Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

40994222 .. 40995737

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATTTCTTCAAGGCCCATGACATTCCTGTTATCGACGCCGATCTTGTGGCTCGTGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGGCAGGGTATTTTGCAACCTGATGGAGAAGTTGGTAGACCTAAACTCGGGCAAATTGTATTCTCTAGTCCAAAAAAGCAGCAACTTTTGAACTGGATTGATGTAATAAGCTTTAGGAGGCCAAGACTACTGGCTCCTTATATATCATCTGGAATCTTTTGGGAAATTTGGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGTCCAAGATGGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTTGATCCTAAAACACAGCTCCAGAGACTCATGTTGGGGAACAGAACAAGTGAGAATGATACCCGGATAAATGCTCAGGTGTCACTCGATTTAAAAAGGACCATGGCTGACATAGTGAATGATAACACTGGATCACAAGAGGATTTAAAAGACCAGTTTAAAAGTGTGCTATTTGAGGTCACAAAGCCCTTGTCATGGACTGAACTTTGGCTTTCTCGCCAAGGTGCTTCATCAGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAACAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

241

Amino Acids

27.02

Weight (kDa)

9.91

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 189	2.8e-45	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AccI	GTMKAC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	428, 568
AcsI	RAATTY	2 cut(s)	55, 324
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	46, 718
AfiI	CCNNNNNNNGG	2 cut(s)	206, 624
AgsI	TTSAA	4 cut(s)	64, 118, 250, 343
AluBI	AGCT	4 cut(s)	270, 334, 448, 665
AluI	AGCT	4 cut(s)	270, 334, 448, 665
Alw26I	GTCTC	3 cut(s)	55, 448, 676
AlwI	GGATC	2 cut(s)	428, 568
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	66, 278
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	55, 324
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspS9I	GGNCC	3 cut(s)	67, 405, 528
AsuC2I	CCSGG	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	405, 528
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	4 cut(s)	129, 176, 388, 396
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	55, 448, 676
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	405, 528
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	67, 405, 528
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	531, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 624
Bse1I	ACTGG	5 cut(s)	133, 257, 294, 562, 583
BseDI	CCNNGG	2 cut(s)	531, 649
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	206, 624
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	5 cut(s)	133, 257, 294, 562, 583
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	2 cut(s)	68, 280
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	2 cut(s)	27, 356
BslI	CCNNNNNNNGG	2 cut(s)	206, 624
BsmAI	GTCTC	3 cut(s)	55, 448, 676
BsmFI	GGGAC	2 cut(s)	27, 356
BsnI	GGCC	2 cut(s)	68, 280
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	94, 433, 560
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	2 cut(s)	68, 280
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	428, 568
BsrI	ACTGG	5 cut(s)	133, 257, 294, 562, 583
BssECI	CCNNGG	2 cut(s)	531, 649
BssMI	GATC	3 cut(s)	94, 433, 560
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	531, 649
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	49, 716
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	720
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	97, 436, 563
BstMAI	GTCTC	3 cut(s)	55, 448, 676
BstMBI	GATC	3 cut(s)	94, 433, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	68, 280
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	555
Cfr13I	GGNCC	3 cut(s)	67, 405, 528
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	45, 717
CviAII	CATG	4 cut(s)	71, 460, 532, 624
CviQI	GTAC	2 cut(s)	45, 717
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	96, 435, 562
DpnII	GATC	3 cut(s)	94, 433, 560
DraI	TTTAAA	3 cut(s)	522, 576, 589
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	531, 649
Eco47I	GGWCC	2 cut(s)	405, 528
Eco88I	CYCGRG	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	531, 649
ErhI	CCWWGG	2 cut(s)	531, 649
FaeI	CATG	4 cut(s)	74, 463, 535, 627
FaqI	GGGAC	2 cut(s)	27, 356
FatI	CATG	4 cut(s)	70, 459, 531, 623
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	68, 280
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	74, 463, 535, 627
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	3 cut(s)	312, 386, 456
HpaII	CCGG	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	701
Hpy188III	TCNNGA	4 cut(s)	107, 309, 365, 451
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	115, 337
HpyCH4III	ACNGT	2 cut(s)	49, 716
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	719
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	74, 463, 535, 627
Kzo9I	GATC	3 cut(s)	94, 433, 560
LmnI	GCTCC	2 cut(s)	298, 453
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	2 cut(s)	510, 607
MalI	GATC	3 cut(s)	96, 435, 562
MboI	GATC	3 cut(s)	94, 433, 560
MboII	GAAGA	3 cut(s)	52, 52, 130
MluCI	AATT	3 cut(s)	55, 213, 324
MlyI	GAGTC	2 cut(s)	395, 450
MnlI	CCTC	4 cut(s)	270, 384, 562, 598
MseI	TTAA	4 cut(s)	351, 521, 575, 588
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	662
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	94, 433, 560
NlaIII	CATG	4 cut(s)	74, 463, 535, 627
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	510, 607
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	394, 450
PpsI	GAGTC	2 cut(s)	394, 450
Ppu21I	YACGTR	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	67, 405, 528
RsaI	GTAC	2 cut(s)	46, 718
RsaNI	GTAC	2 cut(s)	45, 717
SaqAI	TTAA	4 cut(s)	351, 521, 575, 588
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	94, 433, 560
Sau96I	GGNCC	3 cut(s)	67, 405, 528
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	395, 450
ScrFI	CCNGG	1 cut(s)	493
SinI	GGWCC	2 cut(s)	405, 528
Sse9I	AATT	3 cut(s)	55, 213, 324
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	2 cut(s)	531, 649
TaaI	ACNGT	2 cut(s)	49, 716
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	3 cut(s)	87, 384, 516
TasI	AATT	3 cut(s)	55, 213, 324
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	4 cut(s)	351, 521, 575, 588
Tru9I	TTAA	4 cut(s)	351, 521, 575, 588
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	510, 607
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	2 cut(s)	510, 607
TspDTI	ATGAA	2 cut(s)	21, 648
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	2 cut(s)	405, 528
XapI	RAATTY	2 cut(s)	55, 324
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	225
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.