Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Forward (+)

12130043 .. 12133017

Gene Structure 2975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGCTATCTCTCAAGAACTCTATCCCTCCCAAGACGACCTCCTCTACGAAGAAGAGCTTCTCCGAAACCCTTACAGCCACAAGCTCTGGTGGCGCTACCTTATCGCCCGATCTGACGCGCCCTTCAAGAAGCGCCGCACCATCTACGAGCGCGCCCTCAAGGCCCTTCCCGGAAGCTACAAGCTTTGGTACGCCTACCTCCGCGAGCGTCTAGAGCTCGTCCGCAACTTTCCGATCAACCACTCCGAGTACGAAACCCTAAACAACACCTTCGAGAGGGCGTTGGTGACAATGCATAAGATGCCGCGGATTTGGATTCTGTATTTACAGAGCCTGACGGAGCAGAGATTGGTCACGAGGACTCGCCGGAGTTTCGATCGGGCGCTGTGTGCTCTGCCGGTGCAGCAGCACGACCGGATTTGGGAGCTGTATTTGGTGTTCGTGAGCCAGAAGGGGATCCCTATCCAGACATCGCTTCGGGTCTACCGGAGGTACTTGCTTTATGACCCGACTCATGTTGAGGACTTTATTACGTTTTTGATAGAGTCTGAGCTGCGGCAAGATGCGGCGGAGAGGCTGGCCTCGGTGCTTAATGATGATCAGTTTAGGTCGATTAAGGGAAAGACTAAGCATAGGTTGTGGTTGGAGTTGTGTGATTCGCTTACTAAGAATGCCACGGCGGTTTCGGGGTTGAATGTGGATGCTATCATTAGAGGTGGGATTAAGAAGTTTACGGATGAGGTGGGAAGGCTGTGGACGTCGTTGCCGGATTATTATATTAAGAGGGGTTTGTTTGAGAAGGCTAGGGATGTGTTTGAGGAGGGGATGCAGACTGTGGTGACTGTGAGGGATTTTAGTGTGATTTTCGATGCGTATGCGCAGTTTGAAGAGAGTATGCTTGCGATTAAGATGGAGGCTTTGGGGAGTGATGAGGAGGAGGAGAAAGGAGAGAATGGGAGAATGGAAGATGAGGGCAGTGAAGAGGAGGAGGAAGATGTCCGAACCAATGTAGACTTGTCTGTGGCTGAGCTTCGGAGGAAAATACTCCATGGGTTTTGGCTATATGATGCGAATGATGTTGATTTGAGGTTGGCTCGATTGGACCATCTTATGGATAGAAGACCTGAACTGGCTAATAGTGTTCTTTTGAGACAAAATCCGCATAATGTAGAGCAATGGCACCGGAGAGTGAAGCTGTTTGAGGGGAATCCTACAAAGCAGATACTTACTTACACACAGGCTGTGAACACAGTGGATCCAATGCAAGCAGTGGGGAAGCCTCATACGTTGTGGGTTGCTTTTGCTAAGCTGTATGAAATACATGGAGATATTGCAAATGCAAGAGTAATTTTTGATAAGGCCGTCCAGGTGAACTACAAGACAGTGGATAATCTGGCTAGTCTGTGGTGTGAGTGGGCAGAAATGGAATTGCGGCATAAGAATTTTACACGCGCCCTGGAACTGATGAGAAGAGCTACAGCAGAGCCGTCTGTTGAGGTTAAACGAAGAGTTGCTGCTGATGGGAATCCACCAGTTCAGATGAGGCTCCATAAATCCTTGAGGCTTTGGACCTTTTATGTGGACTTGGAGGAGAGCCTGGGTACACTAGAGTCTACTCGGGCAGTGTATGAGAGGATATTGGATTTGAGAATAGCCACACCTCAAATAATAATCAACTATGCATTGCTTCTGGAAGAACATAAATACTTTGAAGATGCATTTAAAGTCTATGAAAAGGGTACTCAAATATTCAAGTACCCGCATGTCAAAGACATATGGATTATTTATCTCTCTAAATTTGTAAAAAGATATGGGAAGAATAAGCTGGAACGTGCAAGACTGCTCTTTGAGGATGCTGTTAAAGCGGCTCCTGCAGATGCGAAGAAATCATTGTATCTTCAATTTGCAAAGTTGGAGGAGGATTATGGTCTAGCAAAGCGGGCTATGAAGGTCTATGATGAAGCAACTAAGGCTGTTCCAAACCATGAAAAGTTGAGCATGTATGAAATCTACATTGCACGTGCAGCTGAGATATTTGGGGTCCCCAAAACAAGGGAGATATATGAGCAAGCAATAGAATCTGGACTCCCTGACAAAGATGTGAAGACAATGTGTCTAAAGTATGCTAAGCTCGAGAAGAGCTTGGGCGAAATTGATCGTGCTCGGGGAGTTTACGTATTTGCATCTCAGTTTTCAGATCCACGATCGGATGCAGAATTCTGGAACAAATGGCACGAGTTTGAGGTGCAACACGGGAATGAAGATACGTTTAGCGAAATGCTTCGAATCAAACGGAGTATTTCTGCAAGTTATAGCCAGACACACTTTATTCTACCCAAGTATATGATGCAAAAGGATCAGAGGTTGAGCATTGACGAGGCAAAAGACAAATTGAAACAGGCTGGAGTCCCCGAAGATGAAATGGCTGCTCTTGAGAGGCAGTGGGCTCCTGCGATCAGCGATACACCCTCTAAAGACAGCAACAGAAAAGTGGGCTTTGTGAGTGCTGGAATAGAATCACAGATTGATGGAGGGATAAAAGTTGCTGCAAATCACGAAGACATTGAACTACCAGAAGAAAGTGATTCTGAAGATGAGGCAAATGTTGAAATAGCACAAAAGGAGGTCCCAGCTGCTGTTTTTGGAGATTTGGCTAACAAAAGAAAGGATTCTGAAGATAATGAGGGCGCAGACCTTGGTGCTCTTGAGAGAATAAAGAGGCTGAAAAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

911

Amino Acids

106.03

Weight (kDa)

6.01

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	12 - 170	5.1e-58	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	15 - 143	1.4e-08	PRP39 N-terminal HAT repeat
HAT_Syf1_M	PF23220	173 - 318	3.1e-55	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_M	PF23220	356 - 418	3.4e-23	Pre-mRNA-splicing factor SYF1 middle HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	420 - 814	8.9e-191	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_C	PF23241	518 - 584	7.3e-06	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	523 - 654	2.7e-08	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	879
AccB1I	GGYRCC	1 cut(s)	1179
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AccI	GTMKAC	3 cut(s)	483, 1011, 1613
AccII	CGCG	5 cut(s)	119, 153, 204, 307, 1452
AclWI	GGATC	6 cut(s)	451, 464, 1250, 1263, 2192, 2364
AcsI	RAATTY	3 cut(s)	1441, 1796, 2216
AcuI	CTGAAG	2 cut(s)	2610, 2694
AcvI	CACGTG	1 cut(s)	2021
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	6 cut(s)	191, 251, 494, 1603, 1741, 1757
AfiI	CCNNNNNNNGG	4 cut(s)	276, 421, 1111, 2052
AgsI	TTSAA	9 cut(s)	127, 694, 887, 1712, 1753, 1901, 2395, 2567, 2609
AhdI	GACNNNNNGTC	1 cut(s)	2112
AjnI	CCWGG	3 cut(s)	1365, 1455, 1596
Alw21I	GWGCWC	4 cut(s)	219, 394, 2164, 2704
Alw26I	GTCTC	1 cut(s)	1144
AlwI	GGATC	6 cut(s)	451, 464, 1250, 1263, 2192, 2364
AlwNI	CAGNNNCTG	2 cut(s)	334, 2636
Ama87I	CYCGRG	3 cut(s)	1617, 2132, 2163
AoxI	GGCC	3 cut(s)	162, 579, 1359
ApeKI	GCWGC	8 cut(s)	403, 406, 553, 1514, 2024, 2426, 2546, 2633
ApoI	RAATTY	3 cut(s)	1441, 1796, 2216
Asp700I	GAANNNNTTC	3 cut(s)	57, 2280, 2668
