Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000178

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

121694 .. 122256

Gene Structure 563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_178G00437330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTTTTCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCGTGACATTCCTGTTCTTGACGCCGATCTTGTGGCTTGTGATGTATTGAAGAAGGGAACTGGTGGATGGGAAAATGTTGTTTCAGCATTTGGACAGGGCATTTTGCTACCTGATGGAGAAGTTGATAGGCCTAAACTAGGAAAAATTCTATGGTTGAAGGGGTTTAAGGTTATTGTTTTTGATATCCCTCTATTGTTGGAGGCCATGATGGACACATGGACAAAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTTCAGAGACTCAATTTGAGGAACAAAACAAGTGAGGATGATGCTCGAAACCAAATAAATGCTCAGATGTCGCTTGATATAAAAAGGAGTAAGGCAAACATAGTGATTGATAACACTAGATCACAAGATGATTTAAAAGAGAAGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

160

Amino Acids

17.85

Weight (kDa)

7.79

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 73	5.9e-20	Dephospho-CoA kinase
CoaE	PF01121	79 - 151	1e-17	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	64, 118, 226
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	2 cut(s)	55, 331
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	3 cut(s)	66, 197, 270
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	67
BccI	CCATC	3 cut(s)	129, 176, 271
BcoDI	GTCTC	2 cut(s)	55, 331
BfaI	CTAG	2 cut(s)	206, 447
BmcAI	AGTACT	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	140, 373
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	68, 199, 272
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	55, 331
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	68, 199, 272
Bsp143I	GATC	3 cut(s)	94, 316, 449
BspANI	GGCC	3 cut(s)	68, 199, 272
BspCNI	CTCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	94, 316, 449
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	140, 373
BstKTI	GATC	3 cut(s)	97, 319, 452
BstMAI	GTCTC	2 cut(s)	55, 331
BstMBI	GATC	3 cut(s)	94, 316, 449
BsuRI	GGCC	3 cut(s)	68, 199, 272
BtsCI	GGATG	2 cut(s)	140, 373
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	274, 285
CviJI	RGCY	6 cut(s)	68, 104, 199, 272, 295, 331
CviKI_1	RGCY	6 cut(s)	68, 104, 199, 272, 295, 331
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	96, 318, 451
DpnII	GATC	3 cut(s)	94, 316, 449
DraI	TTTAAA	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	2 cut(s)	277, 288
FaiI	YATR	6 cut(s)	220, 275, 286, 310, 410, 431
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	273, 284
FokI	GGATG	2 cut(s)	147, 380
FspBI	CTAG	2 cut(s)	206, 447
HaeIII	GGCC	3 cut(s)	68, 199, 272
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	277, 288
HinfI	GANTC	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	336, 396
Hpy188III	TCNNGA	2 cut(s)	86, 320
HpyAV	CCTTC	2 cut(s)	115, 220
HpyCH4III	ACNGT	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	277, 288
Kzo9I	GATC	3 cut(s)	94, 316, 449
LpnPI	CCDG	6 cut(s)	21, 93, 114, 149, 192, 333
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	206, 447
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	96, 318, 451
MboI	GATC	3 cut(s)	94, 316, 449
MboII	GAAGA	3 cut(s)	52, 52, 130
MluCI	AATT	2 cut(s)	213, 343
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	262, 267, 342, 358
MseI	TTAA	2 cut(s)	234, 464
NdeII	GATC	3 cut(s)	94, 316, 449
NlaIII	CATG	2 cut(s)	277, 288
NmuCI	GTSAC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	199
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	234, 464
Sau3AI	GATC	3 cut(s)	94, 316, 449
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	333
SetI	ASST	3 cut(s)	181, 240, 333
SfaNI	GCATC	1 cut(s)	361
Sse9I	AATT	2 cut(s)	213, 343
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	206, 447
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	315, 376
TasI	AATT	2 cut(s)	213, 343
TatI	WGTACW	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	234, 464
Tru9I	TTAA	2 cut(s)	234, 464
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	213
XspI	CTAG	2 cut(s)	206, 447
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.