Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

40179600 .. 40180900

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGTTAGTGGGACTGACGGGTGGGATTTCGTCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTCGATGCCGATCTTGTGGCTCGTGTAAGATATATTGAAGAAGGGAACTGGTGGATGGAAAAGGTTGTTTCAGCATTTGGGCAGGGTGTTTTGCTACCTGATGGAGAAGTTGATAGACCTAAACTAGGACAAATTGTATTCTCTAATCCCGAAAAGCGTCAACTTTTGAACCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGCAAATTTGGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATTGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTTGAGGGACAGAACAAGTGAGAATGATGCTCGAAAACGGATAAATGCTCAAGTGTCACTCGATTTAAAGAGGACCATGGCAGACATTGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAAAACTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAACTTTCGCTTTCTCGCCAAGGTGCTTCATCTGTTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGATAGTAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

236

Amino Acids

26.81

Weight (kDa)

9.49

Isoelectric Point (pI)

19.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 182	8e-55	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	690, 709
AclWI	GGATC	2 cut(s)	401, 547
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	209, 262, 603
AgsI	TTSAA	4 cut(s)	64, 122, 253, 316
AluBI	AGCT	2 cut(s)	307, 421
AluI	AGCT	2 cut(s)	307, 421
Alw26I	GTCTC	3 cut(s)	55, 421, 655
AlwI	GGATC	2 cut(s)	401, 547
AoxI	GGCC	2 cut(s)	66, 360
ApoI	RAATTY	1 cut(s)	297
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspS9I	GGNCC	3 cut(s)	67, 378, 507
AvaII	GGWCC	2 cut(s)	378, 507
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	3 cut(s)	133, 179, 369
BcoDI	GTCTC	3 cut(s)	55, 421, 655
BfaI	CTAG	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	378, 507
BmgT120I	GGNCC	3 cut(s)	67, 378, 507
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	79, 451
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	510, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 262, 603
Bse1I	ACTGG	3 cut(s)	137, 267, 541
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	510, 628
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	209, 262, 603
BseNI	ACTGG	3 cut(s)	137, 267, 541
BshFI	GGCC	2 cut(s)	68, 362
BslFI	GGGAC	3 cut(s)	27, 329, 455
BslI	CCNNNNNNNGG	3 cut(s)	209, 262, 603
BsmAI	GTCTC	3 cut(s)	55, 421, 655
BsmFI	GGGAC	3 cut(s)	27, 329, 455
BsnI	GGCC	2 cut(s)	68, 362
Bsp143I	GATC	3 cut(s)	94, 406, 539
Bsp19I	CCATGG	1 cut(s)	510
BspANI	GGCC	2 cut(s)	68, 362
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	401, 547
BsrI	ACTGG	3 cut(s)	137, 267, 541
BssECI	CCNNGG	2 cut(s)	510, 628
BssMI	GATC	3 cut(s)	94, 406, 539
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	510, 628
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	49, 574
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDSI	CCRYGG	1 cut(s)	510
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	97, 409, 542
BstMAI	GTCTC	3 cut(s)	55, 421, 655
BstMBI	GATC	3 cut(s)	94, 406, 539
BsuRI	GGCC	2 cut(s)	68, 362
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	67, 378, 507
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	71, 433, 511, 603
CviJI	RGCY	8 cut(s)	68, 104, 266, 307, 362, 385, 421, 595
CviKI_1	RGCY	8 cut(s)	68, 104, 266, 307, 362, 385, 421, 595
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	3 cut(s)	96, 408, 541
DpnII	GATC	3 cut(s)	94, 406, 539
DraI	TTTAAA	3 cut(s)	501, 555, 568
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	2 cut(s)	510, 628
Eco47I	GGWCC	2 cut(s)	378, 507
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	510, 628
ErhI	CCWWGG	2 cut(s)	510, 628
FaeI	CATG	4 cut(s)	74, 436, 514, 606
FaqI	GGGAC	3 cut(s)	27, 329, 455
FatI	CATG	4 cut(s)	70, 432, 510, 602
FokI	GGATG	1 cut(s)	151
FspBI	CTAG	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	68, 362
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	74, 436, 514, 606
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	285, 429
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	680
Hpy188III	TCNNGA	5 cut(s)	233, 282, 338, 410, 424
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	119, 310
HpyCH4III	ACNGT	2 cut(s)	49, 574
Hsp92II	CATG	4 cut(s)	74, 436, 514, 606
Kzo9I	GATC	3 cut(s)	94, 406, 539
LmnI	GCTCC	2 cut(s)	271, 426
LweI	GCATC	2 cut(s)	79, 451
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	489, 586
MalI	GATC	3 cut(s)	96, 408, 541
MboI	GATC	3 cut(s)	94, 406, 539
MboII	GAAGA	3 cut(s)	52, 52, 134
MluCI	AATT	3 cut(s)	216, 297, 704
MlyI	GAGTC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	352, 357, 432, 498, 541, 577
MseI	TTAA	4 cut(s)	324, 500, 554, 567
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	94, 406, 539
NlaIII	CATG	4 cut(s)	74, 436, 514, 606
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	489, 586
PfeI	GAWTC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PsiI	TTATAA	2 cut(s)	690, 709
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	67, 378, 507
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	324, 500, 554, 567
Sau3AI	GATC	3 cut(s)	94, 406, 539
Sau96I	GGNCC	3 cut(s)	67, 378, 507
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	79, 451
SinI	GGWCC	2 cut(s)	378, 507
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	216, 297, 704
SspMI	CTAG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	510, 628
TaaI	ACNGT	2 cut(s)	49, 574
TaqI	TCGA	5 cut(s)	87, 357, 405, 466, 495
TasI	AATT	3 cut(s)	216, 297, 704
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	4 cut(s)	324, 500, 554, 567
Tru9I	TTAA	4 cut(s)	324, 500, 554, 567
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	2 cut(s)	489, 586
Tsp45I	GTSAC	2 cut(s)	489, 586
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	378, 507
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	297
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.