Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

3735563 .. 3735925

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG046800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTCAAGTACCTGCATGTCAAAGACATATGGGTTACATATCTTTCGAAGTTTGTGAAGAGATATGGGGGGACACAAATGGAACGCGCAAGAGCGCTATTCGAGGATGCCGTTAAAGTGGCTCCTTCTGACGCAAAGAAACCTTTGTATCTTCAGTTTGCAAAGCTGGAGGAGGATTATGGTCTAGCAAAGCGCGCTATGAATGTCTATCATGAAGCAATTGAGGCTGTTCCGAAACACGACAAGTTGAGCGTGTATGAATCTATATCGCCCGCGCAGCGGCCGGAGAGACTTGGTGTCCCCAAGACAAGGGAGATATATGCGCAAGCAATAGAATCTGGTCTTCCACACAAGGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

9.22

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_C	PF23231	1 - 120	1.9e-43	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	21
AccII	CGCG	3 cut(s)	87, 195, 275
AciI	CCGC	2 cut(s)	273, 280
AcoI	YGGCCR	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	279, 309
AgsI	TTSAA	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	296
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	6 cut(s)	89, 97, 195, 197, 277, 325
AsuII	TTCGAA	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	2 cut(s)	278, 281
BlsI	GCNGC	2 cut(s)	279, 282
BmeRI	GACNNNNNGTC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 309
BseGI	GGATG	2 cut(s)	112, 361
BseLI	CCNNNNNNNGG	2 cut(s)	279, 309
BsePI	GCGCGC	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	3 cut(s)	87, 195, 275
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	85, 284
BslI	CCNNNNNNNGG	2 cut(s)	279, 309
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	85, 284
BsnI	GGCC	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	47
BspACI	CCGC	2 cut(s)	273, 280
BspANI	GGCC	1 cut(s)	283
BspFNI	CGCG	3 cut(s)	87, 195, 275
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	47
BssHII	GCGCGC	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	195, 273, 327
BstF5I	GGATG	2 cut(s)	112, 361
BstFNI	CGCG	3 cut(s)	87, 195, 275
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	6 cut(s)	89, 97, 195, 197, 277, 325
BstMAI	GTCTC	1 cut(s)	283
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 224, 277
BstNSI	RCATGY	1 cut(s)	20
BstUI	CGCG	3 cut(s)	87, 195, 275
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	335
BstZI	CGGCCG	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	112, 361
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	195, 273, 327
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	6 cut(s)	89, 97, 195, 197, 277, 325
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	17, 212
CviJI	RGCY	4 cut(s)	122, 166, 227, 283
CviKI_1	RGCY	4 cut(s)	122, 166, 227, 283
CviQI	GTAC	1 cut(s)	10
DriI	GACNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	281
EagI	CGGCCG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	281
Eco47III	AGCGCT	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	137
FaeI	CATG	2 cut(s)	20, 215
FaqI	GGGAC	2 cut(s)	85, 284
FatI	CATG	2 cut(s)	16, 211
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	278, 281
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	278, 281
FspBI	CTAG	1 cut(s)	185
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	6 cut(s)	88, 96, 194, 196, 276, 324
GluI	GCNGC	2 cut(s)	278, 281
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	6 cut(s)	89, 97, 195, 197, 277, 325
Hin1II	CATG	2 cut(s)	20, 215
Hin6I	GCGC	6 cut(s)	87, 95, 193, 195, 275, 323
HinP1I	GCGC	6 cut(s)	87, 95, 193, 195, 275, 323
HinfI	GANTC	2 cut(s)	260, 335
HpaII	CCGG	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	130, 234
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	16, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 224, 277
Hsp92II	CATG	2 cut(s)	20, 215
HspAI	GCGC	6 cut(s)	87, 95, 193, 195, 275, 323
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	4 cut(s)	26, 152, 297, 324
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	70, 143, 335
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	4 cut(s)	97, 163, 166, 217
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	87, 195, 275
MwoI	GCNNNNNNNGC	3 cut(s)	194, 224, 277
NdeI	CATATG	1 cut(s)	29
NlaIII	CATG	2 cut(s)	20, 215
NlaIV	GGNNCC	1 cut(s)	123
NsbI	TGCGCA	1 cut(s)	324
NspI	RCATGY	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	47
PagI	TCATGA	1 cut(s)	211
PauI	GCGCGC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	260, 335
PkrI	GCNGC	2 cut(s)	279, 282
PspN4I	GGNNCC	1 cut(s)	123
PteI	GCGCGC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	278, 281
SetI	ASST	3 cut(s)	15, 145, 168
SfaNI	GCATC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	273, 280
SspMI	CTAG	1 cut(s)	185
TaqI	TCGA	2 cut(s)	47, 102
TasI	AATT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	260, 335
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	215, 228, 273
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.