FvH4_3g05410

Dephospho-CoA kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3137290 .. 3138599
1310 bp
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UTR
Exon/CDS
Intron
FvH4_3g05410.t1

Sequence Viewer

Length: 300 bp
ATGAGAAGATTAAGAGTGTTGGGGAGCGCTATTGCTGGTTACTGGGTTCTCTTGAAAGAAACAGCCCATGACATTCATGTTGTCGACGCTGACCTTGTGGCTCGGGATGTATTGAAGAAAGGAACTGATGGATGGAAAAAGGTTGTTTCAGCATTTGGACAGGACATTCTACAACCTGATGGAGAAGTTGATAGGCCTAAACTAGGCCAAATTGTGTTCTCTAATCCTGAAAAGCGTCAACTTTTGAACCGACTACTGGCTCCTTACATATCATCGTGGAATCTTTTAGAAAATTTCTAA

Protein Analysis

100

Amino Acids

11.21

Weight (kDa)

9.1

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CoaE PF01121 22 - 92 5.4e-20 Dephospho-CoA kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 292
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 203, 256
AgsI TTSAA 3 cut(s) 55, 115, 247
Ama87I CYCGRG 1 cut(s) 102
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 2 cut(s) 194, 205
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 102
BccI CCATC 3 cut(s) 122, 126, 173
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 256
Bse1I ACTGG 2 cut(s) 47, 261
BseGI GGATG 2 cut(s) 112, 137
BseLI CCNNNNNNNGG 2 cut(s) 203, 256
BseNI ACTGG 2 cut(s) 47, 261
BshFI GGCC 2 cut(s) 196, 207
BsiHKCI CYCGRG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 203, 256
BsnI GGCC 2 cut(s) 196, 207
BsoBI CYCGRG 1 cut(s) 102
BspANI GGCC 2 cut(s) 196, 207
BspLI GGNNCC 1 cut(s) 261
BsrI ACTGG 2 cut(s) 47, 261
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 112, 137
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 196, 207
BtsCI GGATG 2 cut(s) 112, 137
CfoI GCGC 1 cut(s) 29
CseI GACGC 2 cut(s) 95, 224
CviAII CATG 2 cut(s) 68, 77
CviJI RGCY 5 cut(s) 65, 101, 196, 207, 260
CviKI_1 RGCY 5 cut(s) 65, 101, 196, 207, 260
Eco147I AGGCCT 1 cut(s) 196
Eco47III AGCGCT 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 201
FaeI CATG 2 cut(s) 71, 80
FaiI YATR 3 cut(s) 69, 78, 269
FatI CATG 2 cut(s) 67, 76
FblI GTMKAC 1 cut(s) 84
FokI GGATG 2 cut(s) 119, 144
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 196, 207
HgaI GACGC 2 cut(s) 95, 224
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 71, 80
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 85, 239
HindII GTYRAC 2 cut(s) 85, 239
HinfI GANTC 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 85, 239
Hpy188III TCNNGA 3 cut(s) 52, 104, 227
Hpy8I GTNNAC 2 cut(s) 85, 239
Hpy99I CGWCG 1 cut(s) 89
Hsp92II CATG 2 cut(s) 71, 80
HspAI GCGC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 24, 265
LpnPI CCDG 6 cut(s) 21, 28, 146, 189, 240, 242
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 38
MboII GAAGA 2 cut(s) 18, 127
MluCI AATT 2 cut(s) 210, 292
MseI TTAA 1 cut(s) 11
NlaIII CATG 2 cut(s) 71, 80
NlaIV GGNNCC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 196
PfeI GAWTC 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 11
SetI ASST 3 cut(s) 96, 144, 178
Sse9I AATT 2 cut(s) 210, 292
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 1 cut(s) 196
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 210, 292
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 201
XapI RAATTY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.