Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

25704853 .. 25710308

Gene Structure 5456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTCATCTGGGAAGAGTACTGCCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTGTTGACGCTGATCTTGTGGCTCGTGTAAGACATATTGAAGAAGGGAACTGGTGGATGGAAAAAGGTTGTTTCAGCATTTGGACAGGTGTTGTTTTGCAACCTGATGGAGAAGTTGATAGGCCTAAACTAGGGCAAATCGTATTCTCTAATCCCGAAAAGCGTCAACTTTTGGATCGACTACTGGCTCCTTACATATCATCTGGAATCTTTTGGGAAATTTTGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATGGACAGATGGACCAAGCGTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTTGAAGAACAGAACAAGTGAGGATGATGCTCGAAACCGGATAAATGCTCAGGTGTCACTCGATTTAAGGAGGACCATGGCAGACATAGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAAAAGTGTGCTAATTGAGGTCACAAAGCCCTTGTCATGGACCGAACTTTGGCTTTCTCGCCAACGCGCTTCATCTGCTCTTGTCTCCGTTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAATGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

237

Amino Acids

27.09

Weight (kDa)

9.32

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 183	7.8e-50	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AccII	CGCG	1 cut(s)	636
AclWI	GGATC	3 cut(s)	264, 404, 550
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	212, 606, 618
AgsI	TTSAA	5 cut(s)	64, 122, 307, 319, 442
AluBI	AGCT	2 cut(s)	310, 424
AluI	AGCT	2 cut(s)	310, 424
Alw26I	GTCTC	2 cut(s)	424, 658
AlwI	GGATC	3 cut(s)	264, 404, 550
AoxI	GGCC	3 cut(s)	66, 203, 363
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	4 cut(s)	67, 381, 510, 609
AvaII	GGWCC	3 cut(s)	381, 510, 609
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	4 cut(s)	133, 182, 364, 372
BcoDI	GTCTC	2 cut(s)	424, 658
BfaI	CTAG	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	3 cut(s)	381, 510, 609
BmgT120I	GGNCC	4 cut(s)	67, 381, 510, 609
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 606, 618
Bse1I	ACTGG	3 cut(s)	137, 270, 544
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	144, 466
BseLI	CCNNNNNNNGG	3 cut(s)	212, 606, 618
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	3 cut(s)	137, 270, 544
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	68, 205, 365
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	27, 332
BslI	CCNNNNNNNGG	3 cut(s)	212, 606, 618
BsmAI	GTCTC	2 cut(s)	424, 658
BsmFI	GGGAC	2 cut(s)	27, 332
BsnI	GGCC	3 cut(s)	68, 205, 365
Bsp143I	GATC	4 cut(s)	94, 256, 409, 542
Bsp19I	CCATGG	1 cut(s)	513
BspANI	GGCC	3 cut(s)	68, 205, 365
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	3 cut(s)	264, 404, 550
BsrI	ACTGG	3 cut(s)	137, 270, 544
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	4 cut(s)	94, 256, 409, 542
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	513
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	144, 466
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	4 cut(s)	97, 259, 412, 545
BstMAI	GTCTC	2 cut(s)	424, 658
BstMBI	GATC	4 cut(s)	94, 256, 409, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	68, 205, 365
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	144, 466
BtsIMutI	CAGTG	1 cut(s)	537
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	4 cut(s)	67, 381, 510, 609
CseI	GACGC	2 cut(s)	98, 233
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	71, 436, 514, 606
CviJI	RGCY	9 cut(s)	68, 104, 205, 269, 310, 365, 424, 598, 622
CviKI_1	RGCY	9 cut(s)	68, 104, 205, 269, 310, 365, 424, 598, 622
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	96, 258, 411, 544
DpnII	GATC	4 cut(s)	94, 256, 409, 542
DraI	TTTAAA	2 cut(s)	558, 571
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	381, 510, 609
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	74, 439, 517, 609
FaqI	GGGAC	2 cut(s)	27, 332
FatI	CATG	4 cut(s)	70, 435, 513, 605
FokI	GGATG	2 cut(s)	151, 473
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	637
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	68, 205, 365
HapII	CCGG	1 cut(s)	475
HgaI	GACGC	2 cut(s)	98, 233
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	4 cut(s)	74, 439, 517, 609
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	2 cut(s)	88, 248
HindII	GTYRAC	2 cut(s)	88, 248
HinfI	GANTC	2 cut(s)	288, 432
HpaII	CCGG	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	88, 248
Hpy188I	TCNGA	1 cut(s)	683
Hpy188III	TCNNGA	5 cut(s)	236, 285, 341, 413, 427
Hpy8I	GTNNAC	2 cut(s)	88, 248
HpyAV	CCTTC	2 cut(s)	119, 313
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	74, 439, 517, 609
HspAI	GCGC	1 cut(s)	636
Kzo9I	GATC	4 cut(s)	94, 256, 409, 542
LmnI	GCTCC	2 cut(s)	274, 429
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	492, 589
MalI	GATC	4 cut(s)	96, 258, 411, 544
MboI	GATC	4 cut(s)	94, 256, 409, 542
MboII	GAAGA	4 cut(s)	52, 52, 134, 454
MluCI	AATT	3 cut(s)	300, 582, 707
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	61, 355, 360, 451, 501, 544, 580
MseI	TTAA	4 cut(s)	327, 503, 557, 570
MspI	CCGG	1 cut(s)	475
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	94, 256, 409, 542
NlaIII	CATG	4 cut(s)	74, 439, 517, 609
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	492, 589
PceI	AGGCCT	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	4 cut(s)	67, 381, 510, 609
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	327, 503, 557, 570
Sau3AI	GATC	4 cut(s)	94, 256, 409, 542
Sau96I	GGNCC	4 cut(s)	67, 381, 510, 609
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	426
SetI	ASST	9 cut(s)	151, 172, 187, 312, 333, 426, 492, 591, 670
SfaNI	GCATC	1 cut(s)	454
SinI	GGWCC	3 cut(s)	381, 510, 609
Sse9I	AATT	3 cut(s)	300, 582, 707
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	513
TaqI	TCGA	5 cut(s)	259, 360, 408, 469, 498
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	3 cut(s)	300, 582, 707
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	4 cut(s)	327, 503, 557, 570
Tru9I	TTAA	4 cut(s)	327, 503, 557, 570
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	492, 589
Tsp45I	GTSAC	2 cut(s)	492, 589
TspDTI	ATGAA	2 cut(s)	21, 630
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	381, 510, 609
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	300
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.