Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001149

Physical Location & Seq

Genomic Coordinates Reverse (-)

14299882 .. 14300540

Gene Structure 659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGGATAGTGGGACTGACGGGTGGGATTTTGTCTGGGAAGAGTACTGTCTCAAATCTCTTCAAGGCCCATGACATTCCTGTTATTGAAGAAGGGAACTGGTGGATGGAAAAATGTTGTTTCAGAATTTGGACACTATGGTTGAAGGGGTTTAAGGTTATTGTTTTTGATATCCCTCTGTTGTTGGAGCCCAAGATGGACAAATGGACAAAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTTCAGAGACTCAATTTGAGGAACAAAACAAATGAGGATGATGCTCGAAACCAAATAAATGCTCAGATGTCGCTTGATATAAAAAGGAGTAAGGCAAACATAGCCACAAAGCCCTTGACATGGACTGAATTTTGGCTTTCTCGACAAGGTGCTTCATCTGCTCTTGTCTCCATTATCTTAGGTGTTCTTATGTTCAAAAACGTTTATAATAGTGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

158

Amino Acids

18.16

Weight (kDa)

9.48

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 30	9.8e-07	Dephospho-CoA kinase
CoaE	PF01121	52 - 117	4.8e-15	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27490 AT2G27490 AT2G27490 AT2G27490
fragaria_vesca	FvH4_2g25231 FvH4_3g05410 FvH4_3g05411 FvH4_7g06070 FvH4_7g06070
malus_domestica	MD11G1303900.v1.1 MD12G1063200.v1.1
prunus_persica	Prupe.8G257100_v2.0.a1
pyrus_communis	pycom03g22320 pycom11g26540
rosa_chinensis	RchiOBHm_Chr1g0333581 RchiOBHm_Chr1g0334201 RchiOBHm_Chr4g0419041 RchiOBHm_Chr5g0006471 RchiOBHm_Chr6g0258301 RchiOBHm_Chr6g0293371 RchiOBHm_Chr7g0221651
rosa_laevigata	RLG00000002140 RLG00000002141 RLG00000002148 RLG00000011952 RLG00000014623 RLG00000029551 RLG00000029602
rosa_multiflora	Rmu_sc0002955.1_g000014 Rmu_sc0005016.1_g000035 Rmu_sc0006269.1_g000029 Rmu_sc0007367.1_g000008
rosa_roxburghii	Rroxscaffold_178G00437330 Rroxscaffold_3G00238150 Rroxscaffold_7G00174220
rosa_rugosa	Rorug04G0156600 Rorug05G0580800 Rorug06G0234800 Rorug06G0234900 Rorug07G0202700
rosa_samantha	Rh1CG126800 Rh1CG129700 Rh1DG138000 Rh1DG138900 Rh1DG139400 Rh4AG218200 Rh6BG355400 Rh6CG361500 Rh6DG348600 Rh7AG343200 Rh7BG333300
rosa_wichuraiana	Rw0G017990 Rw1G010970 Rw1G011030 Rw1G011070 Rw6G008420 Rw6G030260 Rw7G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	126, 377
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	4 cut(s)	64, 89, 145, 445
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	55, 250, 421
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	126, 377
AspS9I	GGNCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	192
BccI	CCATC	2 cut(s)	100, 190
BcoDI	GTCTC	3 cut(s)	55, 250, 421
BmcAI	AGTACT	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	111, 292
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	3 cut(s)	55, 250, 421
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	2 cut(s)	312, 427
BstF5I	GGATG	2 cut(s)	111, 292
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	3 cut(s)	55, 250, 421
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 407
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	111, 292
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	71, 369
CviJI	RGCY	7 cut(s)	68, 190, 214, 250, 353, 361, 385
CviKI_1	RGCY	7 cut(s)	68, 190, 214, 250, 353, 361, 385
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	312, 427
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	74, 372
FaiI	YATR	9 cut(s)	72, 139, 229, 329, 350, 370, 440, 456, 475
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	70, 368
FokI	GGATG	2 cut(s)	118, 299
FriOI	GRGCYC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	74, 372
HinfI	GANTC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	125, 255, 315
Hpy188III	TCNNGA	2 cut(s)	239, 390
HpyAV	CCTTC	2 cut(s)	86, 139
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 407
HpyF3I	CTNAG	2 cut(s)	312, 427
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	74, 372
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	21, 85, 93, 252
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	450
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	3 cut(s)	52, 52, 101
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	126, 262, 377, 470
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	186, 261, 277
MseI	TTAA	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	350, 407
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	74, 372
NlaIV	GGNNCC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	159, 252, 400, 433, 453
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	126, 262, 377, 470
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	234, 295, 391
TasI	AATT	4 cut(s)	126, 262, 377, 470
TatI	WGTACW	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	393
XapI	RAATTY	2 cut(s)	126, 377
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.