Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

24826428 .. 24828716

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCCAATCTTGTGGCTCATGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGCTGTTTCAGCATTTGGACAGGGTATTTTGCAACCTGATGATGGAGAAGTTGATGGGCCTAAACTAGGGCAAATCGTATTCTCTAATCTCGAAAAGCGTCAATTTTTGATAGGGCTGGGCACGGTCCCAGACCGGCACCACATTTACAGGGATCGGGACCGGGACCGGACCGGCAGAGTTAAGCTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTAAGGTTGAAGGGGTTTAAGGTTATTGTCCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAACCTGTTATTGTTGTATGGGGACAGGATGATGCTCGAAACTGGATAAATGCTCAGGTGTCACTCGATTTAAGGAGGACCATGGCAGACATGGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAGAAGTGTGGTATTTGAGGTCACAAAGCCCTTGTCATGGACTGAACTTTGGCTTTCTCACCAAGGTGCTTCATCTGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGACAGTAAATTACAGCAACCTTGGAGTTGTAAACAAGTCGACTCAAAATATGACTGCCTTAAATTCAGATTTTACTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

266

Amino Acids

30.06

Weight (kDa)

9.41

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 84	7.3e-22	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	756
AclWI	GGATC	2 cut(s)	303, 568
AcsI	RAATTY	2 cut(s)	366, 779
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	185, 209, 624
AgsI	TTSAA	4 cut(s)	64, 118, 373, 385
AleI	CACNNNNGTG	1 cut(s)	651
AluBI	AGCT	2 cut(s)	328, 376
AluI	AGCT	2 cut(s)	328, 376
Alw26I	GTCTC	2 cut(s)	55, 676
AlwI	GGATC	2 cut(s)	303, 568
AoxI	GGCC	3 cut(s)	66, 200, 429
ApoI	RAATTY	2 cut(s)	366, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspS9I	GGNCC	8 cut(s)	67, 200, 268, 301, 307, 312, 447, 528
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	556, 638
AvaII	GGWCC	6 cut(s)	268, 301, 307, 312, 447, 528
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	279
BccI	CCATC	5 cut(s)	129, 179, 191, 430, 438
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	55, 676
BfaI	CTAG	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	6 cut(s)	268, 301, 307, 312, 447, 528
BmgT120I	GGNCC	8 cut(s)	67, 200, 268, 301, 307, 312, 447, 528
BmiI	GGNNCC	5 cut(s)	270, 281, 302, 308, 336
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	472
Bpu10I	CCTNAGC	2 cut(s)	377, 504
BpuMI	CCSGG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	531, 649, 737
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 209, 624
Bse118I	RCCGGY	2 cut(s)	276, 314
Bse1I	ACTGG	4 cut(s)	133, 336, 497, 562
BseDI	CCNNGG	3 cut(s)	531, 649, 737
BseGI	GGATG	2 cut(s)	140, 484
BseLI	CCNNNNNNNGG	3 cut(s)	185, 209, 624
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	4 cut(s)	133, 336, 497, 562
BseSI	GKGCMC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	3 cut(s)	68, 202, 431
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	4 cut(s)	277, 304, 310, 315
BslFI	GGGAC	6 cut(s)	27, 254, 314, 320, 398, 486
BslI	CCNNNNNNNGG	3 cut(s)	185, 209, 624
BsmAI	GTCTC	2 cut(s)	55, 676
BsmFI	GGGAC	6 cut(s)	27, 254, 314, 320, 398, 486
BsnI	GGCC	3 cut(s)	68, 202, 431
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	295, 560
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	3 cut(s)	68, 202, 431
BspCNI	CTCAG	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	5 cut(s)	270, 281, 302, 308, 336
BspPI	GGATC	2 cut(s)	303, 568
BspT107I	GGYRCC	1 cut(s)	279
BsrFI	RCCGGY	2 cut(s)	276, 314
BsrI	ACTGG	4 cut(s)	133, 336, 497, 562
BssAI	RCCGGY	2 cut(s)	276, 314
BssECI	CCNNGG	3 cut(s)	531, 649, 737
BssMI	GATC	2 cut(s)	295, 560
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	3 cut(s)	531, 649, 737
Bst4CI	ACNGT	3 cut(s)	49, 268, 722
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	377, 504
BstDSI	CCRYGG	1 cut(s)	531
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	140, 484
BstKTI	GATC	2 cut(s)	298, 563
BstMAI	GTCTC	2 cut(s)	55, 676
BstMBI	GATC	2 cut(s)	295, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 662
BstSCI	CCNGG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	68, 202, 431