AspLEI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 385, 880, 1454, 2690
AspS9I	GGNCC	5 cut(s)	163, 1102, 1569, 2041, 2626
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	3 cut(s)	298, 850, 1381
AsuII	TTCGAA	1 cut(s)	2284
AvaI	CYCGRG	3 cut(s)	1617, 2132, 2163
AvaII	GGWCC	4 cut(s)	1102, 1569, 2041, 2626
BamHI	GGATCC	2 cut(s)	456, 1255
BanI	GGYRCC	1 cut(s)	1179
BanII	GRGCYC	2 cut(s)	219, 2449
BauI	CACGAG	2 cut(s)	355, 2234
BbrPI	CACGTG	1 cut(s)	2021
BbsI	GAAGAC	3 cut(s)	1126, 2111, 2565
Bbv12I	GWGCWC	4 cut(s)	219, 394, 2164, 2704
BbvI	GCAGC	8 cut(s)	415, 418, 540, 1501, 2036, 2413, 2533, 2620
BccI	CCATC	5 cut(s)	149, 904, 1113, 1514, 2522
BceAI	ACGGC	3 cut(s)	693, 1346, 1471
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	3 cut(s)	1367, 1457, 1598
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	1144
BfaI	CTAG	5 cut(s)	212, 804, 1398, 1607, 1931
BfmI	CTRYAG	2 cut(s)	1476, 1872
BfoI	RGCGCY	3 cut(s)	97, 136, 386
BglI	GCCNNNNNGGC	1 cut(s)	161
BlpI	GCTNAGC	3 cut(s)	1026, 1305, 2127
Bme1390I	CCNGG	4 cut(s)	171, 1367, 1457, 1598
Bme18I	GGWCC	4 cut(s)	1102, 1569, 2041, 2626
BmeRI	GACNNNNNGTC	1 cut(s)	2112
BmeT110I	CYCGRG	3 cut(s)	1617, 2132, 2163
BmgT120I	GGNCC	5 cut(s)	163, 1102, 1569, 2041, 2626
BmiI	GGNNCC	9 cut(s)	458, 1181, 1257, 1547, 1869, 2042, 2043, 2448, 2628
BmrFI	CCNGG	4 cut(s)	171, 1367, 1457, 1598
BpiI	GAAGAC	3 cut(s)	1126, 2111, 2565
BplI	GAGNNNNNCTC	2 cut(s)	1078, 1110
BpmI	CTGGAG	1 cut(s)	2424
Bpu1102I	GCTNAGC	3 cut(s)	1026, 1305, 2127
Bpu14I	TTCGAA	1 cut(s)	2284
BpuEI	CTTGAG	4 cut(s)	143, 1579, 2453, 2726
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	2 cut(s)	2021, 2176
BsaBI	GATNNNNATC	2 cut(s)	461, 1524
BsaHI	GRCGYC	1 cut(s)	758
BsaJI	CCNNGG	7 cut(s)	305, 582, 675, 1048, 1455, 1597, 2695
BsaWI	WCCGGW	3 cut(s)	414, 486, 1182
BsaXI	ACNNNNNCTCC	2 cut(s)	2160, 2190
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 421, 1111, 2052
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	1134, 1532
Bse3DI	GCAATG	3 cut(s)	1181, 1682, 2013
Bse8I	GATNNNNATC	2 cut(s)	461, 1524
BseBI	CCWGG	3 cut(s)	1367, 1457, 1598
BseDI	CCNNGG	7 cut(s)	305, 582, 675, 1048, 1455, 1597, 2695
BseGI	GGATG	6 cut(s)	706, 742, 814, 831, 1858, 2215
BseJI	GATNNNNATC	2 cut(s)	461, 1524
BseLI	CCNNNNNNNGG	4 cut(s)	276, 421, 1111, 2052
