Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

7397562 .. 7398030

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1063200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGATAGTAGGGTTGACAGGTGGAATTGCTTCTGGGAAGAGTACCTTCTTGAATCTCTTCAAGGAACATGGCATCCTAGTCGTTGATGCCGATCTTGTTGCTCGAGATATGTTAAAGAATGGCACTAGTGGCTGGAAAAAAGTTGTTTTGGCATTTGGAGAGGACATTTTGCAACCTGATGGAGAAGTTGATAGGCCTATACTGGGACAAATTGTGTTCTCTAACCCCGAAAAATGCCAACTTCTTAACCAGGAAATTTTGAAGCTATGGATGAAGGGGTGTAAGGTTATTATTCTTGATGTTCCTCTGTTGTTCGAGGCCAAGATGGACAAATGGTCAAAGCCTATTGTTATTGTATGGGTTGATCTTGAAACGCAGCTTCGGAGACTCATCGGTGGTAAGTTCCAACCAGTAGAGTCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

7.73

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 132	2.5e-37	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	55, 64, 265, 374
AhdI	GACNNNNNGTC	1 cut(s)	337
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	252
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	2 cut(s)	268, 382
AluI	AGCT	2 cut(s)	268, 382
Alw26I	GTCTC	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	197, 321
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	31, 59
AvaI	CYCGRG	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	176, 322
BcgI	CGANNNNNNTGC	4 cut(s)	64, 83, 98, 117
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	382
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	3 cut(s)	80, 129, 427
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	79, 84
BmuI	ACTGGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	210, 413
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	75, 279
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	210, 413
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	199, 323
BsiHKCI	CYCGRG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	199, 323
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	94, 367
BspANI	GGCC	2 cut(s)	199, 323
BsrI	ACTGG	2 cut(s)	210, 413
BssMI	GATC	2 cut(s)	94, 367
Bst2UI	CCWGG	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	35, 65
BstF5I	GGATG	2 cut(s)	75, 279
BstKTI	GATC	2 cut(s)	97, 370
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	94, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	199, 323
BtsCI	GGATG	2 cut(s)	75, 279
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	135, 199, 268, 323, 346, 382
CviKI_1	RGCY	6 cut(s)	135, 199, 268, 323, 346, 382
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	2 cut(s)	96, 369
DpnII	GATC	2 cut(s)	94, 367
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	35, 65
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	2 cut(s)	35, 65
Eco147I	AGGCCT	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	72, 113, 203, 271, 361
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	2 cut(s)	62, 286
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	3 cut(s)	80, 129, 427
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	199, 323
Hin1II	CATG	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	55, 390, 419
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	387
Hpy188III	TCNNGA	4 cut(s)	52, 107, 299, 371
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	58, 271
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	94, 367
LpnPI	CCDG	7 cut(s)	6, 21, 121, 191, 192, 239, 266
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	79, 84
MaeI	CTAG	3 cut(s)	80, 129, 427
MalI	GATC	2 cut(s)	96, 369
MboI	GATC	2 cut(s)	94, 367
MboII	GAAGA	3 cut(s)	16, 52, 52
MluCI	AATT	3 cut(s)	27, 213, 258
MlyI	GAGTC	2 cut(s)	384, 428
MnlI	CCTC	3 cut(s)	157, 313, 318
MroXI	GAANNNNTTC	2 cut(s)	31, 59
MseI	TTAA	2 cut(s)	116, 249
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	2 cut(s)	94, 367
NlaIII	CATG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	2 cut(s)	31, 59
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	2 cut(s)	384, 427
PpsI	GAGTC	2 cut(s)	384, 427
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	116, 249
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	2 cut(s)	94, 367
SchI	GAGTC	2 cut(s)	384, 428
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	6 cut(s)	25, 50, 181, 270, 291, 384
SfaNI	GCATC	2 cut(s)	79, 84
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	3 cut(s)	27, 213, 258
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	3 cut(s)	80, 129, 427
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	252
TaqI	TCGA	2 cut(s)	106, 318
TasI	AATT	3 cut(s)	27, 213, 258
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	116, 249
Tru9I	TTAA	2 cut(s)	116, 249
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	17, 290
XapI	RAATTY	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	105
XmnI	GAANNNNTTC	2 cut(s)	31, 59
XspI	CTAG	3 cut(s)	80, 129, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.