Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

27972158 .. 27973160

Gene Structure 1003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGATAGTGGGACTGACGGTTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTCGACGCTAATCTTGTGGCTCGTGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGGCAGGGTATTTTGCAACCTGATGGAGAAGTTGATAGACCTAAACTAGGGCAAATTGAATTCTCCAATCCCAAAAAGCGTCAACTTTTGAACCGACTACTGGCTCCTTACATATCATCTGGCATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGATTAGTATTCTTGATGTCCCTCTATTGTTCAAGGCCAAGATGGACAGATGGACCAAGCCCATTGTTTTTGTATGGGTCGATCCTGAAACACAGCTTCAGAGATTCATGTTGAGGGACAGAACACGTGAGGAACTGAGGATGATGCTCGAAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

160

Amino Acids

18.25

Weight (kDa)

10.09

Isoelectric Point (pI)

26.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 152	6.7e-41	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	218, 294
AcuI	CTGAAG	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	206, 259
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	7 cut(s)	64, 118, 218, 250, 301, 313, 355
AluBI	AGCT	2 cut(s)	304, 418
AluI	AGCT	2 cut(s)	304, 418
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	66, 357
ApoI	RAATTY	2 cut(s)	218, 294
AspS9I	GGNCC	2 cut(s)	67, 375
AvaII	GGWCC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	449
BccI	CCATC	4 cut(s)	129, 176, 358, 366
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	206
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	67, 375
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	2 cut(s)	291, 456
BsaAI	YACGTR	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 259
Bse1I	ACTGG	2 cut(s)	133, 264
BseGI	GGATG	2 cut(s)	140, 468
BseLI	CCNNNNNNNGG	2 cut(s)	206, 259
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	133, 264
BshFI	GGCC	2 cut(s)	68, 359
BslFI	GGGAC	3 cut(s)	27, 326, 452
BslI	CCNNNNNNNGG	2 cut(s)	206, 259
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	27, 326, 452
BsnI	GGCC	2 cut(s)	68, 359
Bsp143I	GATC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	68, 359
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	133, 264
BssMI	GATC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	22, 49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstBAI	YACGTR	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	458
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	140, 468
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	68, 359
BtsCI	GGATG	2 cut(s)	140, 468
Cfr13I	GGNCC	2 cut(s)	67, 375
CseI	GACGC	2 cut(s)	98, 227
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	71, 430
CviJI	RGCY	7 cut(s)	68, 104, 263, 304, 359, 382, 418
CviKI_1	RGCY	7 cut(s)	68, 104, 263, 304, 359, 382, 418
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	404
Eco72I	CACGTG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	218
FaeI	CATG	2 cut(s)	74, 433
FaiI	YATR	6 cut(s)	72, 113, 272, 307, 397, 431
FaqI	GGGAC	3 cut(s)	27, 326, 452
FatI	CATG	2 cut(s)	70, 429
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	2 cut(s)	147, 475
FspBI	CTAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	68, 359
HgaI	GACGC	2 cut(s)	98, 227
Hin1II	CATG	2 cut(s)	74, 433
HincII	GTYRAC	2 cut(s)	88, 242
HindII	GTYRAC	2 cut(s)	88, 242
HinfI	GANTC	1 cut(s)	426
Hpy166II	GTNNAC	2 cut(s)	88, 242
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	3 cut(s)	107, 335, 407
Hpy8I	GTNNAC	2 cut(s)	88, 242
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	2 cut(s)	22, 49
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	2 cut(s)	74, 433
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	21, 93, 114, 149, 192, 245, 264, 420
LweI	GCATC	2 cut(s)	291, 456
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	448
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	3 cut(s)	52, 52, 130
MluCI	AATT	3 cut(s)	213, 218, 294
MnlI	CCTC	4 cut(s)	354, 429, 445, 453
MseI	TTAA	1 cut(s)	321
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	2 cut(s)	74, 433
NlaIV	GGNNCC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	426
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PspCI	CACGTG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	67, 375
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	2 cut(s)	67, 375
ScaI	AGTACT	1 cut(s)	46
SetI	ASST	6 cut(s)	147, 181, 202, 306, 420, 451
SfaNI	GCATC	2 cut(s)	291, 456
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	3 cut(s)	213, 218, 294
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	22, 49
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	87, 402, 471
TasI	AATT	3 cut(s)	213, 218, 294
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	21, 418
VpaK11BI	GGWCC	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	2 cut(s)	218, 294
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.