Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327759.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 966

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 965 bp

tgcatggctatctctcaagaactctatccctcccaagacgacctcctctacgaagaagagcttctccgaaacccttacagccacaagctctggtggcgctaccttatcgcccgatctgacgcgcccttcaagaagcgccgcaccatctacgagcgcgccctcaaggcccttcccggaagctacaagctttggtacgcctacctccgcgagcgtctagagctcgtccgcaactttccgatcaaccactccgagtacgaaaccctaaacaacaccttcgagagggcgttggtgacaatgcataagatgccgcggatttggattctgtatttacagagcctgacggagcagagattggtcacgaggactcgccggagtttcgatcgggcgctgtgtgctctgccggtgcagcagcacgaccggatttgggagctgtatttggtgttcgtgagccagaaggggatccctatccagacatcgcttcgggtctaccggaggtacttgctttatgacccgactcatgttgaggactttattacgtttttgatagagtctgagctgcggcaagatgcggcggagaggctggcctcggtgcttaatgatgatcagtttaggtcgattaagggaaagactaagcataggttgtggttggagttgtgtgattcgcttactaagaatgccacggcggtttcggggttgaatgtggatgctatcattagaggtgggattaagaagtttacggatgaggtgggaaggctgtggacgtcgttgccggattattatattaagaggggtttgtttgagaaggctagggatgtgtttgaggaggggatgcagactgtggtgactgtgagggattttagtgtgattttcgatgcgtatgcgcagtttgaagagagtatgcttgcgattaagatggaggctttggggagtgatgaggaggaggagaaaggagagaatgggagaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

321

Amino Acids

38.02

Weight (kDa)

