Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

13688547 .. 13689031

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCCATGAAATTCATGTTCTTGACGCCGATCTGGTGGCTTGTGATGTATTGAAGAAGGGAACTGGTGGATGGAAAAAGTCAGCATTTGGACAGGGCATTTTGCTACCTGATGGAAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATATCCCTCTGTTGTTCGAGGCCAAGATGGACACATGGAGAAAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCAAGTGTAAAAACCATATACATGCTCACAACATATGCATACAAGTTTTGACAACAATCACAAAAGAACTAAAGTTTACCTTCAGCAATCATAGGCATGGAGTCCATCTCTGTAGCTGCAAACACGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

125

Amino Acids

14.26

Weight (kDa)

9.04

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	47 - 104	2.9e-09	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	55, 130
AluBI	AGCT	3 cut(s)	121, 235, 360
AluI	AGCT	3 cut(s)	121, 235, 360
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	3, 174
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	4 cut(s)	66, 107, 175, 357
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	5, 176
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	5, 176
Bsp143I	GATC	3 cut(s)	31, 220, 370
BspANI	GGCC	2 cut(s)	5, 176
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	31, 220, 370
BssNI	GRCGYC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	34, 223, 373
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	31, 220, 370
BstNSI	RCATGY	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	5, 176
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	35
CviAII	CATG	5 cut(s)	8, 17, 189, 266, 341
CviJI	RGCY	7 cut(s)	5, 41, 121, 176, 199, 235, 360
CviKI_1	RGCY	7 cut(s)	5, 41, 121, 176, 199, 235, 360
DpnI	GATC	3 cut(s)	33, 222, 372
DpnII	GATC	3 cut(s)	31, 220, 370
Eco32I	GATATC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	284
FaeI	CATG	5 cut(s)	11, 20, 192, 269, 344
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	5 cut(s)	7, 16, 188, 265, 340
FauNDI	CATATG	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	5, 176
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	11, 20, 192, 269, 344
HinfI	GANTC	2 cut(s)	243, 345
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188III	TCNNGA	4 cut(s)	23, 152, 224, 238
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	52, 124, 334
HpyCH4V	TGCA	2 cut(s)	282, 363
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	11, 20, 192, 269, 344
Kzo9I	GATC	3 cut(s)	31, 220, 370
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	20, 51, 80, 123, 237, 251
Lsp1109I	GCAGC	1 cut(s)	347
MalI	GATC	3 cut(s)	33, 222, 372
MboI	GATC	3 cut(s)	31, 220, 370
MboII	GAAGA	1 cut(s)	67
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	237, 354
MnlI	CCTC	2 cut(s)	166, 171
Mph1103I	ATGCAT	1 cut(s)	284
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	264, 339
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	3 cut(s)	31, 220, 370
NlaIII	CATG	5 cut(s)	11, 20, 192, 269, 344
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	362
PleI	GAGTC	2 cut(s)	237, 353
PpsI	GAGTC	2 cut(s)	237, 353
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	264, 339
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	31, 220, 370
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	237, 354
SetI	ASST	6 cut(s)	112, 123, 144, 237, 326, 362
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	264, 339
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	171, 219
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	5, 24
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.