Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007367.1

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

21683 .. 22158

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007367.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaggatagtgggactgacgggggggattttgtctgggaagagtactgtctcaaatctcttcaaggcccatgacattcctgttcttgacgccgatcttgtggcttgtgatgtattgaagaagggaactggtggatggaaaaatgtcgtttcagcatttggacagtgcattttgctacctgatggagaactgtggttgaaggggtttaaggttattgtttttgatatccctctgttgttggagcccaagatggacacatggacaaagcccattattgttgtatgggtcgatcctgaaacacagcttcagagactcaatttgaggaacaaaacaagtgaggatgatgctcgaaaccaaataaatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

6.55

Isoelectric Point (pI)

21.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	64, 118, 199
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	55, 304
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	246
BccI	CCATC	3 cut(s)	129, 176, 244
BcoDI	GTCTC	2 cut(s)	55, 304
BmcAI	AGTACT	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	140, 346
BseNI	ACTGG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	55, 304
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	94, 289
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	94, 289
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	49, 165, 192
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	140, 346
BstKTI	GATC	2 cut(s)	97, 292
BstMAI	GTCTC	2 cut(s)	55, 304
BstMBI	GATC	2 cut(s)	94, 289
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	140, 346
BtsIMutI	CAGTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	71, 258
CviJI	RGCY	5 cut(s)	68, 104, 244, 268, 304
CviKI_1	RGCY	5 cut(s)	68, 104, 244, 268, 304
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	96, 291
DpnII	GATC	2 cut(s)	94, 289
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco24I	GRGCYC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	2 cut(s)	74, 261
FaiI	YATR	3 cut(s)	72, 259, 283
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	70, 257
FokI	GGATG	2 cut(s)	147, 353
FriOI	GRGCYC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	68
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	74, 261
HinfI	GANTC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	86, 293
HpyAV	CCTTC	2 cut(s)	115, 193
HpyCH4III	ACNGT	3 cut(s)	49, 165, 192
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	74, 261
Kzo9I	GATC	2 cut(s)	94, 289
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	5 cut(s)	21, 93, 114, 192, 306
LweI	GCATC	1 cut(s)	334
MalI	GATC	2 cut(s)	96, 291
MboI	GATC	2 cut(s)	94, 289
MboII	GAAGA	3 cut(s)	52, 52, 130
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	240, 315, 331
MseI	TTAA	1 cut(s)	207
NdeII	GATC	2 cut(s)	94, 289
NlaIII	CATG	2 cut(s)	74, 261
NlaIV	GGNNCC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	94, 289
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	3 cut(s)	181, 213, 306
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	49, 165, 192
TaqI	TCGA	2 cut(s)	288, 349
TasI	AATT	1 cut(s)	316
TatI	WGTACW	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	170
TspRI	CASTG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.