7.18

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	764
Acc16I	TGCGCA	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	4 cut(s)	122, 156, 207, 310
AciI	CCGC	9 cut(s)	139, 205, 226, 308, 310, 559, 569, 572, 683
AclWI	GGATC	2 cut(s)	454, 467
AcyI	GRCGYC	1 cut(s)	761
AfaI	GTAC	3 cut(s)	194, 254, 497
AfiI	CCNNNNNNNGG	2 cut(s)	279, 424
AgsI	TTSAA	3 cut(s)	130, 697, 890
AluBI	AGCT	7 cut(s)	61, 88, 180, 187, 220, 430, 556
AluI	AGCT	7 cut(s)	61, 88, 180, 187, 220, 430, 556
Alw21I	GWGCWC	2 cut(s)	222, 397
AlwI	GGATC	2 cut(s)	454, 467
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	165, 582
ApeKI	GCWGC	3 cut(s)	406, 409, 556
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	7 cut(s)	99, 124, 138, 156, 158, 388, 883
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	301, 853
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	222, 397
BbvI	GCAGC	3 cut(s)	418, 421, 543
BccI	CCATC	2 cut(s)	152, 907
BceAI	ACGGC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	174
BfaI	CTAG	2 cut(s)	215, 807
BfoI	RGCGCY	3 cut(s)	100, 139, 389
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	7 cut(s)	139, 308, 407, 410, 557, 560, 570
BlsI	GCNGC	7 cut(s)	140, 309, 408, 411, 558, 561, 571
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	5 cut(s)	294, 556, 694, 819, 862
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	308, 585, 678
BsaWI	WCCGGW	2 cut(s)	417, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 424
Bse118I	RCCGGY	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	464
BseDI	CCNNGG	3 cut(s)	308, 585, 678
BseGI	GGATG	4 cut(s)	709, 745, 817, 834
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	279, 424
BseMII	CTCAG	1 cut(s)	543
BsePI	GCGCGC	1 cut(s)	154
BseRI	GAGGAG	5 cut(s)	35, 836, 950, 953, 956
BseXI	GCAGC	3 cut(s)	418, 421, 543
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	4 cut(s)	122, 156, 207, 310
Bsh1285I	CGRYCG	2 cut(s)	382, 418
BshFI	GGCC	2 cut(s)	167, 584
BsiEI	CGRYCG	2 cut(s)	382, 418
BsiHKAI	GWGCWC	2 cut(s)	222, 397
BsiSI	CCGG	6 cut(s)	174, 370, 401, 418, 490, 770
BslI	CCNNNNNNNGG	2 cut(s)	279, 424
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	167, 584
Bsp1286I	GDGCHC	2 cut(s)	222, 397
Bsp143I	GATC	5 cut(s)	113, 237, 379, 459, 601
BspACI	CCGC	9 cut(s)	139, 205, 226, 308, 310, 559, 569, 572, 683
BspANI	GGCC	2 cut(s)	167, 584
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	4 cut(s)	122, 156, 207, 310
BspLI	GGNNCC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	454, 467
BspQI	GCTCTTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	308, 585, 678
BssHII	GCGCGC	1 cut(s)	154
BssMI	GATC	5 cut(s)	113, 237, 379, 459, 601
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	838, 847
Bst6I	CTCTTC	2 cut(s)	51, 885
BstACI	GRCGYC	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	4 cut(s)	156, 209, 582, 903
BstDEI	CTNAG	3 cut(s)	552, 630, 669
BstDSI	CCRYGG	2 cut(s)	308, 678
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	709, 745, 817, 834
BstFNI	CGCG	4 cut(s)	122, 156, 207, 310
BstH2I	RGCGCY	3 cut(s)	100, 139, 389
BstHHI	GCGC	7 cut(s)	99, 124, 138, 156, 158, 388, 883
BstKTI	GATC	5 cut(s)	116, 240, 382, 462, 604
BstMBI	GATC	5 cut(s)	113, 237, 379, 459, 601
BstMCI	CGRYCG	2 cut(s)	382, 418
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 164, 217, 304, 392, 406
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	4 cut(s)	122, 156, 207, 310
BstV1I	GCAGC	3 cut(s)	418, 421, 543
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	167, 584
BtgI	CCRYGG	2 cut(s)	308, 678
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	709, 745, 817, 834
Cac8I	GCNNGC	4 cut(s)	156, 209, 582, 903
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	7 cut(s)	99, 124, 138, 156, 158, 388, 883
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	1 cut(s)	311
CseI	GACGC	2 cut(s)	128, 200
Csp6I	GTAC	3 cut(s)	193, 253, 496
CviAII	CATG	2 cut(s)	4, 518
CviQI	GTAC	3 cut(s)	193, 253, 496
DdeI	CTNAG	3 cut(s)	552, 630, 669
DpnI	GATC	5 cut(s)	115, 239, 381, 461, 603
DpnII	GATC	5 cut(s)	113, 237, 379, 459, 601
Eam1104I	CTCTTC	2 cut(s)	51, 885
EarI	CTCTTC	2 cut(s)	51, 885
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	7, 521
FaiI	YATR	8 cut(s)	5, 300, 507, 519, 636, 780, 879, 899
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	2 cut(s)	3, 517
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	7 cut(s)	139, 308, 407, 410, 557, 560, 570
