Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Forward (+)

40235284 .. 40236511

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029551

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATTTAGGAAGAGCACTGTCGCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCTGATCTTGTGGCTCATGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACAGGGTGTTTTGCAACTTGATGCAGAAACTACCGGGTCCTTACATATCATCTCGAATCCCAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTTGATCCTGAAACACAGCTCCAGAGACTCATGTTGAGGGACAGAACAAGTGAGGATGATGCTCGAAACCGGATAAATGCTCAGGTGTCACTAGATTTAAAGAGGACCATGGCAGACATAGTGATTGATAACACTGGATCACAAGAGGATTTAGAAGACAAGTTTAAAAGTGTGCTATTTGAGGTCACAAAGCCCTTGTCATGGGCTGAACTTTGGTTTTCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

183

Amino Acids

20.51

Weight (kDa)

7.96

Isoelectric Point (pI)

21.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 61	2.3e-15	Dephospho-CoA kinase
CoaE	PF01121	82 - 155	4.4e-21	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AclWI	GGATC	2 cut(s)	320, 466
AfiI	CCNNNNNNNGG	2 cut(s)	228, 522
AgsI	TTSAA	3 cut(s)	64, 118, 235
AluBI	AGCT	2 cut(s)	226, 340
AluI	AGCT	2 cut(s)	226, 340
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	320, 466
AoxI	GGCC	2 cut(s)	66, 279
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspS9I	GGNCC	4 cut(s)	67, 198, 297, 426
AsuC2I	CCSGG	1 cut(s)	196
AvaII	GGWCC	3 cut(s)	198, 297, 426
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	47
BccI	CCATC	3 cut(s)	129, 280, 288
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	198, 297, 426
BmgT120I	GGNCC	4 cut(s)	67, 198, 297, 426
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	172, 370
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 522
Bse1I	ACTGG	2 cut(s)	133, 460
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	140, 382
BseLI	CCNNNNNNNGG	2 cut(s)	228, 522
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	133, 460
BshFI	GGCC	2 cut(s)	68, 281
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	195, 391
BslFI	GGGAC	3 cut(s)	27, 248, 374
BslI	CCNNNNNNNGG	2 cut(s)	228, 522
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	3 cut(s)	27, 248, 374
BsnI	GGCC	2 cut(s)	68, 281
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	94, 325, 458
Bsp19I	CCATGG	1 cut(s)	429
BspANI	GGCC	2 cut(s)	68, 281
BspCNI	CTCAG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	320, 466
BspQI	GCTCTTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	133, 460
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	94, 325, 458
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	140, 382
BstKTI	GATC	3 cut(s)	97, 328, 461
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	94, 325, 458
BstSCI	CCNGG	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	68, 281
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	140, 382
BtsIMutI	CAGTG	2 cut(s)	45, 453
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	67, 198, 297, 426
CseI	GACGC	1 cut(s)	98
CviAII	CATG	5 cut(s)	71, 107, 352, 430, 522
CviJI	RGCY	8 cut(s)	68, 104, 226, 281, 304, 340, 514, 527
CviKI_1	RGCY	8 cut(s)	68, 104, 226, 281, 304, 340, 514, 527
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	96, 327, 460
DpnII	GATC	3 cut(s)	94, 325, 458
DraI	TTTAAA	2 cut(s)	420, 487
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	198, 297, 426
EcoO109I	RGGNCCY	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	5 cut(s)	74, 110, 355, 433, 525
FaqI	GGGAC	3 cut(s)	27, 248, 374
FatI	CATG	5 cut(s)	70, 106, 351, 429, 521
FokI	GGATG	2 cut(s)	147, 389
FspBI	CTAG	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	68, 281
HapII	CCGG	2 cut(s)	195, 391
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	5 cut(s)	74, 110, 355, 433, 525
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	217, 348
HpaII	CCGG	2 cut(s)	195, 391
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	107, 214, 257, 329, 343
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	115, 229
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	175, 185
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	5 cut(s)	74, 110, 355, 433, 525
Kzo9I	GATC	3 cut(s)	94, 325, 458
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	345
LweI	GCATC	2 cut(s)	172, 370
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	408, 505
MalI	GATC	3 cut(s)	96, 327, 460
MboI	GATC	3 cut(s)	94, 325, 458
MboII	GAAGA	4 cut(s)	52, 52, 130, 488
MhlI	GDGCHC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	271, 276, 351, 367, 417, 460, 496
MseI	TTAA	3 cut(s)	243, 419, 486
MspI	CCGG	2 cut(s)	195, 391
MspR9I	CCNGG	1 cut(s)	196
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	94, 325, 458
NlaIII	CATG	5 cut(s)	74, 110, 355, 433, 525
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	408, 505
PagI	TCATGA	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	228
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	67, 198, 297, 426
PspPPI	RGGWCCY	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	243, 419, 486
Sau3AI	GATC	3 cut(s)	94, 325, 458
Sau96I	GGNCC	4 cut(s)	67, 198, 297, 426
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	147, 228, 249, 342, 408, 507
SfaNI	GCATC	2 cut(s)	172, 370
SinI	GGWCC	3 cut(s)	198, 297, 426
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	215, 276, 385
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	243, 419, 486
Tru9I	TTAA	3 cut(s)	243, 419, 486
TscAI	CASTG	2 cut(s)	52, 460
TseFI	GTSAC	2 cut(s)	408, 505
Tsp45I	GTSAC	2 cut(s)	408, 505
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	52, 460
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	3 cut(s)	198, 297, 426
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.