Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

51561605 .. 51567677

Gene Structure 6073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACCCAACTTTCTCTGCACTTTGTTACTTCCCAAACTGGCGGGAATAGTACCGTCTCAAATGCCTTCAAGGCCCATGACATTCCTGTTGTTGATGTTGATCTTGTGGCTCGTGAAGTATTGAAGAAGGGAATTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACGGGGCATTTTGGAAACTGATGGAGAAGTTGATAGGCCTAAGCTACGGCAAATTGTATTCTCTAATCCTGAAAAACGTCAACTTTTGAATCGACTACTGGCTTCTTACATATCGTTTGGAATCTTTTGGGAAATTTTGAAGCTATTGTTGAAGGGTTTTAAAGTTTTTGTTCTTGATATCCCTCTATTGTTCGAGGTCAAGATGGACAGATGGATGGAGCCCATTATTGTTGTATGGGTCGATCCTGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

140

Amino Acids

15.88

Weight (kDa)

8.96

Isoelectric Point (pI)

13.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	14 - 139	1.7e-31	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	70, 124, 256, 307, 319
AluBI	AGCT	2 cut(s)	211, 310
AluI	AGCT	2 cut(s)	211, 310
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	72, 203
ApoI	RAATTY	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	111
BccI	CCATC	5 cut(s)	135, 182, 364, 372, 376
BceAI	ACGGC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	43, 270
Bse8I	GATNNNNATC	1 cut(s)	99
BseGI	GGATG	2 cut(s)	146, 387
BseJI	GATNNNNATC	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	43, 270
BshFI	GGCC	2 cut(s)	74, 205
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	74, 205
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	100, 409
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	74, 205
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	43, 270
BssMI	GATC	2 cut(s)	100, 409
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	146, 387
BstKTI	GATC	2 cut(s)	103, 412
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	100, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	74, 205
BtsCI	GGATG	2 cut(s)	146, 387
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	7 cut(s)	74, 110, 205, 211, 269, 310, 388
CviKI_1	RGCY	7 cut(s)	74, 110, 205, 211, 269, 310, 388
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	102, 411
DpnII	GATC	2 cut(s)	100, 409
DraI	TTTAAA	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	346
EcoRV	GATATC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 278, 403, 421
FatI	CATG	1 cut(s)	76
FauI	CCCGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	153, 394
FriOI	GRGCYC	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	74, 205
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	256, 288
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188III	TCNNGA	5 cut(s)	113, 236, 341, 367, 413
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	3 cut(s)	76, 121, 313
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	100, 409
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	4 cut(s)	24, 99, 249, 251
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	102, 411
MboI	GATC	2 cut(s)	100, 409
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	132, 219, 300
MnlI	CCTC	2 cut(s)	355, 360
MseI	TTAA	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	100, 409
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	256, 288
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	100, 409
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	5 cut(s)	153, 213, 247, 312, 366
Sse9I	AATT	3 cut(s)	132, 219, 300
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	259, 360, 408
TasI	AATT	3 cut(s)	132, 219, 300
TfiI	GAWTC	2 cut(s)	256, 288
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
XapI	RAATTY	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.