BseMI	GCAATG	3 cut(s)	1181, 1682, 2013
BseMII	CTCAG	4 cut(s)	540, 1017, 2019, 2201
BseNI	ACTGG	2 cut(s)	1134, 1532
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	9 cut(s)	32, 833, 947, 950, 953, 998, 1001, 1604, 1931
BseXI	GCAGC	8 cut(s)	415, 418, 540, 1501, 2036, 2413, 2533, 2620
BseYI	CCCAGC	1 cut(s)	2629
BsgI	GTGCAG	2 cut(s)	422, 2043
Bsh1236I	CGCG	5 cut(s)	119, 153, 204, 307, 1452
Bsh1285I	CGRYCG	3 cut(s)	379, 415, 2207
BshFI	GGCC	3 cut(s)	164, 581, 1361
BshNI	GGYRCC	1 cut(s)	1179
BsiEI	CGRYCG	3 cut(s)	379, 415, 2207
BsiHKAI	GWGCWC	4 cut(s)	219, 394, 2164, 2704
BsiHKCI	CYCGRG	3 cut(s)	1617, 2132, 2163
BsiSI	CCGG	7 cut(s)	171, 367, 398, 415, 487, 767, 1183
BslFI	GGGAC	3 cut(s)	2027, 2393, 2612
BslI	CCNNNNNNNGG	4 cut(s)	276, 421, 1111, 2052
BsmAI	GTCTC	1 cut(s)	1144
BsmFI	GGGAC	3 cut(s)	2027, 2393, 2612
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	164, 581, 1361
BsoBI	CYCGRG	3 cut(s)	1617, 2132, 2163
Bsp119I	TTCGAA	1 cut(s)	2284
Bsp1286I	GDGCHC	5 cut(s)	219, 394, 2164, 2449, 2704
Bsp1720I	GCTNAGC	3 cut(s)	1026, 1305, 2127
Bsp19I	CCATGG	1 cut(s)	1048
BspANI	GGCC	3 cut(s)	164, 581, 1361
BspCNI	CTCAG	4 cut(s)	541, 1018, 2020, 2200
BspFNI	CGCG	5 cut(s)	119, 153, 204, 307, 1452
BspLI	GGNNCC	9 cut(s)	458, 1181, 1257, 1547, 1869, 2042, 2043, 2448, 2628
BspMAI	CTGCAG	1 cut(s)	1876
BspPI	GGATC	6 cut(s)	451, 464, 1250, 1263, 2192, 2364
BspQI	GCTCTTC	3 cut(s)	48, 1465, 2132
BspT104I	TTCGAA	1 cut(s)	2284
BspT107I	GGYRCC	1 cut(s)	1179
BsrDI	GCAATG	3 cut(s)	1181, 1682, 2013
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	1134, 1532
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	7 cut(s)	305, 582, 675, 1048, 1455, 1597, 2695
BssHII	GCGCGC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	758
BssSI	CACGAG	2 cut(s)	355, 2234
BssT1I	CCWWGG	2 cut(s)	1048, 2695
Bst2BI	CACGAG	2 cut(s)	355, 2234
Bst2UI	CCWGG	3 cut(s)	1367, 1457, 1598
Bst4CI	ACNGT	4 cut(s)	835, 844, 1252, 1384
Bst6I	CTCTTC	6 cut(s)	48, 882, 975, 1465, 1501, 2132
BstACI	GRCGYC	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBAI	YACGTR	2 cut(s)	2021, 2176
BstBI	TTCGAA	1 cut(s)	2284
BstC8I	GCNNGC	7 cut(s)	153, 206, 579, 900, 1266, 1941, 2070
BstDEI	CTNAG	9 cut(s)	549, 627, 666, 1026, 1305, 1968, 2028, 2127, 2187
BstDSI	CCRYGG	3 cut(s)	305, 675, 1048
