Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

8510044 .. 8510678

Gene Structure 635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14131.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTGAAGGAAGCTCAGTGGTTGATAAACAATTCAGCACCAATACTGGATGAATACATGGAAAATGCATATGTATCATTTGCCTTGGGACCAATTGTGCTTCCAGCTCTCTATTTTGTAGGGCCTAAGCTCTCAGAGGAGGCTGTGCGGAGTTCTGAATTCCACCAGCTGTATAAACTTATGAGCACCTGTGGCCGTCTTCTCAATGATATGCAATCCTTTAAGAGGGAATCTGCGGAAGGGAAGCTAAATAGTGTAACATTGGCCATGCTTTATGGCGATGGCAGTGTTACTGAAGAAGAGACCTTCACTGAGATGAAGAGCATTATAACCAGTAAGAGGAGAGAATTGCAAAGGCTAGTTTTGCAGAAGGATAGCTTGGTTCCAAGAGCTTGCAAGGACCTGTTTTGGAACATGTGCAAAATTGTGCACCTATTTTATGCAAAGCACGATGGATTTACTGGGCATGACTTGATGAAAACCGTGAATGGAGTAACTGAAGAACCCATCATTCTCAGTGAATTGCAAGCAGAAAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

5.62

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 115	1.9e-26	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 115	3.1e-24	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AciI	CCGC	2 cut(s)	148, 236
AcoI	YGGCCR	2 cut(s)	193, 264
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	26, 315, 519
AfiI	CCNNNNNNNGG	2 cut(s)	225, 339
AflIII	ACRYGT	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	7 cut(s)	14, 107, 130, 169, 247, 378, 392
AluI	AGCT	7 cut(s)	14, 107, 130, 169, 247, 378, 392
Alw21I	GWGCWC	2 cut(s)	188, 432
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	428
AoxI	GGCC	3 cut(s)	122, 193, 264
ApaLI	GTGCAC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	89, 122, 400
AvaII	GGWCC	2 cut(s)	89, 400
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	188, 432
BccI	CCATC	3 cut(s)	275, 446, 515
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	89, 400
BmgT120I	GGNCC	3 cut(s)	89, 122, 400
BmiI	GGNNCC	2 cut(s)	90, 384
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 339
Bse1I	ACTGG	3 cut(s)	51, 333, 466
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	225, 339
BseMII	CTCAG	4 cut(s)	29, 147, 303, 529
BseNI	ACTGG	3 cut(s)	51, 333, 466
BseRI	GAGGAG	2 cut(s)	152, 355
BseSI	GKGCMC	1 cut(s)	432
BshFI	GGCC	3 cut(s)	124, 195, 266
BsiHKAI	GWGCWC	2 cut(s)	188, 432
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	225, 339
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	124, 195, 266
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	188, 432
BspACI	CCGC	2 cut(s)	148, 236
BspANI	GGCC	3 cut(s)	124, 195, 266
BspCNI	CTCAG	4 cut(s)	28, 146, 304, 528
BspLI	GGNNCC	2 cut(s)	90, 384
BspQI	GCTCTTC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	3 cut(s)	51, 333, 466
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	294, 314
BstC8I	GCNNGC	2 cut(s)	394, 528
BstDEI	CTNAG	5 cut(s)	15, 126, 133, 312, 515
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 364
BstNSI	RCATGY	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	124, 195, 266
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	4 cut(s)	23, 292, 309, 523
Cac8I	GCNNGC	2 cut(s)	394, 528
Cfr13I	GGNCC	3 cut(s)	89, 122, 400
CviAII	CATG	4 cut(s)	58, 268, 415, 467
DdeI	CTNAG	5 cut(s)	15, 126, 133, 312, 515
EaeI	YGGCCR	2 cut(s)	193, 264
Eam1104I	CTCTTC	2 cut(s)	294, 314
EarI	CTCTTC	2 cut(s)	294, 314
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	89, 400
Eco57I	CTGAAG	3 cut(s)	26, 315, 519
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoO109I	RGGNCCY	2 cut(s)	122, 400
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	4 cut(s)	61, 271, 418, 470
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	57, 267, 414, 466
FauNDI	CATATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	124, 195, 266
Hin1II	CATG	4 cut(s)	61, 271, 418, 470
HinfI	GANTC	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	136, 157
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	233, 316, 364
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	9 cut(s)	68, 214, 352, 367, 396, 420, 430, 443, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 364
HpyF3I	CTNAG	5 cut(s)	15, 126, 133, 312, 515
Hsp92II	CATG	4 cut(s)	61, 271, 418, 470
LguI	GCTCTTC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	32, 117, 179, 202, 346, 416, 447
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	3 cut(s)	256, 289, 493
MboII	GAAGA	5 cut(s)	191, 308, 311, 331, 512
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	188, 432
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	6 cut(s)	31, 93, 158, 347, 423, 521
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	130, 133, 219, 333
Mox20I	TGGCCA	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	192, 364
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	4 cut(s)	61, 271, 418, 470
NlaIV	GGNNCC	2 cut(s)	90, 384
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	418
PciI	ACATGT	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	400
PscI	ACATGT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	90, 384
PspPI	GGNCC	3 cut(s)	89, 122, 400
PspPPI	RGGWCCY	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	89, 122, 400
SduI	GDGCHC	2 cut(s)	188, 432
SinI	GGWCC	2 cut(s)	89, 400
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	31, 93, 158, 347, 423, 521
SsiI	CCGC	2 cut(s)	148, 236
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	484
TasI	AATT	6 cut(s)	31, 93, 158, 347, 423, 521
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	4 cut(s)	23, 292, 316, 523
TspDTI	ATGAA	3 cut(s)	66, 332, 491
TspRI	CASTG	4 cut(s)	23, 292, 316, 523
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	89, 400
XagI	CCTNNNNNAGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.