Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

43362152 .. 43365050

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG343200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTACAGAGGATCACACAACCCTTTGACCATAAGAAGAATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCTCATGACATTCCTGTTGTCGATGCTGATCTTGTGGCTCGTGATATATTGAAGAAGGGAACTAGTGGATGGAAAAAGGTTGTTTCAGCATTTGGGCAGGGTGTTTTGCTACCTGATGGAGAAGTTGATAGACCTAAACTAGGACAAATTGTATTCTCTAATCCCGAAAAGCGTCAACTTTTGAACCGACTACTGGCCCCTTACATATCATCTGGAATCTTTTGGGAAATTTGGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATTGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTTGAGGGACAGAACAAGTGAGAATGATGCTCGAAAACGGATAAATGCTCAAGTGTCACTCGATTTAAAGAGGACCATGGCAGACATTGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAAAACTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAACTTTGGCTTTCTCGCCAAGGTGCTTCATCTGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGATAGTAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

248

Amino Acids

28.09

Weight (kDa)

9.92

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	16 - 194	3.3e-58	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	726, 745
AclWI	GGATC	3 cut(s)	19, 437, 583
AcsI	RAATTY	1 cut(s)	333
AfaI	GTAC	2 cut(s)	5, 85
AfiI	CCNNNNNNNGG	3 cut(s)	245, 298, 639
AgsI	TTSAA	4 cut(s)	103, 157, 289, 352
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	2 cut(s)	343, 457
AluI	AGCT	2 cut(s)	343, 457
Alw26I	GTCTC	3 cut(s)	94, 457, 691
AlwI	GGATC	3 cut(s)	19, 437, 583
AoxI	GGCC	2 cut(s)	300, 396
ApoI	RAATTY	1 cut(s)	333
AspS9I	GGNCC	3 cut(s)	301, 414, 543
AvaII	GGWCC	2 cut(s)	414, 543
BauI	CACGAG	1 cut(s)	144
BccI	CCATC	3 cut(s)	168, 215, 405
BcoDI	GTCTC	3 cut(s)	94, 457, 691
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	2 cut(s)	168, 245
BmcAI	AGTACT	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	414, 543
BmgT120I	GGNCC	3 cut(s)	301, 414, 543
BmiI	GGNNCC	1 cut(s)	303
BmsI	GCATC	2 cut(s)	118, 487
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	546, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 298, 639
Bse1I	ACTGG	2 cut(s)	303, 577
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	546, 664
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	245, 298, 639
BseNI	ACTGG	2 cut(s)	303, 577
BshFI	GGCC	2 cut(s)	302, 398
BslFI	GGGAC	3 cut(s)	66, 365, 491
BslI	CCNNNNNNNGG	3 cut(s)	245, 298, 639
BsmAI	GTCTC	3 cut(s)	94, 457, 691
BsmFI	GGGAC	3 cut(s)	66, 365, 491
BsnI	GGCC	2 cut(s)	302, 398
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	11, 133, 442, 575
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	2 cut(s)	302, 398
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	19, 437, 583
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	303, 577
BssECI	CCNNGG	2 cut(s)	546, 664
BssMI	GATC	4 cut(s)	11, 133, 442, 575
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	546, 664
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	88, 610
Bst6I	CTCTTC	2 cut(s)	74, 104
BstAUI	TGTACA	1 cut(s)	3
BstDSI	CCRYGG	1 cut(s)	546
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	14, 136, 445, 578
BstMAI	GTCTC	3 cut(s)	94, 457, 691
BstMBI	GATC	4 cut(s)	11, 133, 442, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BsuRI	GGCC	2 cut(s)	302, 398
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	570
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	301, 414, 543
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	4, 84
CviAII	CATG	4 cut(s)	110, 469, 547, 639
CviJI	RGCY	9 cut(s)	107, 143, 302, 343, 398, 421, 457, 631, 655
CviKI_1	RGCY	9 cut(s)	107, 143, 302, 343, 398, 421, 457, 631, 655
CviQI	GTAC	2 cut(s)	4, 84
DpnI	GATC	4 cut(s)	13, 135, 444, 577
DpnII	GATC	4 cut(s)	11, 133, 442, 575
DraI	TTTAAA	3 cut(s)	537, 591, 604
Eam1104I	CTCTTC	2 cut(s)	74, 104
EarI	CTCTTC	2 cut(s)	74, 104
Eco130I	CCWWGG	2 cut(s)	546, 664
Eco47I	GGWCC	2 cut(s)	414, 543
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	546, 664
ErhI	CCWWGG	2 cut(s)	546, 664
FaeI	CATG	4 cut(s)	113, 472, 550, 642
FaqI	GGGAC	3 cut(s)	66, 365, 491
FatI	CATG	4 cut(s)	109, 468, 546, 638
FokI	GGATG	1 cut(s)	186
FspBI	CTAG	2 cut(s)	168, 245
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	302, 398
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	113, 472, 550, 642
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HinfI	GANTC	2 cut(s)	321, 465
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	716
Hpy188III	TCNNGA	7 cut(s)	110, 146, 269, 318, 374, 446, 460
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	154, 346
HpyCH4III	ACNGT	2 cut(s)	88, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
Hsp92II	CATG	4 cut(s)	113, 472, 550, 642
Kzo9I	GATC	4 cut(s)	11, 133, 442, 575
LmnI	GCTCC	1 cut(s)	462
LweI	GCATC	2 cut(s)	118, 487
MaeI	CTAG	2 cut(s)	168, 245
MaeIII	GTNAC	2 cut(s)	525, 622
MalI	GATC	4 cut(s)	13, 135, 444, 577
MboI	GATC	4 cut(s)	11, 133, 442, 575
MboII	GAAGA	4 cut(s)	48, 91, 91, 169
MluCI	AATT	3 cut(s)	252, 333, 740
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	36, 388, 393, 468, 534, 577, 613
MseI	TTAA	4 cut(s)	360, 536, 590, 603
MwoI	GCNNNNNNNGC	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	11, 133, 442, 575
NlaIII	CATG	4 cut(s)	113, 472, 550, 642
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	525, 622
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	321
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PsiI	TTATAA	2 cut(s)	726, 745
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	301, 414, 543
RsaI	GTAC	2 cut(s)	5, 85
RsaNI	GTAC	2 cut(s)	4, 84
SaqAI	TTAA	4 cut(s)	360, 536, 590, 603
Sau3AI	GATC	4 cut(s)	11, 133, 442, 575
Sau96I	GGNCC	3 cut(s)	301, 414, 543
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	1 cut(s)	459
SetI	ASST	9 cut(s)	186, 220, 241, 345, 366, 459, 624, 670, 703
SfaNI	GCATC	2 cut(s)	118, 487
SinI	GGWCC	2 cut(s)	414, 543
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	3 cut(s)	252, 333, 740
SspMI	CTAG	2 cut(s)	168, 245
StyI	CCWWGG	2 cut(s)	546, 664
TaaI	ACNGT	2 cut(s)	88, 610
TaqI	TCGA	5 cut(s)	126, 393, 441, 502, 531
TasI	AATT	3 cut(s)	252, 333, 740
TatI	WGTACW	2 cut(s)	3, 83
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	4 cut(s)	360, 536, 590, 603
Tru9I	TTAA	4 cut(s)	360, 536, 590, 603
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	525, 622
Tsp45I	GTSAC	2 cut(s)	525, 622
TspDTI	ATGAA	2 cut(s)	60, 663
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	414, 543
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	333
XspI	CTAG	2 cut(s)	168, 245
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.