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	6 cut(s)	706, 742, 814, 831, 1858, 2215
BstFNI	CGCG	5 cut(s)	119, 153, 204, 307, 1452
BstH2I	RGCGCY	3 cut(s)	97, 136, 386
BstHHI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 385, 880, 1454, 2690
BstMAI	GTCTC	1 cut(s)	1144
BstMCI	CGRYCG	3 cut(s)	379, 415, 2207
BstNI	CCWGG	3 cut(s)	1367, 1457, 1598
BstNSI	RCATGY	2 cut(s)	1766, 2002
BstSCI	CCNGG	4 cut(s)	169, 1365, 1455, 1596
BstSFI	CTRYAG	2 cut(s)	1476, 1872
BstSNI	TACGTA	1 cut(s)	2176
BstUI	CGCG	5 cut(s)	119, 153, 204, 307, 1452
BstV1I	GCAGC	8 cut(s)	415, 418, 540, 1501, 2036, 2413, 2533, 2620
BstV2I	GAAGAC	3 cut(s)	1126, 2111, 2565
BstX2I	RGATCY	3 cut(s)	456, 1255, 2197
BstYI	RGATCY	3 cut(s)	456, 1255, 2197
BsuRI	GGCC	3 cut(s)	164, 581, 1361
BtgI	CCRYGG	3 cut(s)	305, 675, 1048
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	6 cut(s)	706, 742, 814, 831, 1858, 2215
BtsI	GCAGTG	4 cut(s)	982, 1275, 1629, 2447
BtsIMutI	CAGTG	6 cut(s)	982, 1257, 1275, 1389, 1629, 2447
Cac8I	GCNNGC	7 cut(s)	153, 206, 579, 900, 1266, 1941, 2070
CaiI	CAGNNNCTG	2 cut(s)	334, 2636
CfoI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 385, 880, 1454, 2690
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	5 cut(s)	163, 1102, 1569, 2041, 2626
Cfr42I	CCGCGG	1 cut(s)	308
CseI	GACGC	2 cut(s)	125, 197
Csp6I	GTAC	6 cut(s)	190, 250, 493, 1602, 1740, 1756
CviAII	CATG	6 cut(s)	515, 1049, 1322, 1763, 1985, 1999
CviQI	GTAC	6 cut(s)	190, 250, 493, 1602, 1740, 1756
DdeI	CTNAG	9 cut(s)	549, 627, 666, 1026, 1305, 1968, 2028, 2127, 2187
DraI	TTTAAA	1 cut(s)	1723
DriI	GACNNNNNGTC	1 cut(s)	2112
Eam1104I	CTCTTC	6 cut(s)	48, 882, 975, 1465, 1501, 2132
Eam1105I	GACNNNNNGTC	1 cut(s)	2112
EarI	CTCTTC	6 cut(s)	48, 882, 975, 1465, 1501, 2132
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	1 cut(s)	217
Eco105I	TACGTA	1 cut(s)	2176
Eco130I	CCWWGG	2 cut(s)	1048, 2695
Eco24I	GRGCYC	2 cut(s)	219, 2449
Eco47I	GGWCC	4 cut(s)	1102, 1569, 2041, 2626
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	2610, 2694
Eco72I	CACGTG	1 cut(s)	2021
Eco88I	CYCGRG	3 cut(s)	1617, 2132, 2163
EcoICRI	GAGCTC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoO109I	RGGNCCY	3 cut(s)	163, 2041, 2626
EcoRI	GAATTC	1 cut(s)	2216
EcoRII	CCWGG	3 cut(s)	1365, 1455, 1596
