Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

6241342 .. 6244123

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGGATAGTGGGACTAACAGGTGGGATTTCATCTGGGAAGAGTACCGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTAGTGACGCTGATCTTGTGGCTCGTGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGAATTTGGACGGGGTATTTTGCTACCCGGTGGAGAAGTTGATAGACCTAAACTAGGACAAATTGTATTCTCTAATCCTGAAAAGCGTCAACTTTTGAATCGACTACTGGCTCCTTACATGTCATCTGGAATCTTTTGGGAAGTTTTGAAGCTATGGTTGAAGGGGTTCAAGGTTATTGTTCTTGATATCCCTCTATTGTTTGAGAGCAAGATGGACAGATGGACCAAGCCCATTATTGTTGTATGGGTTGATCCTGAAACACAGCTTCAGAGACTCATGTTGAGGGACAGAACATGTGAGAATGATGCTCGAAACCGGATAAATGCTCAGATGTCACTCGATTTAAAGAGGACCAAGGCAGACATTGTGATTGAGAACACTGGATCACATGAGGATTTAAAAGAGAAGTTCAAAAATGTGCTATTTGGGGTTACAAAACCATTGTCGTGGACTGAACTACGGCTTTCTCGCCAAGGTGCCTTATCTGCTCTTGTTTCCATCATCGTAGGTGTTCTTATGCTCAGAAAAGTTCATAATAGTGATACTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

9.92

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 181	8.5e-55	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	629
AclWI	GGATC	2 cut(s)	398, 544
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	270, 446
AgsI	TTSAA	7 cut(s)	64, 118, 250, 301, 313, 322, 565
AluBI	AGCT	2 cut(s)	304, 418
AluI	AGCT	2 cut(s)	304, 418
Alw26I	GTCTC	2 cut(s)	55, 418
AlwI	GGATC	2 cut(s)	398, 544
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	67, 375, 504
AsuC2I	CCSGG	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	375, 504
BanI	GGYRCC	1 cut(s)	629
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	4 cut(s)	129, 358, 366, 659
BceAI	ACGGC	1 cut(s)	629
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	55, 418
BfaI	CTAG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	375, 504
BmgT120I	GGNCC	3 cut(s)	67, 375, 504
BmiI	GGNNCC	2 cut(s)	264, 631
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	507, 625
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	133, 264, 538
BseDI	CCNNGG	2 cut(s)	507, 625
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	494, 688
BseNI	ACTGG	3 cut(s)	133, 264, 538
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	180, 469
BslFI	GGGAC	2 cut(s)	27, 452
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	55, 418
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	27, 452
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	94, 403, 536
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	493, 687
BspLI	GGNNCC	2 cut(s)	264, 631
BspPI	GGATC	2 cut(s)	398, 544
BspT107I	GGYRCC	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	133, 264, 538
BssECI	CCNNGG	2 cut(s)	507, 625
BssMI	GATC	3 cut(s)	94, 403, 536
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	507, 625
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	2 cut(s)	480, 674
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	97, 406, 539
BstMAI	GTCTC	2 cut(s)	55, 418
BstMBI	GATC	3 cut(s)	94, 403, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	274, 450
BstSCI	CCNGG	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	67, 375, 504
CseI	GACGC	2 cut(s)	98, 227
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	5 cut(s)	71, 271, 430, 447, 542
CviJI	RGCY	7 cut(s)	68, 104, 263, 304, 382, 418, 616
CviKI_1	RGCY	7 cut(s)	68, 104, 263, 304, 382, 418, 616
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	480, 674
DpnI	GATC	3 cut(s)	96, 405, 538
DpnII	GATC	3 cut(s)	94, 403, 536
DraI	TTTAAA	2 cut(s)	498, 552
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	2 cut(s)	507, 625
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	375, 504
Eco57I	CTGAAG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	507, 625
ErhI	CCWWGG	2 cut(s)	507, 625
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	5 cut(s)	74, 274, 433, 450, 545
FaqI	GGGAC	2 cut(s)	27, 452
FatI	CATG	5 cut(s)	70, 270, 429, 446, 541
FokI	GGATG	1 cut(s)	147
FspBI	CTAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	180, 469
HgaI	GACGC	2 cut(s)	98, 227
Hin1II	CATG	5 cut(s)	74, 274, 433, 450, 545
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	250, 282, 426
HpaII	CCGG	2 cut(s)	180, 469
Hpy166II	GTNNAC	2 cut(s)	242, 603
Hpy188I	TCNGA	4 cut(s)	154, 423, 483, 677
Hpy188III	TCNNGA	5 cut(s)	107, 230, 279, 335, 407
Hpy8I	GTNNAC	2 cut(s)	242, 603
HpyAV	CCTTC	2 cut(s)	115, 307
HpyCH4III	ACNGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	480, 674
Hsp92II	CATG	5 cut(s)	74, 274, 433, 450, 545
Kzo9I	GATC	3 cut(s)	94, 403, 536
LmnI	GCTCC	1 cut(s)	268
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	86, 486, 583
MalI	GATC	3 cut(s)	96, 405, 538
MboI	GATC	3 cut(s)	94, 403, 536
MboII	GAAGA	3 cut(s)	52, 52, 130
MluCI	AATT	3 cut(s)	155, 213, 701
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	4 cut(s)	354, 429, 495, 538
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	2 cut(s)	497, 551
MslI	CAYNNNNRTG	2 cut(s)	598, 690
MspI	CCGG	2 cut(s)	180, 469
MspR9I	CCNGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	94, 403, 536
NlaIII	CATG	5 cut(s)	74, 274, 433, 450, 545
NlaIV	GGNNCC	2 cut(s)	264, 631
NmuCI	GTSAC	2 cut(s)	86, 486
NspI	RCATGY	2 cut(s)	274, 450
PciI	ACATGT	2 cut(s)	270, 446
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	250, 282
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PscI	ACATGT	2 cut(s)	270, 446
PspN4I	GGNNCC	2 cut(s)	264, 631
PspPI	GGNCC	3 cut(s)	67, 375, 504
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	598, 690
SaqAI	TTAA	2 cut(s)	497, 551
Sau3AI	GATC	3 cut(s)	94, 403, 536
Sau96I	GGNCC	3 cut(s)	67, 375, 504
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	8 cut(s)	25, 147, 202, 306, 327, 420, 631, 664
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	2 cut(s)	375, 504
SmiMI	CAYNNNNRTG	2 cut(s)	598, 690
Sse9I	AATT	3 cut(s)	155, 213, 701
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	507, 625
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	253, 463, 492
TasI	AATT	3 cut(s)	155, 213, 701
TfiI	GAWTC	2 cut(s)	250, 282
Tru1I	TTAA	2 cut(s)	497, 551
Tru9I	TTAA	2 cut(s)	497, 551
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	86, 486
Tsp45I	GTSAC	2 cut(s)	86, 486
TspDTI	ATGAA	2 cut(s)	21, 674
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	2 cut(s)	375, 504
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	2 cut(s)	274, 450
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.