Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

54984443 .. 54985556

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCGTCTGGGAAGAGCACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCCGATCTTGTGGCTCGAGATGTATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACAGGGCATTTTGCAACCTGATGGAGAAGTTGATAGGCCTAAACTAGGGCAAATTGTATTCTCTAATCCCGAGAAGCGTCAACTTTTGAATCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGCAATTTCGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTTGAGGCCAAGATGGACAGATGGACAAAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTCGAGGGACAGAACAAGTGAGGATGATGCTCGAAACAGAATAAATGCTCAGATGTCACTTGATTTAAAGAGGACTAAGGCAGACATAGTGATTGATAACACTGGATCACAAGAGGATTTGAAAGAGAAGTTTAAGAGTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAATTTTGGCTTTCTCGACAAGGTGCTTCATCTGCTCTTGTCTCCATTATCATAGGTGTTCTTTTGTTCAGAAAAGTTTATAACAGTGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

9.72

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 181	1.1e-59	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AclWI	GGATC	2 cut(s)	398, 544
AcsI	RAATTY	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	206, 600
AgsI	TTSAA	5 cut(s)	64, 118, 250, 313, 553
AluBI	AGCT	2 cut(s)	304, 418
AluI	AGCT	2 cut(s)	304, 418
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	3 cut(s)	55, 418, 652
AlwI	GGATC	2 cut(s)	398, 544
Ama87I	CYCGRG	2 cut(s)	105, 230
AoxI	GGCC	3 cut(s)	66, 197, 357
ApoI	RAATTY	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	299
AvaI	CYCGRG	2 cut(s)	105, 230
Bbv12I	GWGCWC	1 cut(s)	47
BccI	CCATC	4 cut(s)	129, 176, 358, 366
BcoDI	GTCTC	3 cut(s)	55, 418, 652
BfaI	CTAG	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	105, 230
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 600
Bse1I	ACTGG	3 cut(s)	133, 264, 538
BseGI	GGATG	2 cut(s)	140, 460
BseLI	CCNNNNNNNGG	2 cut(s)	206, 600
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	3 cut(s)	133, 264, 538
BshFI	GGCC	3 cut(s)	68, 199, 359
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	105, 230
BslFI	GGGAC	3 cut(s)	27, 326, 452
BslI	CCNNNNNNNGG	2 cut(s)	206, 600
BsmAI	GTCTC	3 cut(s)	55, 418, 652
BsmFI	GGGAC	3 cut(s)	27, 326, 452
BsnI	GGCC	3 cut(s)	68, 199, 359
BsoBI	CYCGRG	2 cut(s)	105, 230
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	94, 403, 536
BspANI	GGCC	3 cut(s)	68, 199, 359
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	398, 544
BspQI	GCTCTTC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	133, 264, 538
BssMI	GATC	3 cut(s)	94, 403, 536
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	49, 692
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	480, 507
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	140, 460
BstKTI	GATC	3 cut(s)	97, 406, 539
BstMAI	GTCTC	3 cut(s)	55, 418, 652
BstMBI	GATC	3 cut(s)	94, 403, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstPAI	GACNNNNGTC	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	68, 199, 359
BtsCI	GGATG	2 cut(s)	140, 460
BtsIMutI	CAGTG	3 cut(s)	45, 531, 697
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	2 cut(s)	98, 227
CviAII	CATG	3 cut(s)	71, 430, 600
DdeI	CTNAG	2 cut(s)	480, 507
DpnI	GATC	3 cut(s)	96, 405, 538
DpnII	GATC	3 cut(s)	94, 403, 536
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	105, 230
EcoNI	CCTNNNNNAGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	74, 433, 603
FaqI	GGGAC	3 cut(s)	27, 326, 452
FatI	CATG	3 cut(s)	70, 429, 599
FokI	GGATG	2 cut(s)	147, 467
FspBI	CTAG	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	68, 199, 359
HgaI	GACGC	2 cut(s)	98, 227
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	74, 433, 603
HincII	GTYRAC	2 cut(s)	88, 242
HindII	GTYRAC	2 cut(s)	88, 242
HinfI	GANTC	3 cut(s)	250, 282, 426
Hpy166II	GTNNAC	2 cut(s)	88, 242
Hpy188I	TCNGA	2 cut(s)	483, 677
Hpy188III	TCNNGA	7 cut(s)	107, 230, 279, 335, 407, 421, 621
Hpy8I	GTNNAC	2 cut(s)	88, 242
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	2 cut(s)	49, 692
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	480, 507
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	74, 433, 603
Kzo9I	GATC	3 cut(s)	94, 403, 536
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	268, 423
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	486, 583
MalI	GATC	3 cut(s)	96, 405, 538
MboI	GATC	3 cut(s)	94, 403, 536
MboII	GAAGA	3 cut(s)	52, 52, 130
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	213, 294, 608, 701
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	7 cut(s)	349, 354, 429, 445, 495, 538, 574
MseI	TTAA	3 cut(s)	321, 497, 564
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	3 cut(s)	94, 403, 536
NlaIII	CATG	3 cut(s)	74, 433, 603
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	486, 583
NspV	TTCGAA	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	250, 282
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	321, 497, 564
Sau3AI	GATC	3 cut(s)	94, 403, 536
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	8 cut(s)	147, 181, 306, 327, 420, 585, 631, 664
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	213, 294, 608, 701
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	49, 692
TaqI	TCGA	7 cut(s)	106, 253, 299, 402, 434, 463, 622
TasI	AATT	4 cut(s)	213, 294, 608, 701
TfiI	GAWTC	2 cut(s)	250, 282
Tru1I	TTAA	3 cut(s)	321, 497, 564
Tru9I	TTAA	3 cut(s)	321, 497, 564
TscAI	CASTG	3 cut(s)	52, 538, 697
TseFI	GTSAC	2 cut(s)	486, 583
Tsp45I	GTSAC	2 cut(s)	486, 583
TspDTI	ATGAA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	52, 538, 697
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	105
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.