EcoT14I	CCWWGG	2 cut(s)	1048, 2695
EcoT22I	ATGCAT	3 cut(s)	297, 1684, 1720
EcoT38I	GRGCYC	2 cut(s)	219, 2449
ErhI	CCWWGG	2 cut(s)	1048, 2695
FaeI	CATG	6 cut(s)	518, 1052, 1325, 1766, 1988, 2002
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	3 cut(s)	2027, 2393, 2612
FatI	CATG	6 cut(s)	514, 1048, 1321, 1762, 1984, 1998
FauI	CCCGC	2 cut(s)	1767, 1932
FauNDI	CATATG	1 cut(s)	1775
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	3 cut(s)	483, 1011, 1613
FokI	GGATG	6 cut(s)	713, 749, 821, 838, 1865, 2222
FriOI	GRGCYC	2 cut(s)	219, 2449
FspBI	CTAG	5 cut(s)	212, 804, 1398, 1607, 1931
FspI	TGCGCA	1 cut(s)	879
GlaI	GCGC	9 cut(s)	95, 120, 134, 152, 154, 384, 879, 1453, 2689
GsaI	CCCAGC	1 cut(s)	2633
GsuI	CTGGAG	1 cut(s)	2424
HaeII	RGCGCY	3 cut(s)	97, 136, 386
HaeIII	GGCC	3 cut(s)	164, 581, 1361
HapII	CCGG	7 cut(s)	171, 367, 398, 415, 487, 767, 1183
HgaI	GACGC	2 cut(s)	125, 197
HhaI	GCGC	9 cut(s)	96, 121, 135, 153, 155, 385, 880, 1454, 2690
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	6 cut(s)	518, 1052, 1325, 1766, 1988, 2002
Hin6I	GCGC	9 cut(s)	94, 119, 133, 151, 153, 383, 878, 1452, 2688
HinP1I	GCGC	9 cut(s)	94, 119, 133, 151, 153, 383, 878, 1452, 2688
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	7 cut(s)	171, 367, 398, 415, 487, 767, 1183
HphI	GGTGA	3 cut(s)	298, 850, 1381
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	7 cut(s)	133, 176, 280, 445, 741, 793, 1942
HpyCH4III	ACNGT	4 cut(s)	835, 844, 1252, 1384
HpyCH4IV	ACGT	7 cut(s)	533, 758, 1286, 1831, 2020, 2175, 2267
HpyF3I	CTNAG	9 cut(s)	549, 627, 666, 1026, 1305, 1968, 2028, 2127, 2187
HpySE526I	ACGT	7 cut(s)	533, 758, 1286, 1831, 2020, 2175, 2267
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	6 cut(s)	518, 1052, 1325, 1766, 1988, 2002
HspAI	GCGC	9 cut(s)	94, 119, 133, 151, 153, 383, 878, 1452, 2688
KflI	GGGWCCC	1 cut(s)	2041
Ksp22I	TGATCA	1 cut(s)	598
KspI	CCGCGG	1 cut(s)	308
LguI	GCTCTTC	3 cut(s)	48, 1465, 2132
LmnI	GCTCC	5 cut(s)	340, 424, 1551, 1873, 2452
Lsp1109I	GCAGC	8 cut(s)	415, 418, 540, 1501, 2036, 2413, 2533, 2620
MaeI	CTAG	5 cut(s)	212, 804, 1398, 1607, 1931
MaeII	ACGT	7 cut(s)	533, 758, 1286, 1831, 2020, 2175, 2267
MaeIII	GTNAC	3 cut(s)	286, 352, 838
MflI	RGATCY	3 cut(s)	456, 1255, 2197
MhlI	GDGCHC	5 cut(s)	219, 394, 2164, 2449, 2704
