Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

26143178 .. 26143864

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCGTCTGGGAAGAGTACTGTCTCAAATCTCTTTAAGGCCCATGACATTCCTGTTGTTGACGCGGATCTTGTGGCTCGTGATGTATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTTAGCATTTGGACAAGGCATTTTGCAACCAGATGGAGAAGTTGATAGGCCTAAACTGGGGCAAATTGTATTCTCTAATCCTGAAAAGCGTCAACTTTTGAATCGGCTATTGGCCCATTACATATCATCTGGAATTTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

115

Amino Acids

12.52

Weight (kDa)

9.85

Isoelectric Point (pI)

17.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 112	9.9e-32	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	92
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	282, 294
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	118, 250, 301, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	3 cut(s)	66, 197, 261
ApoI	RAATTY	2 cut(s)	282, 294
AspS9I	GGNCC	2 cut(s)	67, 262
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	2 cut(s)	129, 176
BcoDI	GTCTC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	67, 262
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	133, 210
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	133, 210
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	68, 199, 263
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	68, 199, 263
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	3 cut(s)	68, 199, 263
BspFNI	CGCG	1 cut(s)	92
BspPI	GGATC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	133, 210
BssMI	GATC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	94
BstUI	CGCG	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	68, 199, 263
BtsCI	GGATG	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	67, 262
CseI	GACGC	2 cut(s)	98, 227
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	68, 104, 199, 256, 263, 304
CviKI_1	RGCY	6 cut(s)	68, 104, 199, 256, 263, 304
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	199
FaeI	CATG	1 cut(s)	74
FaiI	YATR	3 cut(s)	72, 272, 307
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	68, 199, 263
HgaI	GACGC	2 cut(s)	98, 227
Hin1II	CATG	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	88, 242
HindII	GTYRAC	2 cut(s)	88, 242
HinfI	GANTC	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	88, 242
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	4 cut(s)	107, 230, 279, 335
Hpy8I	GTNNAC	2 cut(s)	88, 242
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	21, 93, 114, 191, 192, 243, 264
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	52, 130
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	3 cut(s)	213, 282, 294
MseI	TTAA	2 cut(s)	63, 321
MvnI	CGCG	1 cut(s)	92
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	67, 262
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	63, 321
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	2 cut(s)	67, 262
ScaI	AGTACT	1 cut(s)	46
SetI	ASST	3 cut(s)	147, 306, 327
Sse9I	AATT	3 cut(s)	213, 282, 294
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	3 cut(s)	213, 282, 294
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	63, 321
Tru9I	TTAA	2 cut(s)	63, 321
XapI	RAATTY	2 cut(s)	282, 294
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.