Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

27370265 .. 27371026

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGACTTGTTACTTGGTTCCATGTTCAGCAAGAAATCAAATCCTTCCCAATCGAGGCAAGCTATATACTGATGATATTTGAGTTCGTCAAGATCACCGCAAGCCAACGTGAGATTGATCATCCAGGAGACTTTAGTACTTATAATTCTCCGCAATATCATTATTTGCATGATAAAGTATTGAAGGTGAATCCCTTGGTCAATAGGACAGCGATTCTACGGGATTATATTGCTTGGCTTCTTTCCGACTCTATACGTATCACAGAAGATGACCAGTCAGCTATTATTGAAGGAGTATTTAAGGTCCTTGACGACCCCATACGCGAGCTGCCTATTGTTGTTTCTGTGGCAGAAATTACTCTGCACATATTGGATGGGAACGATGATGTCATTGAGAGGGTTGCAACGGAGTCCTTGGAAACATTTACTCCCAAGCTTCTTCCGGCAACTAAATCATCTATTCAAAATTTGGAGAAAGTAGGGCTTGATAGTTTGGAAATAAAATCTACTATGGAACTGACACCCTCTTGTGTTATTTGTATGGAGGGCCTTGATTACTCTGATGATGATGCACCGGATGAAGAGGGGGTAGTTGATCCTGATCATAAACGTCGTGACATCGTGATCACTCGCATGCCATGTTTACATTATTATCATGAAGATTGCATTGTCCGTTGGCTGGAGATCAATCACTGGTGTCCCATTTGCCGATACCCAATGCCAATCGTGGAAATGAGCGGCAGCCATGAAATTGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

253

Amino Acids

29.15

Weight (kDa)

4.68

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	203 - 237	2.7e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	206 - 237	7.7e-09	Ring finger domain
zf-C3HC4_2	PF13923	211 - 236	2.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	738
AccII	CGCG	1 cut(s)	324
AciI	CCGC	3 cut(s)	99, 152, 738
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	55, 679
AgsI	TTSAA	4 cut(s)	184, 290, 464, 755
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	63, 281, 328, 436
AluI	AGCT	4 cut(s)	63, 281, 328, 436
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	328, 741
ApoI	RAATTY	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	304, 547
AsuHPI	GGTGA	2 cut(s)	88, 199
AvaII	GGWCC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	315, 753
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	3 cut(s)	118, 601, 624
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	3 cut(s)	329, 739, 742
BlsI	GCNGC	3 cut(s)	330, 740, 743
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	304, 547
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	701
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	195, 414
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 679
Bse1I	ACTGG	2 cut(s)	274, 698
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	195, 414
BseGI	GGATG	3 cut(s)	121, 379, 583
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	55, 679
BseNI	ACTGG	2 cut(s)	274, 698
BseXI	GCAGC	2 cut(s)	315, 753
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	549
BsiSI	CCGG	2 cut(s)	443, 575
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	55, 679
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	549
Bsp143I	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
BspACI	CCGC	3 cut(s)	99, 152, 738
BspANI	GGCC	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	274, 698
BssECI	CCNNGG	2 cut(s)	195, 414
BssMI	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
BssT1I	CCWWGG	2 cut(s)	195, 414
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	61, 103, 326, 635
BstF5I	GGATG	3 cut(s)	121, 379, 583
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	6 cut(s)	96, 121, 598, 604, 627, 687
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	257
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	315, 753
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	121, 379, 583
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	4 cut(s)	61, 103, 326, 635
CciI	TCATGA	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	304, 547
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	6 cut(s)	23, 170, 634, 639, 656, 746
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	6 cut(s)	95, 120, 597, 603, 626, 686
DpnII	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco105I	TACGTA	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	195, 414
Eco47I	GGWCC	1 cut(s)	304
EcoO109I	RGGNCCY	2 cut(s)	304, 547
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	195, 414
ErhI	CCWWGG	2 cut(s)	195, 414
FaeI	CATG	6 cut(s)	26, 173, 637, 642, 659, 749
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	6 cut(s)	22, 169, 633, 638, 655, 745
FbaI	TGATCA	3 cut(s)	118, 601, 624
Fnu4HI	GCNGC	3 cut(s)	329, 739, 742
FokI	GGATG	3 cut(s)	108, 386, 590
Fsp4HI	GCNGC	3 cut(s)	329, 739, 742
GluI	GCNGC	3 cut(s)	329, 739, 742
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	2 cut(s)	443, 575
Hin1II	CATG	6 cut(s)	26, 173, 637, 642, 659, 749
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	190, 214, 248, 410
HpaII	CCGG	2 cut(s)	443, 575
HphI	GGTGA	2 cut(s)	88, 199
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	2 cut(s)	247, 562
Hpy188III	TCNNGA	5 cut(s)	91, 599, 614, 622, 656
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	55, 178, 284
HpyCH4IV	ACGT	3 cut(s)	109, 256, 610
HpyCH4V	TGCA	5 cut(s)	169, 364, 404, 572, 666
HpySE526I	ACGT	3 cut(s)	109, 256, 610
Hsp92II	CATG	6 cut(s)	26, 173, 637, 642, 659, 749
Ksp22I	TGATCA	3 cut(s)	118, 601, 624
Kzo9I	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
LpnPI	CCDG	8 cut(s)	111, 138, 287, 456, 588, 612, 665, 679
Lsp1109I	GCAGC	2 cut(s)	315, 753
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	3 cut(s)	109, 256, 610
MaeIII	GTNAC	2 cut(s)	10, 614
MalI	GATC	6 cut(s)	95, 120, 597, 603, 626, 686
MbiI	CCGCTC	1 cut(s)	738
MboI	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
MboII	GAAGA	4 cut(s)	278, 431, 593, 671
MluCI	AATT	4 cut(s)	145, 354, 466, 750
MlyI	GAGTC	2 cut(s)	242, 419
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	49, 390, 535, 538, 577
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	2 cut(s)	443, 575
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	324
NdeII	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
NlaIII	CATG	6 cut(s)	26, 173, 637, 642, 659, 749
NlaIV	GGNNCC	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	1 cut(s)	637
PaeI	GCATGC	1 cut(s)	637
PagI	TCATGA	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	190, 214
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	330, 740, 743
PleI	GAGTC	2 cut(s)	242, 418
PpsI	GAGTC	2 cut(s)	242, 418
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	304, 547
PspPPI	RGGWCCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	329, 739, 742
Sau3AI	GATC	6 cut(s)	93, 118, 595, 601, 624, 684
Sau96I	GGNCC	2 cut(s)	304, 547
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	2 cut(s)	242, 419
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	9 cut(s)	65, 112, 189, 259, 283, 306, 330, 438, 613
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	632
SnaBI	TACGTA	1 cut(s)	257
SphI	GCATGC	1 cut(s)	637
Sse9I	AATT	4 cut(s)	145, 354, 466, 750
SsiI	CCGC	3 cut(s)	99, 152, 738
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	195, 414
TaiI	ACGT	3 cut(s)	112, 259, 613
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	145, 354, 466, 750
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	190, 214
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	698
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	328, 741
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	594, 672, 762
TspGWI	ACGGA	2 cut(s)	422, 662
TspRI	CASTG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	637
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.