Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

24905165 .. 24906951

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCTGATCTTGTGGCTCGTGACATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACAGGTGTTGTTTTGCAACCTGATGGAGAAGTTGACTAAACTAGGGCAAATCGTATTCTCTAATCCCGAAAAGCGTCAACTTTTGGATCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTTGAAGAACAGAACAAGTGAGGATGATGCTCGAAACCGGATAAATGCTCAGGTGTCACTCGATTTAAGGAGGACCATGGCAGACATAGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAAAAGTGTGCTATTTGAGGTCACAAAGCCCTTGTCATGGACTAAACTTTGGCTTTCTCGCCAACGTGCTTCATCTGCTCTTGTCTCCGTTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAATGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

234

Amino Acids

26.53

Weight (kDa)

9.86

Isoelectric Point (pI)

21.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 180	4.6e-51	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AclWI	GGATC	3 cut(s)	255, 395, 541
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	597
AgsI	TTSAA	5 cut(s)	64, 118, 298, 310, 433
AluBI	AGCT	2 cut(s)	301, 415
AluI	AGCT	2 cut(s)	301, 415
Alw26I	GTCTC	3 cut(s)	55, 415, 649
AlwI	GGATC	3 cut(s)	255, 395, 541
AoxI	GGCC	2 cut(s)	66, 354
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AspS9I	GGNCC	3 cut(s)	67, 372, 501
AvaII	GGWCC	2 cut(s)	372, 501
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	4 cut(s)	129, 178, 355, 363
BcoDI	GTCTC	3 cut(s)	55, 415, 649
BfaI	CTAG	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	372, 501
BmgT120I	GGNCC	3 cut(s)	67, 372, 501
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	3 cut(s)	133, 261, 535
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	140, 457
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	3 cut(s)	133, 261, 535
BshFI	GGCC	2 cut(s)	68, 356
BsiSI	CCGG	1 cut(s)	466
BslFI	GGGAC	2 cut(s)	27, 323
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	3 cut(s)	55, 415, 649
BsmFI	GGGAC	2 cut(s)	27, 323
BsnI	GGCC	2 cut(s)	68, 356
Bsp143I	GATC	4 cut(s)	94, 247, 400, 533
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	2 cut(s)	68, 356
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	255, 395, 541
BsrI	ACTGG	3 cut(s)	133, 261, 535
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	94, 247, 400, 533
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	140, 457
BstKTI	GATC	4 cut(s)	97, 250, 403, 536
BstMAI	GTCTC	3 cut(s)	55, 415, 649
BstMBI	GATC	4 cut(s)	94, 247, 400, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BsuRI	GGCC	2 cut(s)	68, 356
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	140, 457
BtsIMutI	CAGTG	1 cut(s)	528
Cfr13I	GGNCC	3 cut(s)	67, 372, 501
CseI	GACGC	2 cut(s)	98, 224
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	71, 427, 505, 597
CviJI	RGCY	9 cut(s)	68, 104, 260, 301, 356, 379, 415, 589, 613
CviKI_1	RGCY	9 cut(s)	68, 104, 260, 301, 356, 379, 415, 589, 613
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	4 cut(s)	96, 249, 402, 535
DpnII	GATC	4 cut(s)	94, 247, 400, 533
DraI	TTTAAA	2 cut(s)	549, 562
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	372, 501
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	4 cut(s)	74, 430, 508, 600
FaqI	GGGAC	2 cut(s)	27, 323
FatI	CATG	4 cut(s)	70, 426, 504, 596
FokI	GGATG	2 cut(s)	147, 464
FspBI	CTAG	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	68, 356
HapII	CCGG	1 cut(s)	466
HgaI	GACGC	2 cut(s)	98, 224
Hin1II	CATG	4 cut(s)	74, 430, 508, 600
HincII	GTYRAC	3 cut(s)	88, 195, 239
HindII	GTYRAC	3 cut(s)	88, 195, 239
HinfI	GANTC	2 cut(s)	279, 423
HpaII	CCGG	1 cut(s)	466
Hpy166II	GTNNAC	3 cut(s)	88, 195, 239
Hpy188I	TCNGA	1 cut(s)	674
Hpy188III	TCNNGA	6 cut(s)	107, 227, 276, 332, 404, 418
Hpy8I	GTNNAC	3 cut(s)	88, 195, 239
HpyAV	CCTTC	2 cut(s)	115, 304
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	4 cut(s)	74, 430, 508, 600
Kzo9I	GATC	4 cut(s)	94, 247, 400, 533
LmnI	GCTCC	2 cut(s)	265, 420
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	3 cut(s)	107, 483, 580
MalI	GATC	4 cut(s)	96, 249, 402, 535
MboI	GATC	4 cut(s)	94, 247, 400, 533
MboII	GAAGA	4 cut(s)	52, 52, 130, 445
MluCI	AATT	2 cut(s)	291, 698
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	6 cut(s)	346, 351, 442, 492, 535, 571
MseI	TTAA	4 cut(s)	318, 494, 548, 561
MspI	CCGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	635
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	94, 247, 400, 533
NlaIII	CATG	4 cut(s)	74, 430, 508, 600
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	3 cut(s)	107, 483, 580
PfeI	GAWTC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	67, 372, 501
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	318, 494, 548, 561
Sau3AI	GATC	4 cut(s)	94, 247, 400, 533
Sau96I	GGNCC	3 cut(s)	67, 372, 501
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	2 cut(s)	372, 501
Sse9I	AATT	2 cut(s)	291, 698
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	5 cut(s)	250, 351, 399, 460, 489
TasI	AATT	2 cut(s)	291, 698
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	4 cut(s)	318, 494, 548, 561
Tru9I	TTAA	4 cut(s)	318, 494, 548, 561
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	3 cut(s)	107, 483, 580
Tsp45I	GTSAC	3 cut(s)	107, 483, 580
TspDTI	ATGAA	2 cut(s)	21, 621
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	2 cut(s)	372, 501
XapI	RAATTY	1 cut(s)	291
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.