Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

44548607 .. 44549069

Gene Structure 463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGACTGAGTATAATTACTGGAAGAGTACCGTCTCAAATGCCTTCAAGACCCATGACATTCCTGTTGTTGACGCTGATCTTGTGGCTCATGAAGTATTGAAGAACGGAATTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACGGGGCATTTTGGAAACTGATGGAGAAGTTGATAGGCCTAAGCTAGGGCAAATTGCATTCTCTAATCCTGAAAAACGTCAACTTTTGAATCGACTACTGGCTTCTTACATATCGTTTGGAATCTTTTGGGAAATTTTGAAGCTATTGTGGGTCAAGATGGACAGATGGATGGAGCCCATTATTGTTGTATGGGTCGATCCTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

118

Amino Acids

13.61

Weight (kDa)

6.73

Isoelectric Point (pI)

22.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	9 - 97	6.2e-21	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	49, 103, 235, 286
AluBI	AGCT	2 cut(s)	190, 289
AluI	AGCT	2 cut(s)	190, 289
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	5 cut(s)	114, 161, 298, 306, 310
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	26, 249
BseGI	GGATG	2 cut(s)	125, 321
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	26, 249
BshFI	GGCC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	40
BsmBI	CGTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	79, 343
BspANI	GGCC	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	26, 249
BssMI	GATC	2 cut(s)	79, 343
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	9, 186
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	125, 321
BstKTI	GATC	2 cut(s)	82, 346
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	79, 343
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	125, 321
CciI	TCATGA	1 cut(s)	91
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	56, 92
CviJI	RGCY	6 cut(s)	89, 184, 190, 248, 289, 322
CviKI_1	RGCY	6 cut(s)	89, 184, 190, 248, 289, 322
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	9, 186
DpnI	GATC	2 cut(s)	81, 345
DpnII	GATC	2 cut(s)	79, 343
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	2 cut(s)	59, 95
FaiI	YATR	6 cut(s)	15, 57, 93, 257, 337, 355
FatI	CATG	2 cut(s)	55, 91
FokI	GGATG	2 cut(s)	132, 328
FriOI	GRGCYC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	184
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	59, 95
HincII	GTYRAC	2 cut(s)	73, 227
HindII	GTYRAC	2 cut(s)	73, 227
HinfI	GANTC	2 cut(s)	235, 267
Hpy166II	GTNNAC	2 cut(s)	73, 227
Hpy188III	TCNNGA	5 cut(s)	49, 92, 215, 301, 347
Hpy8I	GTNNAC	2 cut(s)	73, 227
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	9, 186
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	59, 95
Kzo9I	GATC	2 cut(s)	79, 343
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	7, 78, 228, 230
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	223
MalI	GATC	2 cut(s)	81, 345
MboI	GATC	2 cut(s)	79, 343
MboII	GAAGA	3 cut(s)	16, 37, 115
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	16, 111, 198, 279
Mva1269I	GAATGC	1 cut(s)	203
NdeII	GATC	2 cut(s)	79, 343
NlaIII	CATG	2 cut(s)	59, 95
NlaIV	GGNNCC	1 cut(s)	321
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	235, 267
PspN4I	GGNNCC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	79, 343
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	4 cut(s)	132, 192, 226, 291
Sse9I	AATT	4 cut(s)	16, 111, 198, 279
SseBI	AGGCCT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	238, 342
TasI	AATT	4 cut(s)	16, 111, 198, 279
TfiI	GAWTC	2 cut(s)	235, 267
TspDTI	ATGAA	2 cut(s)	17, 108
TspGWI	ACGGA	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.