Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

29026252 .. 29030247

Gene Structure 3996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGGATAGTGGGACTGGCGGGTGGGATTTCATCTGAGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCTGATCTTGTGGCTCGTGATATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCATTGCAACCTGATGGAGAAGTTGATAGGCCTAAACTAGGGCAAATCGTATTCTCTAATCCCGAAAAGCGTCAACTTTTGAACCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTTGAGGTGAAGATGGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCAGAGACTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

138

Amino Acids

15.52

Weight (kDa)

9.3

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 135	1.2e-35	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	276
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	188, 241
AgsI	TTSAA	5 cut(s)	64, 118, 232, 283, 295
AluBI	AGCT	2 cut(s)	286, 400
AluI	AGCT	2 cut(s)	286, 400
Alw26I	GTCTC	2 cut(s)	55, 399
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	2 cut(s)	66, 179
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	67, 357
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	4 cut(s)	129, 158, 340, 348
BcoDI	GTCTC	2 cut(s)	55, 399
BfaI	CTAG	1 cut(s)	188
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	67, 357
BmiI	GGNNCC	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 241
Bse1I	ACTGG	3 cut(s)	21, 133, 246
Bse3DI	GCAATG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	188, 241
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	27, 415
BseNI	ACTGG	3 cut(s)	21, 133, 246
BshFI	GGCC	2 cut(s)	68, 181
BslFI	GGGAC	2 cut(s)	27, 308
BslI	CCNNNNNNNGG	2 cut(s)	188, 241
BsmAI	GTCTC	2 cut(s)	55, 399
BsmFI	GGGAC	2 cut(s)	27, 308
BsnI	GGCC	2 cut(s)	68, 181
Bsp143I	GATC	2 cut(s)	94, 385
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	68, 181
BspCNI	CTCAG	2 cut(s)	28, 414
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	21, 133, 246
BssMI	GATC	2 cut(s)	94, 385
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	2 cut(s)	36, 401
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	97, 388
BstMAI	GTCTC	2 cut(s)	55, 399
BstMBI	GATC	2 cut(s)	94, 385
BsuRI	GGCC	2 cut(s)	68, 181
BtsCI	GGATG	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	67, 357
CseI	GACGC	2 cut(s)	98, 209
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	71, 411
CviJI	RGCY	7 cut(s)	68, 104, 181, 245, 286, 364, 400
CviKI_1	RGCY	7 cut(s)	68, 104, 181, 245, 286, 364, 400
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	36, 401
DpnI	GATC	2 cut(s)	96, 387
DpnII	GATC	2 cut(s)	94, 385
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	74, 414
FaiI	YATR	6 cut(s)	72, 113, 254, 289, 379, 412
FaqI	GGGAC	2 cut(s)	27, 308
FatI	CATG	2 cut(s)	70, 410
FauI	CCCGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	147
FspBI	CTAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	68, 181
HgaI	GACGC	2 cut(s)	98, 209
Hin1II	CATG	2 cut(s)	74, 414
HincII	GTYRAC	2 cut(s)	88, 224
HindII	GTYRAC	2 cut(s)	88, 224
HinfI	GANTC	2 cut(s)	264, 407
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	88, 224
Hpy188I	TCNGA	2 cut(s)	37, 404
Hpy188III	TCNNGA	5 cut(s)	107, 212, 261, 317, 389
Hpy8I	GTNNAC	2 cut(s)	88, 224
HpyAV	CCTTC	2 cut(s)	115, 289
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	36, 401
Hsp92II	CATG	2 cut(s)	74, 414
Kzo9I	GATC	2 cut(s)	94, 385
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	2, 93, 114, 174, 227, 246, 378, 402
MaeI	CTAG	1 cut(s)	188
MalI	GATC	2 cut(s)	96, 387
MboI	GATC	2 cut(s)	94, 385
MboII	GAAGA	4 cut(s)	52, 52, 130, 355
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	2 cut(s)	331, 336
MseI	TTAA	1 cut(s)	303
NdeII	GATC	2 cut(s)	94, 385
NlaIII	CATG	2 cut(s)	74, 414
NlaIV	GGNNCC	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	67, 357
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	94, 385
Sau96I	GGNCC	2 cut(s)	67, 357
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	401
SetI	ASST	6 cut(s)	147, 163, 288, 309, 342, 402
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	188
StuI	AGGCCT	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	276
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	21, 141
VpaK11BI	GGWCC	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	276
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.