Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

3867822 .. 3868562

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCACAAGATGCCGCAGATTTGGCTTATGTATTTGCAGAGCCTGACGGAGCAGAAATTGATCACCAGGACTCGCCGGACTTTCGACAGAGCGCTGTGTGCTCTTCCCGTGCAGCTGCACGACCGCGTTTGGGAGCTCTACCTTGCCTTCGTTAGTCAGAAGGGTATCCCAATCGAGACCTCGCTTAGGGTTTACCGGAGGTACTTGCAGTTTGACCCTACTTACGTGGAAGACTACATTAATTTCTTGATCGATTCTAGTCTTTGGCAAGAGGCGGCGGAGAAGCTCGCCTCGGTGTTGAATGATGATGAGCACGGTACCAAGGTCTCGGGTATCAATGTGGATGCTATCATTAGAGGTGGGATTAAGACATTTAAAGACGAGGTGGGGAGTCTGTGGACGTCGCTGGCTGACTATTACATTAAAAGGAGCTTATTTGAGGAGGCTATGCAAAGTATGTACATGATGAAAGAGGATGAAGAGGAGGACGAGGACGAGGAAGCAGATGTTCGAACCAATGTAAACTTGTCTGAGGTTGAGTTTAAAAAGAGATTCAAATTTGCTCACCATTTTTATTTTGTGGTGATATCACCACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

200

Amino Acids

23.65

Weight (kDa)

