 738
SmlI CTYRAG 3 cut(s) 80, 875, 1106
SmoI CTYRAG 3 cut(s) 80, 875, 1106
Sse9I AATT 3 cut(s) 134, 319, 792
SsiI CCGC 7 cut(s) 202, 353, 356, 664, 854, 977, 1093
SspI AATATT 1 cut(s) 437
SspMI CTAG 5 cut(s) 453, 773, 947, 974, 1130
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 461, 831
TaiI ACGT 2 cut(s) 306, 539
TaqI TCGA 7 cut(s) 5, 162, 252, 330, 876, 925, 996
TasI AATT 3 cut(s) 134, 319, 792
TauI GCSGC 2 cut(s) 356, 1095
TfiI GAWTC 4 cut(s) 332, 719, 927, 1079
Tru1I TTAA 5 cut(s) 318, 501, 510, 558, 744
Tru9I TTAA 5 cut(s) 318, 501, 510, 558, 744
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 172, 190, 193, 672
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 674, 971
TspGWI ACGGA 2 cut(s) 140, 949
TspRI CASTG 1 cut(s) 948
VneI GTGCAC 1 cut(s) 1101
VpaK11BI GGWCC 1 cut(s) 1033
VspI ATTAAT 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 262
XceI RCATGY 1 cut(s) 966
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XhoI CTCGAG 1 cut(s) 875
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 5 cut(s) 453, 773, 947, 974, 1130
ZraI GACGTC 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.