Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00794

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

70847 .. 72222

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGTCTCAAATCTTTTCAAGGCCCATGACATTCCTGTTGTTGACGCCGATCTTGTGGCTCGTGGTATTTTGCAACCTGATGGAGAAGTTGATGGGCCTAAACTAGGGCAAATCGTATTCTCTAATCTCGAAAAGCGTCAATTTTTGAACCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTCCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAACCTGTTATTGTTGTATGGGTCGATCCAGAAACAGAGCTTCAGAGACTCATAAGTGTGGTATTTGAGGTCACAAAGCCCTTGTCATGGACTGAACTTTGGCTTTCTCACCAAGGTGCTTCATCTGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGACAGTAAATTACAGCAACCTTGGAGTTGTAAACAAGTCGACTCAAAATATGACTGCCTTAAATTCAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

191

Amino Acids

21.62

Weight (kDa)

9.08

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 44	1.8e-13	Dephospho-CoA kinase
CoaE	PF01121	38 - 126	3.4e-18	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	237, 563
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	149, 202, 408
AgsI	TTSAA	4 cut(s)	64, 193, 244, 256
AleI	CACNNNNGTG	1 cut(s)	435
AluBI	AGCT	2 cut(s)	247, 361
AluI	AGCT	2 cut(s)	247, 361
Alw26I	GTCTC	3 cut(s)	55, 361, 460
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	3 cut(s)	66, 140, 300
ApoI	RAATTY	2 cut(s)	237, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspS9I	GGNCC	3 cut(s)	67, 140, 318
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	4 cut(s)	119, 131, 301, 309
BcoDI	GTCTC	3 cut(s)	55, 361, 460
BfaI	CTAG	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	3 cut(s)	67, 140, 318
BmiI	GGNNCC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	433, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 202, 408
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	433, 521
BseLI	CCNNNNNNNGG	3 cut(s)	149, 202, 408
BseNI	ACTGG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	68, 142, 302
BslFI	GGGAC	2 cut(s)	27, 269
BslI	CCNNNNNNNGG	3 cut(s)	149, 202, 408
BsmAI	GTCTC	3 cut(s)	55, 361, 460
BsmFI	GGGAC	2 cut(s)	27, 269
BsnI	GGCC	3 cut(s)	68, 142, 302
Bsp143I	GATC	2 cut(s)	94, 346
BspANI	GGCC	3 cut(s)	68, 142, 302
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	433, 521
BssMI	GATC	2 cut(s)	94, 346
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	433, 521
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	49, 506
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	97, 349
BstMAI	GTCTC	3 cut(s)	55, 361, 460
BstMBI	GATC	2 cut(s)	94, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BsuRI	GGCC	3 cut(s)	68, 142, 302
Cfr13I	GGNCC	3 cut(s)	67, 140, 318
CseI	GACGC	2 cut(s)	98, 170
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	71, 408
CviJI	RGCY	9 cut(s)	68, 104, 142, 206, 247, 302, 361, 400, 424
CviKI_1	RGCY	9 cut(s)	68, 104, 142, 206, 247, 302, 361, 400, 424
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	2 cut(s)	96, 348
DpnII	GATC	2 cut(s)	94, 346
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	433, 521
Eco47I	GGWCC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	433, 521
ErhI	CCWWGG	2 cut(s)	433, 521
FaeI	CATG	2 cut(s)	74, 411
FaiI	YATR	9 cut(s)	72, 215, 250, 340, 374, 409, 479, 495, 552
FaqI	GGGAC	2 cut(s)	27, 269
FatI	CATG	2 cut(s)	70, 407
FblI	GTMKAC	1 cut(s)	540
FspBI	CTAG	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	68, 142, 302
HgaI	GACGC	2 cut(s)	98, 170
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	74, 411
HincII	GTYRAC	2 cut(s)	88, 541
HindII	GTYRAC	2 cut(s)	88, 541
HinfI	GANTC	3 cut(s)	225, 369, 542
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	88, 533, 541
Hpy188I	TCNGA	3 cut(s)	366, 485, 569
Hpy188III	TCNNGA	3 cut(s)	173, 222, 350
Hpy8I	GTNNAC	3 cut(s)	88, 533, 541
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	49, 506
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	74, 411
Kzo9I	GATC	2 cut(s)	94, 346
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	7 cut(s)	21, 93, 135, 188, 207, 339, 363
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	391, 500
MalI	GATC	2 cut(s)	96, 348
MboI	GATC	2 cut(s)	94, 346
MboII	GAAGA	1 cut(s)	52
MluCI	AATT	4 cut(s)	185, 237, 509, 563
MlyI	GAGTC	2 cut(s)	363, 536
MnlI	CCTC	3 cut(s)	292, 297, 382
MseI	TTAA	3 cut(s)	264, 561, 574
MslI	CAYNNNNRTG	2 cut(s)	377, 435
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	2 cut(s)	94, 346
NlaIII	CATG	2 cut(s)	74, 411
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	391, 500
OliI	CACNNNNGTG	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	225
PleI	GAGTC	2 cut(s)	363, 536
PpsI	GAGTC	2 cut(s)	363, 536
PsiI	TTATAA	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	67, 140, 318
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	377, 435
SalI	GTCGAC	1 cut(s)	539
SaqAI	TTAA	3 cut(s)	264, 561, 574
Sau3AI	GATC	2 cut(s)	94, 346
Sau96I	GGNCC	3 cut(s)	67, 140, 318
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	363, 536
SetI	ASST	9 cut(s)	124, 249, 270, 328, 363, 393, 439, 472, 523
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	377, 435
Sse9I	AATT	4 cut(s)	185, 237, 509, 563
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	433, 521
TaaI	ACNGT	2 cut(s)	49, 506
TaqI	TCGA	4 cut(s)	174, 297, 345, 540
TasI	AATT	4 cut(s)	185, 237, 509, 563
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	3 cut(s)	264, 561, 574
Tru9I	TTAA	3 cut(s)	264, 561, 574
TseFI	GTSAC	2 cut(s)	391, 500
Tsp45I	GTSAC	2 cut(s)	391, 500
TspDTI	ATGAA	2 cut(s)	21, 432
VpaK11BI	GGWCC	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	237, 563
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.