FokI	GGATG	4 cut(s)	716, 752, 824, 841
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	7 cut(s)	139, 308, 407, 410, 557, 560, 570
FspBI	CTAG	2 cut(s)	215, 807
FspI	TGCGCA	1 cut(s)	882
GlaI	GCGC	7 cut(s)	98, 123, 137, 155, 157, 387, 882
GluI	GCNGC	7 cut(s)	139, 308, 407, 410, 557, 560, 570
HaeII	RGCGCY	3 cut(s)	100, 139, 389
HaeIII	GGCC	2 cut(s)	167, 584
HapII	CCGG	6 cut(s)	174, 370, 401, 418, 490, 770
HgaI	GACGC	2 cut(s)	128, 200
HhaI	GCGC	7 cut(s)	99, 124, 138, 156, 158, 388, 883
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	2 cut(s)	7, 521
Hin6I	GCGC	7 cut(s)	97, 122, 136, 154, 156, 386, 881
HinP1I	GCGC	7 cut(s)	97, 122, 136, 154, 156, 386, 881
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	319, 364, 514, 548, 659
HpaII	CCGG	6 cut(s)	174, 370, 401, 418, 490, 770
HphI	GGTGA	2 cut(s)	301, 853
Hpy166II	GTNNAC	3 cut(s)	487, 735, 759
Hpy188I	TCNGA	5 cut(s)	68, 118, 237, 250, 553
Hpy188III	TCNNGA	7 cut(s)	17, 130, 215, 277, 358, 445, 469
Hpy8I	GTNNAC	3 cut(s)	487, 735, 759
Hpy99I	CGWCG	1 cut(s)	766
HpyAV	CCTTC	6 cut(s)	136, 179, 283, 448, 744, 796
HpyCH4III	ACNGT	2 cut(s)	838, 847
HpyCH4IV	ACGT	2 cut(s)	536, 761
HpyCH4V	TGCA	4 cut(s)	3, 298, 406, 832
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 164, 217, 304, 392, 406
HpyF3I	CTNAG	3 cut(s)	552, 630, 669
HpySE526I	ACGT	2 cut(s)	536, 761
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	2 cut(s)	7, 521
HspAI	GCGC	7 cut(s)	97, 122, 136, 154, 156, 386, 881
Ksp22I	TGATCA	1 cut(s)	601
KspI	CCGCGG	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	113, 237, 379, 459, 601
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	343, 427
Lsp1109I	GCAGC	3 cut(s)	418, 421, 543
LweI	GCATC	5 cut(s)	294, 556, 694, 819, 862
MaeI	CTAG	2 cut(s)	215, 807
MaeII	ACGT	2 cut(s)	536, 761
MaeIII	GTNAC	3 cut(s)	289, 355, 841
MalI	GATC	5 cut(s)	115, 239, 381, 461, 603
MboI	GATC	5 cut(s)	113, 237, 379, 459, 601
MboII	GAAGA	3 cut(s)	65, 68, 902
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	222, 397
MlyI	GAGTC	3 cut(s)	358, 508, 557
MmeI	TCCRAC	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	5 cut(s)	594, 618, 726, 783, 909
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	6 cut(s)	174, 370, 401, 418, 490, 770
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	679
MvnI	CGCG	4 cut(s)	122, 156, 207, 310
MwoI	GCNNNNNNNGC	6 cut(s)	94, 164, 217, 304, 392, 406
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	113, 237, 379, 459, 601
NlaIII	CATG	2 cut(s)	7, 521
NlaIV	GGNNCC	1 cut(s)	461
NmuCI	GTSAC	3 cut(s)	289, 355, 841
NsbI	TGCGCA	1 cut(s)	882
NsiI	ATGCAT	1 cut(s)	300
PauI	GCGCGC	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	319, 659
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	7 cut(s)	140, 309, 408, 411, 558, 561, 571
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	3 cut(s)	358, 508, 556
PpsI	GAGTC	3 cut(s)	358, 508, 556
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	166
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	459
PteI	GCGCGC	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	194, 254, 497
RsaNI	GTAC	3 cut(s)	193, 253, 496
SacI	GAGCTC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	594, 618, 726, 783, 909
SatI	GCNGC	7 cut(s)	139, 308, 407, 410, 557, 560, 570
Sau3AI	GATC	5 cut(s)	113, 237, 379, 459, 601
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	3 cut(s)	358, 508, 557
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	222, 397
SfaNI	GCATC	5 cut(s)	294, 556, 694, 819, 862
Sfr303I	CCGCGG	1 cut(s)	311
SgrBI	CCGCGG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	15, 161
SmoI	CTYRAG	2 cut(s)	15, 161
SsiI	CCGC	9 cut(s)	139, 205, 226, 308, 310, 559, 569, 572, 683
SspMI	CTAG	2 cut(s)	215, 807
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	838, 847
TaiI	ACGT	2 cut(s)	539, 764
TaqI	TCGA	4 cut(s)	276, 378, 614, 870
TauI	GCSGC	4 cut(s)	141, 310, 562, 572
TfiI	GAWTC	2 cut(s)	319, 659
Tru1I	TTAA	5 cut(s)	594, 618, 726, 783, 909
Tru9I	TTAA	5 cut(s)	594, 618, 726, 783, 909
TseFI	GTSAC	3 cut(s)	289, 355, 841
TseI	GCWGC	3 cut(s)	406, 409, 556
Tsp45I	GTSAC	3 cut(s)	289, 355, 841
TspGWI	ACGGA	2 cut(s)	356, 752
XagI	CCTNNNNNAGG	1 cut(s)	277
XbaI	TCTAGA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	215, 807
ZraI	GACGTC	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.