Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005583.1

Orthogroup ID

OG0001333

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1329

Gene Structure 1328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 590 bp

gctcctgctgatgcgaagaaacctttgtatcttcaatttgcaaagctggaggaggattatggtctagcgaagcgggctatgaaggtctatgatgaagcaactaaggctgttccaaaccatgaaaagttgagcatgtatgaaatctatattgcccgtgcagctgagatatttgggatccccaaaacaagggagatatatgagcaagcaatagaatctggtctccctgacaaagatgtgaagacaatgtgcctaaagtatgctgagctcgagaagagcttgggcgaaattgatcgtgctcggggagtttatgtatttgcatctcaattttcagatccacgatcggatgcagaattctggaacaaatggcacgagtttgaggtgcaacatgggaatgaagatacgttcagagaaatgcttcgaatcaaacggagtgtttctgcaagctatagccagacacactttattctacctgagtacatgatgcaaaaggaccagaggttgagcattgatgaggcaaaagacaaattgaaacaggctggagtccccgaagatgaaatggctgctcttgagaggcagttggctcctgcgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000974 GO:0001701 GO:0001824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0051716 GO:0065003 GO:0071007 GO:0071010 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Suf

Protein Analysis

196

Amino Acids

22.62

Weight (kDa)

5.39

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28740
fragaria_vesca	FvH4_3g03910 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150 FvH4_3g04150
malus_domestica	MD05G1324400.v1.1 MD10G1302200.v1.1
prunus_persica	Prupe.5G013200_v2.0.a1
pyrus_communis	pycom05g29860 pycom10g25470
rosa_chinensis	RchiOBHm_Chr5g0006181 RchiOBHm_Chr5g0006191 RchiOBHm_Chr5g0006201 RchiOBHm_Chr5g0006601 RchiOBHm_Chr7g0193971
rosa_laevigata	RLG00000004227 RLG00000031375 RLG00000031376 RLG00000031403
rosa_multiflora	Rmu_co7988368.1_g000001 Rmu_co8257165.1_g000001 Rmu_co8304153.1_g000001 Rmu_co8327759.1_g000001 Rmu_sc0001972.1_g000002 Rmu_sc0002389.1_g000006 Rmu_sc0004331.1_g000002 Rmu_sc0005583.1_g000001 Rmu_sc0009371.1_g000007 Rmu_sc0011154.1_g000005 Rmu_sc0024345.1_g000002 Rmu_sc0032392.1_g000001 Rmu_sc0032393.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069420 Rroxscaffold_1G00069440 Rroxscaffold_1G00069800 Rroxscaffold_2G00122720 Rroxscaffold_3G00261670
rosa_rugosa	Rorug04G0422900
rosa_samantha	Rh5AG050200 Rh5BG046700 Rh5BG046800 Rh5BG049400 Rh5CG055400 Rh5CG055600 Rh5CG057800 Rh5DG046500 Rh5DG048800 Rh7AG139900 Rh7AG140000 Rh7DG141300
rosa_wichuraiana	Rw5G004790 Rw5G005020 Rw7G011940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	169, 182, 326
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	35, 529
AluBI	AGCT	5 cut(s)	46, 161, 265, 276, 444
AluI	AGCT	5 cut(s)	46, 161, 265, 276, 444
Alw21I	GWGCWC	2 cut(s)	267, 298
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	3 cut(s)	169, 182, 326
Ama87I	CYCGRG	2 cut(s)	266, 297
ApeKI	GCWGC	2 cut(s)	158, 560
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	490
AsuII	TTCGAA	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	266, 297
AvaII	GGWCC	1 cut(s)	490
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BamHI	GGATCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	267, 298
BbvI	GCAGC	2 cut(s)	170, 547
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	2 cut(s)	159, 561
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	160, 562
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	2 cut(s)	266, 297
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	176, 582
BmsI	GCATC	3 cut(s)	326, 334, 471
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	68, 558
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	3 cut(s)	153, 252, 462
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	170, 547
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	341
BsiHKAI	GWGCWC	2 cut(s)	267, 298
BsiHKCI	CYCGRG	2 cut(s)	266, 297
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	2 cut(s)	266, 297
Bsp119I	TTCGAA	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	267, 298
