Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

37763599 .. 37766552

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0234900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGTTTGATAACCCCTAAAGATTCACTTGCTCAGCTTCACATTGCGCTTTTGAAGGGAATACCACCAGCAAGTAAAACATTGGATAGTTCTGATGCATATGATCAAGCAAAGTTGCTGGAGAACGTGATGCTGCTAAGACTATTGAAACTGAGCTATTCCTGCTCTTCAGAAACTTCAGAAGATGATTATGACCGGGTCATTCATGAGGCTATAAAAGTAATAAATAAGAGGAAAAGTACTGTAGAGAAAGTGCAAGAAAGGAAGAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

8.71

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	153, 162
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	55, 148
AluBI	AGCT	2 cut(s)	37, 156
AluI	AGCT	2 cut(s)	37, 156
ApeKI	GCWGC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	120
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	2 cut(s)	85, 120
BpmI	CTGGAG	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	47, 143
BseXI	GCAGC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	103
Bsp1720I	GCTNAGC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	46, 144
BspHI	TCATGA	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	42
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	172, 260
BstDEI	CTNAG	3 cut(s)	33, 137, 152
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	3 cut(s)	37, 156, 212
CviKI_1	RGCY	3 cut(s)	37, 156, 212
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	33, 137, 152
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	172, 260
EarI	CTCTTC	2 cut(s)	172, 260
Eco57I	CTGAAG	2 cut(s)	153, 162
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	1 cut(s)	209
FaiI	YATR	5 cut(s)	100, 102, 192, 207, 215
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	94, 172, 181
Hpy188III	TCNNGA	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	98, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	3 cut(s)	33, 137, 152
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LguI	GCTCTTC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	81, 104, 175, 209
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	2 cut(s)	85, 120
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	159, 194
MnlI	CCTC	2 cut(s)	202, 225
Mph1103I	ATGCAT	1 cut(s)	100
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	100
PagI	TCATGA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	135
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	172
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	3 cut(s)	39, 129, 158
SfaNI	GCATC	2 cut(s)	85, 120
SfcI	CTRYAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.