Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

25011111 .. 25013399

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCCAATCTTGTGGCTCATGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGCTGTTTCAGCATTTGGACAGGGTATTTTGCAACCTGATGGGTGCCTTGTAATAAAAATTACATGCCCTATCGACTTTAATGTCTATGTTTTATCTTTTTGCAGGCTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTAAGGTTGAAGGGGTTTAAGGTTATTGTCCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAACCTGTTATTGTTGTATGGGGACAGGATGATGCTCGAAACTGGATAAATGCTCAGGTGTCACTCGATTTAAGGAGGACCATGGCAGACATGGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAGAAGTGTGGTATTTGAGGTCACAAAGCCCTTGTCATGGACTGAACTTTGGCTTTCTCACCAAGGTGCTTCATCTGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGACAGTAAATTACAGCAACCTTGGAGTTGTAAACAAGTCGACTCAAAATATGACTGCCTTAAATTCAGATTTTACTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

240

Amino Acids

27.01

Weight (kDa)

9.15

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 133	1.1e-25	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	678
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	288, 701
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	64, 118, 295, 307
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	55, 598
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	2 cut(s)	66, 351
ApoI	RAATTY	2 cut(s)	288, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspS9I	GGNCC	3 cut(s)	67, 369, 450
AsuHPI	GGTGA	2 cut(s)	478, 560
AvaII	GGWCC	2 cut(s)	369, 450
BanI	GGYRCC	1 cut(s)	186
BccI	CCATC	4 cut(s)	129, 176, 352, 360
BcoDI	GTCTC	2 cut(s)	55, 598
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	369, 450
BmgT120I	GGNCC	3 cut(s)	67, 369, 450
BmiI	GGNNCC	2 cut(s)	188, 258
BmsI	GCATC	1 cut(s)	394
Bpu10I	CCTNAGC	2 cut(s)	299, 426
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	453, 571, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	4 cut(s)	133, 258, 419, 484
BseDI	CCNNGG	3 cut(s)	453, 571, 659
BseGI	GGATG	2 cut(s)	140, 406
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	4 cut(s)	133, 258, 419, 484
BshFI	GGCC	2 cut(s)	68, 353
BshNI	GGYRCC	1 cut(s)	186
BslFI	GGGAC	3 cut(s)	27, 320, 408
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	55, 598
BsmFI	GGGAC	3 cut(s)	27, 320, 408
BsnI	GGCC	2 cut(s)	68, 353
Bsp143I	GATC	1 cut(s)	482
Bsp19I	CCATGG	1 cut(s)	453
BspANI	GGCC	2 cut(s)	68, 353
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	188, 258
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	133, 258, 419, 484
BssECI	CCNNGG	3 cut(s)	453, 571, 659
BssMI	GATC	1 cut(s)	482
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	3 cut(s)	453, 571, 659
Bst4CI	ACNGT	2 cut(s)	49, 644
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	299, 426
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	140, 406
BstKTI	GATC	1 cut(s)	485
BstMAI	GTCTC	2 cut(s)	55, 598
BstMBI	GATC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 584
BstNSI	RCATGY	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 353
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	140, 406
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	248
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	67, 369, 450
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	6 cut(s)	71, 107, 207, 454, 463, 546
CviJI	RGCY	9 cut(s)	68, 104, 146, 250, 257, 298, 353, 538, 562
CviKI_1	RGCY	9 cut(s)	68, 104, 146, 250, 257, 298, 353, 538, 562
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	299, 426
DpnI	GATC	1 cut(s)	484
DpnII	GATC	1 cut(s)	482
DraI	TTTAAA	1 cut(s)	498
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	3 cut(s)	453, 571, 659
Eco47I	GGWCC	2 cut(s)	369, 450
EcoT14I	CCWWGG	3 cut(s)	453, 571, 659
ErhI	CCWWGG	3 cut(s)	453, 571, 659
FaeI	CATG	6 cut(s)	74, 110, 210, 457, 466, 549
FaqI	GGGAC	3 cut(s)	27, 320, 408
FatI	CATG	6 cut(s)	70, 106, 206, 453, 462, 545
FblI	GTMKAC	1 cut(s)	678
FokI	GGATG	2 cut(s)	147, 413
HaeIII	GGCC	2 cut(s)	68, 353
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	74, 110, 210, 457, 466, 549
HincII	GTYRAC	2 cut(s)	88, 679
HindII	GTYRAC	2 cut(s)	88, 679
HinfI	GANTC	2 cut(s)	276, 680
HphI	GGTGA	2 cut(s)	478, 560
Hpy166II	GTNNAC	3 cut(s)	88, 671, 679
Hpy188I	TCNGA	2 cut(s)	623, 707
Hpy188III	TCNNGA	2 cut(s)	107, 273
Hpy8I	GTNNAC	3 cut(s)	88, 671, 679
HpyAV	CCTTC	2 cut(s)	115, 301
HpyCH4III	ACNGT	2 cut(s)	49, 644
HpyCH4V	TGCA	2 cut(s)	175, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 584
HpyF3I	CTNAG	2 cut(s)	299, 426
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	74, 110, 210, 457, 466, 549
Kzo9I	GATC	1 cut(s)	482
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	432, 529, 638
MalI	GATC	1 cut(s)	484
MboI	GATC	1 cut(s)	482
MboII	GAAGA	3 cut(s)	52, 52, 130
MluCI	AATT	4 cut(s)	201, 288, 647, 701
MlyI	GAGTC	1 cut(s)	674
MnlI	CCTC	5 cut(s)	343, 348, 441, 484, 520
MseI	TTAA	5 cut(s)	222, 315, 443, 497, 699
MslI	CAYNNNNRTG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	152, 584
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	1 cut(s)	482
NlaIII	CATG	6 cut(s)	74, 110, 210, 457, 466, 549
NlaIV	GGNNCC	2 cut(s)	188, 258
NmuCI	GTSAC	3 cut(s)	432, 529, 638
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	573
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	188, 258
PspPI	GGNCC	3 cut(s)	67, 369, 450
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	573
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	5 cut(s)	222, 315, 443, 497, 699
Sau3AI	GATC	1 cut(s)	482
Sau96I	GGNCC	3 cut(s)	67, 369, 450
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	674
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	369, 450
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	4 cut(s)	201, 288, 647, 701
StyI	CCWWGG	3 cut(s)	453, 571, 659
TaaI	ACNGT	2 cut(s)	49, 644
TaqI	TCGA	5 cut(s)	216, 348, 409, 438, 678
TasI	AATT	4 cut(s)	201, 288, 647, 701
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	5 cut(s)	222, 315, 443, 497, 699
Tru9I	TTAA	5 cut(s)	222, 315, 443, 497, 699
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	3 cut(s)	432, 529, 638
Tsp45I	GTSAC	3 cut(s)	432, 529, 638
TspDTI	ATGAA	2 cut(s)	21, 570
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	2 cut(s)	369, 450
XapI	RAATTY	2 cut(s)	288, 701
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	678
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.