5.11

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	1 - 73	1.5e-27	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_M	PF23220	108 - 150	6.2e-13	Pre-mRNA-splicing factor SYF1 middle HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	14, 124, 275, 278
AcsI	RAATTY	1 cut(s)	557
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	203, 319, 461
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	130, 186
AgsI	TTSAA	2 cut(s)	301, 556
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	4 cut(s)	115, 136, 286, 432
AluI	AGCT	4 cut(s)	115, 136, 286, 432
Alw21I	GWGCWC	3 cut(s)	103, 138, 315
Alw26I	GTCTC	2 cut(s)	170, 331
AlwNI	CAGNNNCTG	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	328
Aor51HI	AGCGCT	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	112, 115
ApoI	RAATTY	1 cut(s)	557
AseI	ATTAAT	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	4 cut(s)	55, 557, 582, 595
AsuII	TTCGAA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	103, 138, 315
BbvI	GCAGC	2 cut(s)	102, 124
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	170, 331
BfaI	CTAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	14, 113, 116, 276
BlsI	GCNGC	4 cut(s)	15, 114, 117, 277
Bme1390I	CCNGG	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	170, 331
BsaJI	CCNNGG	2 cut(s)	291, 321
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 186
BseBI	CCWGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	291, 321
BseGI	GGATG	2 cut(s)	349, 481
BseLI	CCNNNNNNNGG	2 cut(s)	130, 186
BseMII	CTCAG	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	455, 497
BseXI	GCAGC	2 cut(s)	102, 124
BsgI	GTGCAG	2 cut(s)	101, 131
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	103, 138, 315
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	76, 196
BslI	CCNNNNNNNGG	2 cut(s)	130, 186
BsmAI	GTCTC	2 cut(s)	170, 331
Bso31I	GGTCTC	2 cut(s)	170, 331
BsoBI	CYCGRG	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	103, 138, 315
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	60, 249
BspACI	CCGC	4 cut(s)	14, 124, 275, 278
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	2 cut(s)	170, 331
BsrGI	TGTACA	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	291, 321
BssMI	GATC	2 cut(s)	60, 249
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	108, 474
BstACI	GRCGYC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	288, 408
BstDEI	CTNAG	2 cut(s)	185, 531
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	349, 481
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	63, 252
BstMAI	GTCTC	2 cut(s)	170, 331
BstMBI	GATC	2 cut(s)	60, 249
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 22, 98
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	102, 124
BstV2I	GAAGAC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	349, 481
Cac8I	GCNNGC	2 cut(s)	288, 408
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	202, 318, 460
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	8 cut(s)	25, 42, 115, 136, 286, 410, 432, 446
CviKI_1	RGCY	8 cut(s)	25, 42, 115, 136, 286, 410, 432, 446
CviQI	GTAC	3 cut(s)	202, 318, 460
DdeI	CTNAG	2 cut(s)	185, 531
DpnI	GATC	2 cut(s)	62, 251
DpnII	GATC	2 cut(s)	60, 249
DraI	TTTAAA	2 cut(s)	376, 544
Eam1104I	CTCTTC	2 cut(s)	108, 474
EarI	CTCTTC	2 cut(s)	108, 474
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	2 cut(s)	170, 331
Eco32I	GATATC	1 cut(s)	588
Eco47III	AGCGCT	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	466
FaiI	YATR	4 cut(s)	29, 449, 458, 464
FatI	CATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	14, 113, 116, 276
FokI	GGATG	2 cut(s)	356, 488
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	14, 113, 116, 276
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	4 cut(s)	14, 113, 116, 276
HaeII	RGCGCY	1 cut(s)	95
HapII	CCGG	2 cut(s)	76, 196
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	4 cut(s)	70, 254, 391, 552
HpaII	CCGG	2 cut(s)	76, 196
HphI	GGTGA	4 cut(s)	55, 557, 582, 595
Hpy166II	GTNNAC	3 cut(s)	193, 399, 523
Hpy188I	TCNGA	2 cut(s)	159, 532
Hpy188III	TCNNGA	2 cut(s)	175, 247
Hpy8I	GTNNAC	3 cut(s)	193, 399, 523
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	154, 157
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	225, 401
HpyCH4V	TGCA	6 cut(s)	4, 37, 112, 118, 208, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 22, 98
HpyF3I	CTNAG	2 cut(s)	185, 531
HpySE526I	ACGT	2 cut(s)	225, 401
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	60, 249
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	49, 133, 429
LpnPI	CCDG	6 cut(s)	52, 56, 79, 89, 209, 392
Lsp1109I	GCAGC	2 cut(s)	102, 124
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	225, 401
MalI	GATC	2 cut(s)	62, 251
MboI	GATC	2 cut(s)	60, 249
MboII	GAAGA	3 cut(s)	95, 242, 491
MhlI	GDGCHC	3 cut(s)	103, 138, 315
MluCI	AATT	4 cut(s)	56, 241, 557, 598
MlyI	GAGTC	2 cut(s)	64, 400
MseI	TTAA	6 cut(s)	240, 366, 375, 423, 543, 601
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	76, 196
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	10, 22, 98
NdeII	GATC	2 cut(s)	60, 249
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	511
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	254, 552
PkrI	GCNGC	4 cut(s)	15, 114, 117, 277
PleI	GAGTC	2 cut(s)	64, 399
PpsI	GAGTC	2 cut(s)	64, 399
Ppu21I	YACGTR	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	203, 319, 461
RsaNI	GTAC	3 cut(s)	202, 318, 460
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	6 cut(s)	240, 366, 375, 423, 543, 601
SatI	GCNGC	4 cut(s)	14, 113, 116, 276
Sau3AI	GATC	2 cut(s)	60, 249
SchI	GAGTC	2 cut(s)	64, 400
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	103, 138, 315
SfaNI	GCATC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	511
Sse9I	AATT	4 cut(s)	56, 241, 557, 598
SsiI	CCGC	4 cut(s)	14, 124, 275, 278
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	228, 404
TaqI	TCGA	4 cut(s)	84, 174, 252, 511
TasI	AATT	4 cut(s)	56, 241, 557, 598
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	16, 278
TfiI	GAWTC	2 cut(s)	254, 552
Tru1I	TTAA	6 cut(s)	240, 366, 375, 423, 543, 601
Tru9I	TTAA	6 cut(s)	240, 366, 375, 423, 543, 601
TseI	GCWGC	2 cut(s)	112, 115
TspDTI	ATGAA	2 cut(s)	482, 492
TspGWI	ACGGA	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	557
XspI	CTAG	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.