MluCI	AATT	8 cut(s)	1347, 1427, 1441, 1796, 1901, 2151, 2216, 2390
MlyI	GAGTC	6 cut(s)	355, 505, 554, 1619, 2079, 2415
MmeI	TCCRAC	2 cut(s)	624, 1893
Mph1103I	ATGCAT	3 cut(s)	297, 1684, 1720
MroXI	GAANNNNTTC	3 cut(s)	57, 2280, 2668
MseI	TTAA	8 cut(s)	591, 615, 723, 780, 906, 1500, 1722, 1860
MslI	CAYNNNNRTG	1 cut(s)	2256
MspA1I	CMGCKG	3 cut(s)	307, 2027, 2633
MspI	CCGG	7 cut(s)	171, 367, 398, 415, 487, 767, 1183
MspR9I	CCNGG	4 cut(s)	171, 1367, 1457, 1598
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	3 cut(s)	1367, 1457, 1598
MvnI	CGCG	5 cut(s)	119, 153, 204, 307, 1452
NciI	CCSGG	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	1048
NdeI	CATATG	1 cut(s)	1775
NlaIII	CATG	6 cut(s)	518, 1052, 1325, 1766, 1988, 2002
NlaIV	GGNNCC	9 cut(s)	458, 1181, 1257, 1547, 1869, 2042, 2043, 2448, 2628
NmuCI	GTSAC	3 cut(s)	286, 352, 838
NsbI	TGCGCA	1 cut(s)	879
NsiI	ATGCAT	3 cut(s)	297, 1684, 1720
NspI	RCATGY	2 cut(s)	1766, 2002
NspV	TTCGAA	1 cut(s)	2284
PaeR7I	CTCGAG	1 cut(s)	2132
PauI	GCGCGC	1 cut(s)	151
PciSI	GCTCTTC	3 cut(s)	48, 1465, 2132
PctI	GAATGC	1 cut(s)	676
PdmI	GAANNNNTTC	3 cut(s)	57, 2280, 2668
PfeI	GAWTC	9 cut(s)	316, 656, 1207, 1525, 2078, 2286, 2516, 2585, 2669
PflMI	CCANNNNNTGG	1 cut(s)	1111
PfoI	TCCNGGA	1 cut(s)	169
Ple19I	CGATCG	2 cut(s)	379, 2207
PleI	GAGTC	6 cut(s)	355, 505, 553, 1618, 2079, 2414
PmaCI	CACGTG	1 cut(s)	2021
PmlI	CACGTG	1 cut(s)	2021
PpsI	GAGTC	6 cut(s)	355, 505, 553, 1618, 2079, 2414
Ppu21I	YACGTR	2 cut(s)	2021, 2176
PpuMI	RGGWCCY	2 cut(s)	2041, 2626
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	2 cut(s)	2041, 2626
Psp6I	CCWGG	3 cut(s)	1365, 1455, 1596
PspCI	CACGTG	1 cut(s)	2021
PspFI	CCCAGC	1 cut(s)	2629
PspGI	CCWGG	3 cut(s)	1365, 1455, 1596
PspN4I	GGNNCC	9 cut(s)	458, 1181, 1257, 1547, 1869, 2042, 2043, 2448, 2628
PspPI	GGNCC	5 cut(s)	163, 1102, 1569, 2041, 2626
PspPPI	RGGWCCY	2 cut(s)	2041, 2626
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PstI	CTGCAG	1 cut(s)	1876
PstNI	CAGNNNCTG	2 cut(s)	334, 2636
PsuI	RGATCY	3 cut(s)	456, 1255, 2197
PteI	GCGCGC	1 cut(s)	151
PvuI	CGATCG	2 cut(s)	379, 2207
PvuII	CAGCTG	2 cut(s)	2027, 2633
RsaI	GTAC	6 cut(s)	191, 251, 494, 1603, 1741, 1757
RsaNI	GTAC	6 cut(s)	190, 250, 493, 1602, 1740, 1756
RseI	CAYNNNNRTG	1 cut(s)	2256
SacI	GAGCTC	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	308