Bsp143I	GATC	4 cut(s)	174, 289, 331, 338
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	154, 253, 463
BspLI	GGNNCC	2 cut(s)	176, 582
BspPI	GGATC	3 cut(s)	169, 182, 326
BspQI	GCTCTTC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	224
BssMI	GATC	4 cut(s)	174, 289, 331, 338
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	418
BstC8I	GCNNGC	3 cut(s)	75, 204, 442
BstDEI	CTNAG	4 cut(s)	102, 162, 261, 471
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	4 cut(s)	177, 292, 334, 341
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	174, 289, 331, 338
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 104, 158
BstNSI	RCATGY	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	170, 547
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	174, 331
BstYI	RGATCY	2 cut(s)	174, 331
BtsCI	GGATG	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	75, 204, 442
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	4 cut(s)	119, 133, 386, 478
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	102, 162, 261, 471
DpnI	GATC	4 cut(s)	176, 291, 333, 340
DpnII	GATC	4 cut(s)	174, 289, 331, 338
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	266, 297
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	4 cut(s)	122, 136, 389, 481
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	4 cut(s)	118, 132, 385, 477
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	159, 561
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	159, 561
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	159, 561
GsuI	CTGGAG	2 cut(s)	68, 558
Hin1II	CATG	4 cut(s)	122, 136, 389, 481
HinfI	GANTC	3 cut(s)	212, 420, 540
Hpy188I	TCNGA	3 cut(s)	331, 343, 407
Hpy188III	TCNNGA	3 cut(s)	268, 355, 566
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	7 cut(s)	41, 158, 317, 347, 382, 440, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 104, 158
HpyF3I	CTNAG	4 cut(s)	102, 162, 261, 471
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	122, 136, 389, 481
Kzo9I	GATC	4 cut(s)	174, 289, 331, 338
LguI	GCTCTTC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	7, 586
Lsp1109I	GCAGC	2 cut(s)	170, 547
LweI	GCATC	3 cut(s)	326, 334, 471
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	401
MalI	GATC	4 cut(s)	176, 291, 333, 340
MboI	GATC	4 cut(s)	174, 289, 331, 338
MboII	GAAGA	6 cut(s)	23, 28, 250, 283, 407, 560
MflI	RGATCY	2 cut(s)	174, 331
MhlI	GDGCHC	2 cut(s)	267, 298
MluCI	AATT	5 cut(s)	35, 285, 323, 350, 524
MlyI	GAGTC	1 cut(s)	549
MnlI	CCTC	6 cut(s)	43, 46, 370, 489, 505, 564
MroXI	GAANNNNTTC	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	74, 104, 158
NdeII	GATC	4 cut(s)	174, 289, 331, 338
NlaIII	CATG	4 cut(s)	122, 136, 389, 481
NlaIV	GGNNCC	2 cut(s)	176, 582
NspI	RCATGY	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	212, 420
PkrI	GCNGC	2 cut(s)	160, 562
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	176, 582
PspPI	GGNCC	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	174, 331
PvuI	CGATCG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	266
SatI	GCNGC	2 cut(s)	159, 561
Sau3AI	GATC	4 cut(s)	174, 289, 331, 338
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	267, 298
SfaNI	GCATC	3 cut(s)	326, 334, 471
SfcI	CTRYAG	1 cut(s)	445
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	418
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	266, 566
SmoI	CTYRAG	2 cut(s)	266, 566
Sse9I	AATT	5 cut(s)	35, 285, 323, 350, 524
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	267
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	267, 418
TasI	AATT	5 cut(s)	35, 285, 323, 350, 524
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	2 cut(s)	212, 420
TseI	GCWGC	2 cut(s)	158, 560
TspDTI	ATGAA	6 cut(s)	95, 108, 135, 153, 408, 567
TspGWI	ACGGA	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.