Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

22452981 .. 22454284

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGGATAGTGGGGTTGACAGGTGGAATTGCTTCCGGGAAGAGCACCGTCTCGAATCTCTTCAAGGAACATGGCATTCCAGTCGCTGATGCCGATCTTGTTGCTCGAGATGTGTTGAAGAAGGGCACTGGTGGCTGGAAAAACGTTGTTTCAGCATTTGGAGATGACATTTTGCAACCTGATGGAGAAGTTGATAGGCCTAAACTGGGACAAATTGTGTTCTCTAATCCAGAAAAGCGCCAACTTCTTAACCGACTGCTAGCTCCTTATATATCGTCTGGAATCTTTTGGGAAATTTTGAAGCTATGGATGAAGGGGTGTAATGTTATTGTTCTTGATGTTCCTCTGTTGTTCGAGGCCAAGATGGACAAATGGACAAAGCCTATTGTTGTTGTATGGGTTGATCCTGAAACGCAGCTCCGGAGACTCATGTCGAGGGACAGAACAAGTGAGGAGGATGCTGGAAACAGGATAAATGCTCAGATGTCACTCGACATAAAACGGACCAGGGCAGACATAGTGGTTGATAACAATGGATCACTAGAAGATTTAAGAGTACAGTTCCGCAACGTCTTACTTGAGGTCACAAAGCCCTTAACATGGACCGAATTTGGGCTTTCTAGACAAGGTGCCTCGTCCGTTCTTGTCTCCATTATCGTAGGTGTTCTTATATTCAAGAAAGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

230

Amino Acids

25.51

Weight (kDa)

9.21

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	1 cut(s)	565
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	2 cut(s)	398, 544
AcsI	RAATTY	2 cut(s)	294, 608
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	206, 600, 612
AgsI	TTSAA	4 cut(s)	64, 118, 301, 676
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	3 cut(s)	263, 304, 418
AluI	AGCT	3 cut(s)	263, 304, 418
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	3 cut(s)	55, 418, 652
AlwI	GGATC	2 cut(s)	398, 544
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	2 cut(s)	197, 357
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	294, 608
Asp700I	GAANNNNTTC	2 cut(s)	31, 59
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	504, 603
AsuC2I	CCSGG	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	504, 603
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	2 cut(s)	176, 358
BcgI	CGANNNNNNTGC	4 cut(s)	64, 83, 98, 117
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	55, 418, 652
BfaI	CTAG	3 cut(s)	260, 542, 621
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	37, 508
Bme18I	GGWCC	2 cut(s)	504, 603
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	504, 603
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	37, 508
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	79, 448
BmtI	GCTAGC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	215
BoxI	GACNNNNGTC	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 600, 612
Bse1I	ACTGG	3 cut(s)	80, 133, 210
Bse8I	GATNNNNATC	1 cut(s)	93
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	315, 463
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	206, 600, 612
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	3 cut(s)	80, 133, 210
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	427
BshFI	GGCC	2 cut(s)	199, 359
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	36, 421
BslFI	GGGAC	2 cut(s)	222, 452
BslI	CCNNNNNNNGG	3 cut(s)	206, 600, 612
BsmAI	GTCTC	3 cut(s)	55, 418, 652
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	222, 452
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	199, 359
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	47, 128
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	94, 403, 536
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	2 cut(s)	199, 359
BspCNI	CTCAG	1 cut(s)	493
BspEI	TCCGGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	631
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	398, 544
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	80, 133, 210
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	94, 403, 536
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	49, 561
Bst6I	CTCTTC	2 cut(s)	35, 65
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	315, 463
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	3 cut(s)	97, 406, 539
BstMAI	GTCTC	3 cut(s)	55, 418, 652
BstMBI	GATC	3 cut(s)	94, 403, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	508
BstPAI	GACNNNNGTC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	35, 506
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	199, 359
BtsCI	GGATG	2 cut(s)	315, 463
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	504, 603
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	3 cut(s)	71, 430, 600
CviJI	RGCY	9 cut(s)	135, 199, 263, 304, 359, 382, 418, 592, 616
CviKI_1	RGCY	9 cut(s)	135, 199, 263, 304, 359, 382, 418, 592, 616
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	96, 405, 538
DpnII	GATC	3 cut(s)	94, 403, 536
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	504, 603
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	74, 433, 603
FaqI	GGGAC	2 cut(s)	222, 452
FatI	CATG	3 cut(s)	70, 429, 599
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	2 cut(s)	322, 470
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	3 cut(s)	260, 542, 621
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	199, 359
HapII	CCGG	2 cut(s)	36, 421
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	74, 433, 603
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	55, 282, 426
HpaII	CCGG	2 cut(s)	36, 421
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	9 cut(s)	52, 107, 230, 279, 335, 407, 421, 621, 676
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	2 cut(s)	49, 561
HpyCH4IV	ACGT	2 cut(s)	144, 570
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	2 cut(s)	144, 570
Hsp92II	CATG	3 cut(s)	74, 433, 603
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	94, 403, 536
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	268, 423
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	79, 448
MaeI	CTAG	3 cut(s)	260, 542, 621
MaeII	ACGT	2 cut(s)	144, 570
MaeIII	GTNAC	2 cut(s)	486, 583
MalI	GATC	3 cut(s)	96, 405, 538
MboI	GATC	3 cut(s)	94, 403, 536
MboII	GAAGA	4 cut(s)	52, 52, 130, 557
MhlI	GDGCHC	2 cut(s)	47, 128
MluCI	AATT	4 cut(s)	27, 213, 294, 608
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	7 cut(s)	349, 354, 429, 445, 448, 574, 643
MroI	TCCGGA	1 cut(s)	420
MroXI	GAANNNNTTC	2 cut(s)	31, 59
MseI	TTAA	3 cut(s)	249, 551, 596
MspI	CCGG	2 cut(s)	36, 421
MspR9I	CCNGG	2 cut(s)	37, 508
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	94, 403, 536
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	74, 433, 603
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	2 cut(s)	486, 583
PaeR7I	CTCGAG	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	31, 59
PfeI	GAWTC	2 cut(s)	55, 282
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	688
Psp1406I	AACGTT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	504, 603
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	249, 551, 596
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	94, 403, 536
Sau96I	GGNCC	2 cut(s)	504, 603
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	37, 508
SduI	GDGCHC	2 cut(s)	47, 128
SfaNI	GCATC	2 cut(s)	79, 448
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	504, 603
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	105, 578
SmoI	CTYRAG	2 cut(s)	105, 578
Sse9I	AATT	4 cut(s)	27, 213, 294, 608
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	565
SspMI	CTAG	3 cut(s)	260, 542, 621
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	2 cut(s)	35, 506
TaaI	ACNGT	2 cut(s)	49, 561
TaiI	ACGT	2 cut(s)	147, 573
TaqI	TCGA	5 cut(s)	53, 106, 354, 434, 492
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	4 cut(s)	27, 213, 294, 608
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	55, 282
Tru1I	TTAA	3 cut(s)	249, 551, 596
Tru9I	TTAA	3 cut(s)	249, 551, 596
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	486, 583
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	2 cut(s)	486, 583
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	2 cut(s)	517, 628
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	504, 603
XapI	RAATTY	2 cut(s)	294, 608
XbaI	TCTAGA	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	105
XmnI	GAANNNNTTC	2 cut(s)	31, 59
XspI	CTAG	3 cut(s)	260, 542, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.