Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

29084121 .. 29085089

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGATCGTGGGGCTGACAGGTGGAATTTCTTCCGGGAAGAGTACCGTCTCCAATCTCTTCAAGGAACACGGCATTCCGGTCGTTGATGCGGATCTTGTTGCTCGAGATGTGTTGAAGAAGGGGACTGGTGGCTGGAAAAAGGTTGTTTCAGCATTTGGAGAGGATATTTTGCAACTTGATGGAGAAGTTGATAGGCCTAAACTGGGACAAATTGTGTTCTCTAATCCCGAAAAGCGCCAACTTCTTAACCGACTGCTAGCTCCTTATATATCGTCTGGAATCTTTTGGGAAATTTTGAAGCTATGGAAGAAGGGGTGTAAGGTTATTGTTCTTGATGTTCCTCTGTTGTTCGAGGCCAAGATGGACAAGTGGACGAAGCCTATTATTGTTGTATGGGTTGATCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

9.55

Isoelectric Point (pI)

16.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 135	1.5e-44	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	3 cut(s)	14, 102, 402
AcsI	RAATTY	2 cut(s)	27, 294
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	64, 118, 301
AluBI	AGCT	2 cut(s)	263, 304
AluI	AGCT	2 cut(s)	263, 304
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	14, 102, 402
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	197, 357
ApoI	RAATTY	2 cut(s)	27, 294
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	105
BccI	CCATC	2 cut(s)	176, 358
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	79
BmtI	GCTAGC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	133, 210
Bse8I	GATNNNNATC	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	133, 210
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	199, 359
BshVI	ATCGAT	1 cut(s)	406
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	36, 80
BslFI	GGGAC	2 cut(s)	139, 222
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	139, 222
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	199, 359
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	6, 94, 403, 407
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	199, 359
BspDI	ATCGAT	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	3 cut(s)	14, 102, 402
BsrI	ACTGG	2 cut(s)	133, 210
BssMI	GATC	4 cut(s)	6, 94, 403, 407
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstC8I	GCNNGC	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	9, 97, 406, 410
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	6, 94, 403, 407
BstMCI	CGRYCG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	199, 359
BsuTUI	ATCGAT	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	45
CviJI	RGCY	7 cut(s)	16, 135, 199, 263, 304, 359, 382
CviKI_1	RGCY	7 cut(s)	16, 135, 199, 263, 304, 359, 382
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	4 cut(s)	8, 96, 405, 409
DpnII	GATC	4 cut(s)	6, 94, 403, 407
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	4 cut(s)	270, 272, 307, 397
FaqI	GGGAC	2 cut(s)	139, 222
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	199, 359
HapII	CCGG	2 cut(s)	36, 80
HhaI	GCGC	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	2 cut(s)	36, 80
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188III	TCNNGA	5 cut(s)	107, 230, 279, 335, 411
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	175
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	6, 94, 403, 407
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	6, 49, 93, 114, 121, 191, 264
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	260
MalI	GATC	4 cut(s)	8, 96, 405, 409
MboI	GATC	4 cut(s)	6, 94, 403, 407
MboII	GAAGA	5 cut(s)	24, 52, 52, 130, 322
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	3 cut(s)	27, 213, 294
MnlI	CCTC	3 cut(s)	157, 349, 354
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	1 cut(s)	249
MspI	CCGG	2 cut(s)	36, 80
MspR9I	CCNGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	6, 94, 403, 407
NheI	GCTAGC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	199
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	249
Sau3AI	GATC	4 cut(s)	6, 94, 403, 407
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	5 cut(s)	25, 147, 265, 306, 327
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	27, 213, 294
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	106, 354, 406
TasI	AATT	3 cut(s)	27, 213, 294
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
XapI	RAATTY	2 cut(s)	27, 294
XhoI	CTCGAG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	31
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.