SapI	GCTCTTC	3 cut(s)	48, 1465, 2132
SaqAI	TTAA	8 cut(s)	591, 615, 723, 780, 906, 1500, 1722, 1860
Sau96I	GGNCC	5 cut(s)	163, 1102, 1569, 2041, 2626
SchI	GAGTC	6 cut(s)	355, 505, 554, 1619, 2079, 2415
ScrFI	CCNGG	4 cut(s)	171, 1367, 1457, 1598
SduI	GDGCHC	5 cut(s)	219, 394, 2164, 2449, 2704
SfcI	CTRYAG	2 cut(s)	1476, 1872
Sfr274I	CTCGAG	1 cut(s)	2132
Sfr303I	CCGCGG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	2284
SgrBI	CCGCGG	1 cut(s)	308
SinI	GGWCC	4 cut(s)	1102, 1569, 2041, 2626
SlaI	CTCGAG	1 cut(s)	2132
SmiMI	CAYNNNNRTG	1 cut(s)	2256
SmlI	CTYRAG	6 cut(s)	12, 158, 1558, 2132, 2432, 2705
SmoI	CTYRAG	6 cut(s)	12, 158, 1558, 2132, 2432, 2705
SnaBI	TACGTA	1 cut(s)	2176
Sse9I	AATT	8 cut(s)	1347, 1427, 1441, 1796, 1901, 2151, 2216, 2390
SspI	AATATT	1 cut(s)	1749
SspMI	CTAG	5 cut(s)	212, 804, 1398, 1607, 1931
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	4 cut(s)	169, 1365, 1455, 1596
StyI	CCWWGG	2 cut(s)	1048, 2695
TaaI	ACNGT	4 cut(s)	835, 844, 1252, 1384
TaiI	ACGT	7 cut(s)	536, 761, 1289, 1834, 2023, 2178, 2270
TaqI	TCGA	7 cut(s)	273, 375, 611, 867, 1096, 2133, 2284
TasI	AATT	8 cut(s)	1347, 1427, 1441, 1796, 1901, 2151, 2216, 2390
TauI	GCSGC	6 cut(s)	138, 307, 559, 569, 1435, 1868
TfiI	GAWTC	9 cut(s)	316, 656, 1207, 1525, 2078, 2286, 2516, 2585, 2669
Tru1I	TTAA	8 cut(s)	591, 615, 723, 780, 906, 1500, 1722, 1860
Tru9I	TTAA	8 cut(s)	591, 615, 723, 780, 906, 1500, 1722, 1860
TscAI	CASTG	6 cut(s)	982, 1257, 1275, 1389, 1629, 2447
TseFI	GTSAC	3 cut(s)	286, 352, 838
TseI	GCWGC	8 cut(s)	403, 406, 553, 1514, 2024, 2426, 2546, 2633
Tsp45I	GTSAC	3 cut(s)	286, 352, 838
TspDTI	ATGAA	8 cut(s)	1329, 1746, 1961, 1974, 2001, 2019, 2274, 2433
TspGWI	ACGGA	3 cut(s)	353, 749, 2308
TspRI	CASTG	6 cut(s)	982, 1257, 1275, 1389, 1629, 2447
Van91I	CCANNNNNTGG	1 cut(s)	1111
VpaK11BI	GGWCC	4 cut(s)	1102, 1569, 2041, 2626
XagI	CCTNNNNNAGG	1 cut(s)	274
XapI	RAATTY	3 cut(s)	1441, 1796, 2216
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	2 cut(s)	1766, 2002
XhoI	CTCGAG	1 cut(s)	2132
XmiI	GTMKAC	3 cut(s)	483, 1011, 1613
XmnI	GAANNNNTTC	3 cut(s)	57, 2280, 2668
XspI	CTAG	5 cut(s)	212, 804, 1398, 1607, 1931
ZraI	GACGTC	1 cut(s)	759
Zsp2I	ATGCAT	3 cut(s)	297, 1684, 1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.