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	140, 484
BtsIMutI	CAGTG	1 cut(s)	555
CciI	TCATGA	1 cut(s)	106
Cfr10I	RCCGGY	2 cut(s)	276, 314
Cfr13I	GGNCC	8 cut(s)	67, 200, 268, 301, 307, 312, 447, 528
CpoI	CGGWCCG	1 cut(s)	312
CseI	GACGC	2 cut(s)	98, 230
Csp6I	GTAC	1 cut(s)	45
CspI	CGGWCCG	1 cut(s)	312
CviAII	CATG	5 cut(s)	71, 107, 532, 541, 624
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	377, 504
DpnI	GATC	2 cut(s)	297, 562
DpnII	GATC	2 cut(s)	295, 560
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	3 cut(s)	531, 649, 737
Eco47I	GGWCC	6 cut(s)	268, 301, 307, 312, 447, 528
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoT14I	CCWWGG	3 cut(s)	531, 649, 737
ErhI	CCWWGG	3 cut(s)	531, 649, 737
FaeI	CATG	5 cut(s)	74, 110, 535, 544, 627
FaqI	GGGAC	6 cut(s)	27, 254, 314, 320, 398, 486
FatI	CATG	5 cut(s)	70, 106, 531, 540, 623
FblI	GTMKAC	1 cut(s)	756
FokI	GGATG	2 cut(s)	147, 491
FspBI	CTAG	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	68, 202, 431
HapII	CCGG	4 cut(s)	277, 304, 310, 315
HgaI	GACGC	2 cut(s)	98, 230
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	74, 110, 535, 544, 627
HincII	GTYRAC	2 cut(s)	88, 757
HindII	GTYRAC	2 cut(s)	88, 757
HinfI	GANTC	2 cut(s)	354, 758
HpaII	CCGG	4 cut(s)	277, 304, 310, 315
HphI	GGTGA	2 cut(s)	556, 638
Hpy166II	GTNNAC	3 cut(s)	88, 749, 757
Hpy188I	TCNGA	2 cut(s)	701, 785
Hpy188III	TCNNGA	4 cut(s)	107, 233, 299, 351
Hpy8I	GTNNAC	3 cut(s)	88, 749, 757
HpyAV	CCTTC	2 cut(s)	115, 379
HpyCH4III	ACNGT	3 cut(s)	49, 268, 722
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 662
HpyF3I	CTNAG	2 cut(s)	377, 504
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	74, 110, 535, 544, 627
Kzo9I	GATC	2 cut(s)	295, 560
LmnI	GCTCC	1 cut(s)	340
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	510, 607, 716
MalI	GATC	2 cut(s)	297, 562
MboI	GATC	2 cut(s)	295, 560
MboII	GAAGA	3 cut(s)	52, 52, 130
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	4 cut(s)	245, 366, 725, 779
MlyI	GAGTC	1 cut(s)	752
MnlI	CCTC	5 cut(s)	421, 426, 519, 562, 598
MseI	TTAA	5 cut(s)	324, 393, 521, 575, 777
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	4 cut(s)	277, 304, 310, 315
MspR9I	CCNGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	152, 662
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	295, 560
NlaIII	CATG	5 cut(s)	74, 110, 535, 544, 627
NlaIV	GGNNCC	5 cut(s)	270, 281, 302, 308, 336
NmuCI	GTSAC	3 cut(s)	510, 607, 716
OliI	CACNNNNGTG	1 cut(s)	651
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	711
PspFI	CCCAGC	1 cut(s)	259
PspN4I	GGNNCC	5 cut(s)	270, 281, 302, 308, 336
PspPI	GGNCC	8 cut(s)	67, 200, 268, 301, 307, 312, 447, 528
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	651
Rsr2I	CGGWCCG	1 cut(s)	312
RsrII	CGGWCCG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	755
SaqAI	TTAA	5 cut(s)	324, 393, 521, 575, 777
Sau3AI	GATC	2 cut(s)	295, 560
Sau96I	GGNCC	8 cut(s)	67, 200, 268, 301, 307, 312, 447, 528
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	6 cut(s)	268, 301, 307, 312, 447, 528
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	4 cut(s)	245, 366, 725, 779
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	3 cut(s)	531, 649, 737
TaaI	ACNGT	3 cut(s)	49, 268, 722
TaqI	TCGA	5 cut(s)	234, 426, 487, 516, 756
TasI	AATT	4 cut(s)	245, 366, 725, 779
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	354
Tru1I	TTAA	5 cut(s)	324, 393, 521, 575, 777
Tru9I	TTAA	5 cut(s)	324, 393, 521, 575, 777
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	3 cut(s)	510, 607, 716
Tsp45I	GTSAC	3 cut(s)	510, 607, 716
TspDTI	ATGAA	2 cut(s)	21, 648
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	6 cut(s)	268, 301, 307, 312, 447, 528
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	2 cut(s)	366, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.